Wall clock time and date at job start Tue Mar 31 2020 21:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 O 1.21287 * 119.99979 * 2 1 4 4 N 1.34777 * 120.00280 * 180.02562 * 2 1 3 5 5 C 1.46960 * 120.59771 * 185.08303 * 4 2 1 6 6 C 1.53368 * 108.63909 * 124.74321 * 5 4 2 7 7 N 1.46965 * 108.63128 * 49.42931 * 6 5 4 8 8 C 1.34782 * 120.59641 * 124.75334 * 7 6 5 9 9 O 1.21354 * 119.99689 * 188.04647 * 8 7 6 10 10 C 1.49443 * 119.99707 * 8.04041 * 8 7 6 11 11 O 1.21350 * 120.00250 * 6.95835 * 10 8 7 12 12 N 1.34783 * 119.99588 * 186.95574 * 10 8 7 13 13 C 1.46505 * 119.99761 * 184.99374 * 12 10 8 14 14 C 1.53002 * 109.46774 * 184.81911 * 13 12 10 15 15 C 1.50693 * 115.55139 * 302.49019 * 14 13 12 16 16 H 1.08004 * 120.00139 * 99.73456 * 15 14 13 17 17 C 1.37880 * 119.99989 * 279.45148 * 15 14 13 18 18 N 1.31509 * 119.99939 * 355.03585 * 17 15 14 19 19 Si 1.86796 * 120.00186 * 175.03932 * 17 15 14 20 20 H 1.48504 * 109.47420 * 89.99588 * 19 17 15 21 21 H 1.48495 * 109.47381 * 210.00071 * 19 17 15 22 22 H 1.48502 * 109.46909 * 330.00169 * 19 17 15 23 23 C 1.52999 * 117.51439 * 88.19314 * 14 13 12 24 24 C 1.52997 * 60.00244 * 107.47592 * 23 14 13 25 25 C 1.46964 * 118.80887 * 305.02010 * 7 6 5 26 26 H 1.09005 * 109.61178 * 174.72237 * 25 7 6 27 27 C 1.53000 * 109.61370 * 295.23461 * 25 7 6 28 28 C 1.46962 * 120.59376 * 5.05257 * 4 2 1 29 29 H 1.08998 * 109.47078 * 270.84514 * 1 2 3 30 30 H 1.09001 * 109.47299 * 30.85482 * 1 2 3 31 31 H 1.09004 * 109.47104 * 150.85123 * 1 2 3 32 32 H 1.09000 * 109.61024 * 4.99806 * 5 4 2 33 33 H 1.08998 * 109.61378 * 244.49551 * 5 4 2 34 34 H 1.08991 * 109.61435 * 289.67962 * 6 5 4 35 35 H 1.09009 * 109.75161 * 169.24684 * 6 5 4 36 36 H 0.97003 * 120.00273 * 5.00240 * 12 10 8 37 37 H 1.09004 * 109.46437 * 64.82292 * 13 12 10 38 38 H 1.08997 * 109.47387 * 304.82570 * 13 12 10 39 39 H 0.97005 * 120.00005 * 184.99927 * 18 17 15 40 40 H 1.09001 * 117.50112 * 214.96737 * 23 14 13 41 41 H 1.09004 * 117.50081 * 359.97438 * 23 14 13 42 42 H 1.08994 * 117.50142 * 252.50818 * 24 23 14 43 43 H 1.09006 * 117.50018 * 107.48342 * 24 23 14 44 44 H 1.08993 * 109.46977 * 59.99513 * 27 25 7 45 45 H 1.08994 * 109.47298 * 180.02562 * 27 25 7 46 46 H 1.09002 * 109.46878 * 299.99925 * 27 25 7 47 47 H 1.09006 * 109.61206 * 354.99743 * 28 4 2 48 48 H 1.09001 * 109.61146 * 115.33294 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6461 -1.1850 0.1115 6 6 4.0360 -2.0717 1.3006 7 7 3.3188 -3.3495 1.1886 8 6 3.9927 -4.5167 1.1882 9 8 3.4096 -5.5539 0.9494 10 6 5.4579 -4.5336 1.4816 11 8 6.0161 -3.5186 1.8433 12 7 6.1595 -5.6762 1.3445 13 6 7.5706 -5.7209 1.7360 14 6 8.1585 -7.0851 1.3696 15 6 7.4628 -8.2766 1.9754 16 1 6.7560 -8.8450 1.3891 17 6 7.7328 -8.6447 3.2765 18 7 8.6676 -8.0177 3.9567 19 14 6.7712 -10.0340 4.0729 20 1 7.4668 -11.3226 3.8262 21 1 6.6757 -9.7951 5.5354 22 1 5.4064 -10.0889 3.4902 23 6 8.7455 -7.2479 -0.0339 24 6 9.6742 -7.1730 1.1797 25 6 1.8539 -3.3315 1.0709 26 1 1.4879 -4.3445 0.9036 27 6 1.2426 -2.7663 2.3546 28 6 1.4636 -2.4450 -0.1125 29 1 -0.3633 0.0152 1.0275 30 1 -0.3634 0.8822 -0.5271 31 1 -0.3633 -0.8975 -0.5006 32 1 4.0128 -0.1716 0.2751 33 1 4.0782 -1.5896 -0.8037 34 1 3.7595 -1.5773 2.2318 35 1 5.1108 -2.2532 1.2880 36 1 5.7302 -6.4690 0.9865 37 1 7.6541 -5.5662 2.8118 38 1 8.1178 -4.9368 1.2127 39 1 8.9079 -8.3229 4.8455 40 1 8.6284 -8.2169 -0.5191 41 1 8.7125 -6.3831 -0.6967 42 1 10.2523 -6.2591 1.3154 43 1 10.1681 -8.0929 1.4930 44 1 1.6056 -1.7510 2.5135 45 1 0.1564 -2.7544 2.2651 46 1 1.5303 -3.3915 3.1999 47 1 0.3888 -2.2638 -0.0968 48 1 1.7378 -2.9379 -1.0452 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117685708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:29 Heat of formation + Delta-G solvation = -72.862247 kcal Electronic energy + Delta-G solvation = -30252.632697 eV Core-core repulsion = 26115.707941 eV Total energy + Delta-G solvation = -4136.924757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.22126 -40.98973 -39.77286 -38.54775 -38.38486 -35.63583 -34.79187 -34.00477 -33.78358 -31.30319 -29.39094 -28.68379 -27.53699 -27.32443 -25.19523 -24.50704 -22.94195 -22.02186 -21.55794 -21.17704 -19.73933 -18.78403 -18.32097 -18.05425 -17.45490 -17.23344 -17.07807 -16.88996 -16.66938 -16.44791 -16.12160 -15.59608 -15.55437 -15.13706 -14.88946 -14.75712 -14.49628 -14.23178 -14.10365 -13.75469 -13.60307 -13.50383 -13.23237 -13.15500 -12.96509 -12.83664 -12.80040 -12.62496 -12.38676 -12.37737 -12.22427 -12.02746 -12.01752 -11.40757 -10.98562 -10.94867 -10.50496 -10.48088 -10.41771 -10.02582 -9.93086 -9.47911 -8.12093 -6.25192 0.31166 1.21232 1.40033 1.44208 1.51945 1.57354 1.93682 2.08648 2.40618 2.51233 3.15019 3.28159 3.52550 3.57580 3.68759 3.80068 3.99227 4.07202 4.19312 4.20058 4.33021 4.40138 4.50330 4.51375 4.59102 4.63076 4.64477 4.71235 4.72032 4.76613 4.86007 4.88593 4.98742 5.02372 5.11495 5.18780 5.23786 5.27643 5.35260 5.47034 5.55447 5.67322 5.76833 5.88846 6.30228 6.35035 6.35348 6.70370 6.82094 6.97549 7.10393 7.44848 8.94685 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002762 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.001885 B =10134.336742 C =10902.285615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.507 3.493 3 O -0.598 6.598 4 N -0.611 5.611 5 C 0.102 3.898 6 C 0.060 3.940 7 N -0.574 5.574 8 C 0.515 3.485 9 O -0.537 6.537 10 C 0.495 3.505 11 O -0.542 6.542 12 N -0.664 5.664 13 C 0.174 3.826 14 C -0.001 4.001 15 C -0.508 4.508 16 H 0.059 0.941 17 C 0.030 3.970 18 N -0.903 5.903 19 Si 0.942 3.058 20 H -0.276 1.276 21 H -0.289 1.289 22 H -0.268 1.268 23 C -0.180 4.180 24 C -0.152 4.152 25 C 0.110 3.890 26 H 0.113 0.887 27 C -0.154 4.154 28 C 0.100 3.900 29 H 0.113 0.887 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.141 0.859 36 H 0.415 0.585 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.260 0.740 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.106 0.894 46 H 0.045 0.955 47 H 0.144 0.856 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.069 12.028 -8.104 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.299 3.701 3 O -0.479 6.479 4 N -0.345 5.345 5 C -0.021 4.021 6 C -0.062 4.062 7 N -0.308 5.308 8 C 0.298 3.702 9 O -0.414 6.414 10 C 0.276 3.724 11 O -0.423 6.423 12 N -0.312 5.312 13 C 0.051 3.949 14 C -0.001 4.001 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.171 4.171 18 N -0.540 5.540 19 Si 0.769 3.231 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.192 1.192 23 C -0.217 4.217 24 C -0.190 4.190 25 C 0.008 3.992 26 H 0.131 0.869 27 C -0.212 4.212 28 C -0.022 4.022 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.131 0.869 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.158 0.842 36 H 0.252 0.748 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.125 0.875 46 H 0.064 0.936 47 H 0.161 0.839 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.629 12.744 -7.760 23.095 hybrid contribution 0.156 -1.270 0.839 1.530 sum -17.473 11.474 -6.921 22.019 Atomic orbital electron populations 1.22043 0.87949 1.06409 1.06499 1.21679 0.92431 0.82087 0.73900 1.90705 1.72071 1.32756 1.52417 1.48242 1.06966 1.06879 1.72367 1.21919 0.80839 1.01187 0.98196 1.23217 1.02205 0.82378 0.98418 1.48038 1.07894 1.05332 1.69490 1.19994 0.87636 0.84370 0.78224 1.90744 1.69856 1.32535 1.48282 1.20359 0.88189 0.84168 0.79679 1.90409 1.71407 1.31832 1.48649 1.45842 1.12364 1.12760 1.60279 1.20804 0.78929 0.96932 0.98223 1.19064 0.93341 0.92529 0.95215 1.20644 1.24934 1.12113 0.96839 0.92288 1.25610 0.95638 0.98237 0.97607 1.70074 1.30644 1.40749 1.12529 0.85789 0.79781 0.80029 0.77529 1.20174 1.21545 1.19240 1.23019 1.06093 1.01636 0.90971 1.22426 0.94020 1.00481 1.02063 1.21923 0.77839 1.02318 0.97155 0.86911 1.22079 1.02780 1.00765 0.95559 1.22384 0.99993 0.82310 0.97537 0.86890 0.88718 0.86939 0.88736 0.90780 0.90962 0.84249 0.74815 0.94038 0.92282 0.93101 0.89937 0.89060 0.90595 0.91749 0.92726 0.87533 0.93589 0.83875 0.90041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.65 71.23 0.69 -0.55 16 2 C 0.51 9.10 7.80 87.65 0.68 9.78 16 3 O -0.60 -16.81 16.53 -3.05 -0.05 -16.86 16 4 N -0.61 -10.07 2.59 -818.88 -2.12 -12.19 16 5 C 0.10 2.10 6.58 86.42 0.57 2.67 16 6 C 0.06 1.40 5.78 86.41 0.50 1.90 16 7 N -0.57 -13.77 2.67 -796.53 -2.13 -15.90 16 8 C 0.52 16.05 7.74 87.27 0.68 16.73 16 9 O -0.54 -18.55 15.94 -3.26 -0.05 -18.60 16 10 C 0.49 17.72 7.74 87.27 0.68 18.40 16 11 O -0.54 -20.31 13.14 -3.25 -0.04 -20.36 16 12 N -0.66 -25.81 5.41 -464.39 -2.51 -28.32 16 13 C 0.17 7.52 5.56 86.38 0.48 8.00 16 14 C 0.00 -0.04 1.50 -52.93 -0.08 -0.11 16 15 C -0.51 -25.74 8.20 25.60 0.21 -25.53 16 16 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 17 C 0.03 1.59 5.44 84.66 0.46 2.05 16 18 N -0.90 -49.76 12.86 21.45 0.28 -49.49 16 19 Si 0.94 42.21 29.54 68.60 2.03 44.24 16 20 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 C -0.18 -7.01 9.94 30.59 0.30 -6.70 16 24 C -0.15 -6.64 9.43 30.59 0.29 -6.36 16 25 C 0.11 1.82 3.22 44.88 0.14 1.96 16 26 H 0.11 1.99 7.00 -2.38 -0.02 1.98 16 27 C -0.15 -2.11 9.12 71.98 0.66 -1.45 16 28 C 0.10 1.11 5.80 86.27 0.50 1.61 16 29 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.14 5.89 -2.39 -0.01 0.13 16 32 H 0.09 2.16 7.02 -2.39 -0.02 2.15 16 33 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.68 7.41 -2.39 -0.02 1.66 16 35 H 0.14 3.93 4.19 -55.96 -0.23 3.69 16 36 H 0.42 16.21 7.57 -92.71 -0.70 15.51 16 37 H 0.04 2.06 8.14 -2.38 -0.02 2.04 16 38 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 39 H 0.26 13.85 8.32 -92.70 -0.77 13.08 16 40 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 42 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.06 3.08 8.14 -2.38 -0.02 3.06 16 44 H 0.05 0.83 7.03 -2.39 -0.02 0.82 16 45 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.14 0.43 5.29 -2.38 -0.01 0.41 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -67.85 388.68 2.21 -65.64 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.06 Total: 29.44 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 6.76 Total: 22.40 kcal Atomic # 7 Polarization: -99.41 SS G_CDS: -6.49 Total: -105.90 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.15 Total: -55.81 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -67.85 2.21 -65.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117685708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.222 kcal (2) G-P(sol) polarization free energy of solvation -67.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds