Wall clock time and date at job start Tue Mar 31 2020 21:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21287 * 119.99979 * 2 1 4 4 N 1.34777 * 120.00280 * 180.02562 * 2 1 3 5 5 C 1.46960 * 120.59771 * 185.08303 * 4 2 1 6 6 C 1.53368 * 108.63909 * 124.74321 * 5 4 2 7 7 N 1.46965 * 108.63128 * 49.42931 * 6 5 4 8 8 C 1.34782 * 120.59641 * 124.75334 * 7 6 5 9 9 O 1.21354 * 119.99689 * 188.04647 * 8 7 6 10 10 C 1.49443 * 119.99707 * 8.04041 * 8 7 6 11 11 O 1.21350 * 120.00250 * 6.95835 * 10 8 7 12 12 N 1.34783 * 119.99588 * 186.95574 * 10 8 7 13 13 C 1.46505 * 119.99761 * 184.99374 * 12 10 8 14 14 C 1.53002 * 109.46774 * 184.81911 * 13 12 10 15 15 C 1.50693 * 115.55139 * 302.49019 * 14 13 12 16 16 H 1.08004 * 120.00139 * 99.73456 * 15 14 13 17 17 C 1.37880 * 119.99989 * 279.45148 * 15 14 13 18 18 N 1.31509 * 119.99939 * 355.03585 * 17 15 14 19 19 Si 1.86796 * 120.00186 * 175.03932 * 17 15 14 20 20 H 1.48504 * 109.47420 * 89.99588 * 19 17 15 21 21 H 1.48495 * 109.47381 * 210.00071 * 19 17 15 22 22 H 1.48502 * 109.46909 * 330.00169 * 19 17 15 23 23 C 1.52999 * 117.51439 * 88.19314 * 14 13 12 24 24 C 1.52997 * 60.00244 * 107.47592 * 23 14 13 25 25 C 1.46964 * 118.80887 * 305.02010 * 7 6 5 26 26 H 1.09005 * 109.61178 * 174.72237 * 25 7 6 27 27 C 1.53000 * 109.61370 * 295.23461 * 25 7 6 28 28 C 1.46962 * 120.59376 * 5.05257 * 4 2 1 29 29 H 1.08998 * 109.47078 * 270.84514 * 1 2 3 30 30 H 1.09001 * 109.47299 * 30.85482 * 1 2 3 31 31 H 1.09004 * 109.47104 * 150.85123 * 1 2 3 32 32 H 1.09000 * 109.61024 * 4.99806 * 5 4 2 33 33 H 1.08998 * 109.61378 * 244.49551 * 5 4 2 34 34 H 1.08991 * 109.61435 * 289.67962 * 6 5 4 35 35 H 1.09009 * 109.75161 * 169.24684 * 6 5 4 36 36 H 0.97003 * 120.00273 * 5.00240 * 12 10 8 37 37 H 1.09004 * 109.46437 * 64.82292 * 13 12 10 38 38 H 1.08997 * 109.47387 * 304.82570 * 13 12 10 39 39 H 0.97005 * 120.00005 * 184.99927 * 18 17 15 40 40 H 1.09001 * 117.50112 * 214.96737 * 23 14 13 41 41 H 1.09004 * 117.50081 * 359.97438 * 23 14 13 42 42 H 1.08994 * 117.50142 * 252.50818 * 24 23 14 43 43 H 1.09006 * 117.50018 * 107.48342 * 24 23 14 44 44 H 1.08993 * 109.46977 * 59.99513 * 27 25 7 45 45 H 1.08994 * 109.47298 * 180.02562 * 27 25 7 46 46 H 1.09002 * 109.46878 * 299.99925 * 27 25 7 47 47 H 1.09006 * 109.61206 * 354.99743 * 28 4 2 48 48 H 1.09001 * 109.61146 * 115.33294 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6461 -1.1850 0.1115 6 6 4.0360 -2.0717 1.3006 7 7 3.3188 -3.3495 1.1886 8 6 3.9927 -4.5167 1.1882 9 8 3.4096 -5.5539 0.9494 10 6 5.4579 -4.5336 1.4816 11 8 6.0161 -3.5186 1.8433 12 7 6.1595 -5.6762 1.3445 13 6 7.5706 -5.7209 1.7360 14 6 8.1585 -7.0851 1.3696 15 6 7.4628 -8.2766 1.9754 16 1 6.7560 -8.8450 1.3891 17 6 7.7328 -8.6447 3.2765 18 7 8.6676 -8.0177 3.9567 19 14 6.7712 -10.0340 4.0729 20 1 7.4668 -11.3226 3.8262 21 1 6.6757 -9.7951 5.5354 22 1 5.4064 -10.0889 3.4902 23 6 8.7455 -7.2479 -0.0339 24 6 9.6742 -7.1730 1.1797 25 6 1.8539 -3.3315 1.0709 26 1 1.4879 -4.3445 0.9036 27 6 1.2426 -2.7663 2.3546 28 6 1.4636 -2.4450 -0.1125 29 1 -0.3633 0.0152 1.0275 30 1 -0.3634 0.8822 -0.5271 31 1 -0.3633 -0.8975 -0.5006 32 1 4.0128 -0.1716 0.2751 33 1 4.0782 -1.5896 -0.8037 34 1 3.7595 -1.5773 2.2318 35 1 5.1108 -2.2532 1.2880 36 1 5.7302 -6.4690 0.9865 37 1 7.6541 -5.5662 2.8118 38 1 8.1178 -4.9368 1.2127 39 1 8.9079 -8.3229 4.8455 40 1 8.6284 -8.2169 -0.5191 41 1 8.7125 -6.3831 -0.6967 42 1 10.2523 -6.2591 1.3154 43 1 10.1681 -8.0929 1.4930 44 1 1.6056 -1.7510 2.5135 45 1 0.1564 -2.7544 2.2651 46 1 1.5303 -3.3915 3.1999 47 1 0.3888 -2.2638 -0.0968 48 1 1.7378 -2.9379 -1.0452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117685708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:32 Heat of formation + Delta-G solvation = -52.786392 kcal Electronic energy + Delta-G solvation = -30251.762143 eV Core-core repulsion = 26115.707941 eV Total energy + Delta-G solvation = -4136.054202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12522 -39.95172 -38.48626 -37.36687 -36.82551 -34.51916 -33.44936 -32.91711 -32.05203 -30.58436 -28.57840 -27.19406 -26.67276 -25.51547 -23.97920 -23.52522 -21.29424 -21.01435 -20.28369 -19.60181 -18.58305 -17.74018 -17.20081 -16.59087 -16.28623 -16.16595 -16.04836 -15.85237 -15.27391 -14.87628 -14.71434 -14.42402 -14.22530 -14.08910 -13.88746 -13.58117 -13.22621 -13.04322 -12.98694 -12.79314 -12.60805 -12.41386 -12.11905 -11.94521 -11.86790 -11.70212 -11.60277 -11.22623 -11.06845 -10.99927 -10.94921 -10.56562 -10.30456 -10.10074 -9.64525 -9.50296 -9.13553 -9.04611 -8.61590 -8.56146 -8.44589 -8.19971 -6.14330 -4.24039 1.65103 2.31443 2.32996 2.76479 3.23371 3.31634 3.35220 3.43167 3.74724 4.19307 4.31538 4.37806 4.49077 4.65912 4.75291 4.81973 4.96096 4.98492 5.03702 5.09089 5.14756 5.20854 5.26304 5.32321 5.37376 5.55315 5.60203 5.64208 5.83718 5.89830 5.92462 6.14819 6.20975 6.25686 6.35603 6.42370 6.62620 6.71256 6.97501 7.00900 7.02518 7.10866 7.25014 7.41118 7.67773 7.76512 7.85240 8.06056 8.25341 8.44227 8.78222 9.44241 10.92910 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002762 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.001885 B =10134.336742 C =10902.285615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.513 3.487 3 O -0.547 6.547 4 N -0.612 5.612 5 C 0.097 3.903 6 C 0.053 3.947 7 N -0.585 5.585 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.496 3.504 11 O -0.532 6.532 12 N -0.657 5.657 13 C 0.158 3.842 14 C 0.023 3.977 15 C -0.504 4.504 16 H 0.062 0.938 17 C 0.075 3.925 18 N -0.874 5.874 19 Si 0.889 3.111 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.271 1.271 23 C -0.209 4.209 24 C -0.145 4.145 25 C 0.118 3.882 26 H 0.114 0.886 27 C -0.160 4.160 28 C 0.096 3.904 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.161 0.839 36 H 0.416 0.584 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.262 0.738 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.060 0.940 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.255 11.660 -6.930 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.302 3.698 3 O -0.425 6.425 4 N -0.347 5.347 5 C -0.026 4.026 6 C -0.069 4.069 7 N -0.320 5.320 8 C 0.295 3.705 9 O -0.391 6.391 10 C 0.277 3.723 11 O -0.413 6.413 12 N -0.306 5.306 13 C 0.035 3.965 14 C 0.022 3.978 15 C -0.541 4.541 16 H 0.080 0.920 17 C -0.129 4.129 18 N -0.510 5.510 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.195 1.195 23 C -0.246 4.246 24 C -0.183 4.183 25 C 0.014 3.986 26 H 0.132 0.868 27 C -0.218 4.218 28 C -0.027 4.027 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.177 0.823 36 H 0.253 0.747 37 H 0.095 0.905 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.120 0.880 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.774 12.368 -6.572 20.357 hybrid contribution -0.700 -1.227 0.491 1.495 sum -15.474 11.141 -6.081 20.013 Atomic orbital electron populations 1.21995 0.91919 1.04819 1.04933 1.20815 0.90616 0.82989 0.75372 1.90722 1.70700 1.30976 1.50093 1.48155 1.07621 1.05963 1.72939 1.22121 0.79342 1.02240 0.98924 1.23397 1.03358 0.82512 0.97596 1.47926 1.06323 1.06309 1.71392 1.20450 0.88754 0.83597 0.77667 1.90753 1.69918 1.31764 1.46684 1.19908 0.87089 0.84879 0.80443 1.90380 1.70659 1.31622 1.48687 1.45931 1.12967 1.12179 1.59511 1.21190 0.77551 0.97375 1.00334 1.19013 0.93034 0.92717 0.92997 1.20375 1.25328 1.11607 0.96789 0.91956 1.24982 0.94857 0.96178 0.96923 1.69973 1.29210 1.39402 1.12395 0.86626 0.80836 0.82157 0.78708 1.20616 1.21152 1.19549 1.23024 1.09187 1.00471 0.91943 1.22500 0.94302 1.00998 1.00482 1.21571 0.80275 1.01515 0.95275 0.86798 1.22093 1.00614 1.01891 0.97191 1.22208 0.97918 0.83952 0.98660 0.88686 0.88904 0.89854 0.87772 0.91010 0.91124 0.82314 0.74716 0.90528 0.93268 0.92790 0.90236 0.91563 0.91649 0.89570 0.92101 0.91161 0.91726 0.88007 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.65 36.00 0.35 -0.66 16 2 C 0.51 5.18 7.80 -10.99 -0.09 5.09 16 3 O -0.55 -7.87 16.53 5.55 0.09 -7.78 16 4 N -0.61 -5.75 2.59 -172.76 -0.45 -6.20 16 5 C 0.10 1.03 6.58 -3.60 -0.02 1.00 16 6 C 0.05 0.63 5.78 -3.60 -0.02 0.61 16 7 N -0.58 -7.32 2.67 -165.71 -0.44 -7.77 16 8 C 0.51 8.08 7.74 -11.59 -0.09 7.99 16 9 O -0.52 -9.07 15.94 5.49 0.09 -8.98 16 10 C 0.50 8.82 7.74 -11.59 -0.09 8.73 16 11 O -0.53 -9.83 13.14 5.50 0.07 -9.75 16 12 N -0.66 -12.66 5.41 -60.73 -0.33 -12.99 16 13 C 0.16 3.36 5.56 -4.04 -0.02 3.33 16 14 C 0.02 0.52 1.50 -155.66 -0.23 0.29 16 15 C -0.50 -12.67 8.20 -34.44 -0.28 -12.95 16 16 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 17 C 0.08 1.95 5.44 -17.82 -0.10 1.85 16 18 N -0.87 -23.56 12.86 55.43 0.71 -22.85 16 19 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C -0.21 -4.20 9.94 -26.73 -0.27 -4.47 16 24 C -0.14 -3.16 9.43 -26.73 -0.25 -3.42 16 25 C 0.12 1.12 3.22 -67.71 -0.22 0.90 16 26 H 0.11 1.16 7.00 -51.93 -0.36 0.79 16 27 C -0.16 -1.32 9.12 37.16 0.34 -0.98 16 28 C 0.10 0.71 5.80 -3.83 -0.02 0.69 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.29 5.89 -51.93 -0.31 -0.02 16 32 H 0.10 1.18 7.02 -51.93 -0.36 0.82 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.83 7.41 -51.93 -0.39 0.45 16 35 H 0.16 2.21 4.19 -55.31 -0.23 1.98 16 36 H 0.42 8.06 7.57 -40.82 -0.31 7.76 16 37 H 0.08 1.84 8.14 -51.93 -0.42 1.41 16 38 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 39 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 44 H 0.06 0.54 7.03 -51.93 -0.36 0.18 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.10 0.44 5.29 -51.93 -0.27 0.16 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 388.68 15.07 5.86 5.86 Total: -1.00 -30.42 388.68 -7.65 -38.07 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.21 Total: 9.01 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.02 Total: 8.02 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.51 Total: -49.80 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: 0.25 Total: -26.51 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.42 -7.65 -38.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.717 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds