Wall clock time and date at job start Tue Mar 31 2020 21:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.50054 * 2 1 4 4 C 1.53188 * 109.50103 * 239.93332 * 2 1 3 5 5 N 1.46927 * 108.77683 * 185.41366 * 4 2 1 6 6 C 1.34774 * 120.62799 * 233.62652 * 5 4 2 7 7 O 1.21274 * 120.00344 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.99824 * 179.97438 * 6 5 4 9 9 N 1.46498 * 109.47366 * 180.02562 * 8 6 5 10 10 C 1.33874 * 122.76442 * 269.71351 * 9 8 6 11 11 O 1.21227 * 125.39902 * 359.97438 * 10 9 8 12 12 C 1.51316 * 109.20689 * 179.83789 * 10 9 8 13 13 C 1.54223 * 103.55362 * 0.39033 * 12 10 9 14 14 C 1.33877 * 122.76043 * 90.00037 * 9 8 6 15 15 O 1.21224 * 125.39793 * 359.97438 * 14 9 8 16 16 C 1.46930 * 118.73922 * 53.61185 * 5 4 2 17 17 C 1.53196 * 108.77053 * 306.38985 * 16 5 4 18 18 C 1.53035 * 109.31532 * 54.63675 * 17 16 5 19 19 H 1.09000 * 109.46299 * 58.65148 * 18 17 16 20 20 C 1.52997 * 109.46102 * 178.61581 * 18 17 16 21 21 N 1.46500 * 109.46742 * 295.06779 * 20 18 17 22 22 C 1.36942 * 119.99836 * 179.97438 * 21 20 18 23 23 H 1.07999 * 120.00216 * 0.02562 * 22 21 20 24 24 C 1.38817 * 120.00170 * 179.97438 * 22 21 20 25 25 N 1.31628 * 119.99625 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00222 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47109 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47235 * 119.99902 * 26 24 22 29 29 H 1.48500 * 109.47066 * 239.99821 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.06777 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.06758 * 1 2 3 33 33 H 1.09004 * 109.58648 * 305.19787 * 4 2 1 34 34 H 1.09000 * 109.58450 * 65.62522 * 4 2 1 35 35 H 1.08996 * 109.47327 * 300.00563 * 8 6 5 36 36 H 1.09004 * 109.46749 * 60.00546 * 8 6 5 37 37 H 1.09001 * 110.79717 * 241.77663 * 12 10 9 38 38 H 1.09003 * 110.41122 * 118.81282 * 12 10 9 39 39 H 1.09001 * 110.60230 * 241.25519 * 13 12 10 40 40 H 1.09001 * 110.73910 * 118.35789 * 13 12 10 41 41 H 1.08998 * 109.58622 * 66.17584 * 16 5 4 42 42 H 1.08998 * 109.58458 * 186.46541 * 16 5 4 43 43 H 1.09001 * 109.49543 * 174.58848 * 17 16 5 44 44 H 1.09002 * 109.49412 * 294.64844 * 17 16 5 45 45 H 1.09004 * 109.47554 * 55.06550 * 20 18 17 46 46 H 1.08998 * 109.47197 * 175.06944 * 20 18 17 47 47 H 0.96993 * 120.00367 * 359.97438 * 21 20 18 48 48 H 0.96997 * 119.99892 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2497 5 7 3.5047 -0.8288 -1.1697 6 6 4.2812 -0.3850 -2.1779 7 8 3.7733 0.1072 -3.1630 8 6 5.7807 -0.4996 -2.0806 9 7 6.3921 0.0495 -3.2934 10 6 6.6534 -0.6958 -4.3743 11 8 6.4245 -1.8814 -4.4819 12 6 7.2766 0.1768 -5.4419 13 6 7.3401 1.5683 -4.7798 14 6 6.7407 1.3369 -3.4099 15 8 6.5983 2.1832 -2.5537 16 6 4.1053 -1.4267 0.0305 17 6 3.5708 -0.6953 1.2659 18 6 2.0408 -0.7234 1.2482 19 1 1.6967 -1.7576 1.2349 20 6 1.5037 -0.0238 2.4984 21 7 1.8931 -0.7840 3.6886 22 6 1.5224 -0.3463 4.9322 23 1 0.9428 0.5591 5.0354 24 6 1.8909 -1.0668 6.0600 25 7 2.5970 -2.1705 5.9341 26 14 1.3848 -0.4701 7.7562 27 1 0.6019 0.7850 7.6262 28 1 0.5515 -1.5064 8.4172 29 1 2.5980 -0.2151 8.5736 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5128 -0.8906 32 1 -0.3634 0.5149 0.8894 33 1 1.6053 -1.7213 -1.2984 34 1 1.7638 -0.1574 -2.1389 35 1 6.1321 0.0580 -1.2125 36 1 6.0589 -1.5483 -1.9759 37 1 6.6503 0.2044 -6.3336 38 1 8.2780 -0.1778 -5.6861 39 1 6.7453 2.2881 -5.3422 40 1 8.3721 1.9085 -4.6946 41 1 3.8376 -2.4818 0.0862 42 1 5.1898 -1.3268 -0.0151 43 1 3.9333 -1.1902 2.1669 44 1 3.9164 0.3384 1.2545 45 1 1.9184 0.9825 2.5582 46 1 0.4166 0.0339 2.4437 47 1 2.4133 -1.5973 3.5959 48 1 2.8548 -2.6738 6.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185643390.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:43 Heat of formation + Delta-G solvation = -88.439228 kcal Electronic energy + Delta-G solvation = -29935.912087 eV Core-core repulsion = 25798.311862 eV Total energy + Delta-G solvation = -4137.600225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30434 -40.24311 -38.88870 -38.07379 -36.14676 -35.06570 -34.03106 -33.47000 -32.00443 -30.35510 -28.93748 -26.93735 -26.57862 -26.11128 -23.77079 -22.76691 -22.58459 -21.51303 -20.67188 -19.69978 -19.08478 -18.01619 -17.51024 -17.13136 -16.84378 -16.68702 -15.90213 -15.50612 -15.01121 -14.83035 -14.56922 -14.54363 -14.29086 -14.27758 -13.94963 -13.78255 -13.56026 -13.51796 -13.21607 -12.95803 -12.69572 -12.52412 -12.37342 -11.94579 -11.84756 -11.82345 -11.64924 -11.04586 -11.00756 -10.91763 -10.84214 -10.72482 -10.40760 -10.40566 -10.29881 -10.20106 -9.96642 -9.68196 -9.64811 -8.87693 -8.69148 -6.91314 -5.78050 -3.05774 1.17940 1.94009 2.34266 2.37211 2.92488 3.42415 3.48524 3.50394 3.65646 3.79100 3.99265 4.18035 4.41426 4.57641 4.63920 4.70891 4.83336 4.90610 4.94341 4.97826 4.98805 5.07233 5.13510 5.17113 5.26423 5.40880 5.48238 5.56496 5.67137 5.76463 5.83128 5.88604 5.95224 6.05095 6.19440 6.26982 6.30445 6.40582 6.41025 6.48295 6.59958 6.82086 6.92179 6.94766 7.20022 7.39148 7.70183 7.91887 8.41546 9.52774 10.10898 10.45499 11.45061 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018993 B = 0.002383 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.852680 B =11747.602966 C =12229.028177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.506 3.494 7 O -0.541 6.541 8 C 0.078 3.922 9 N -0.559 5.559 10 C 0.531 3.469 11 O -0.480 6.480 12 C -0.153 4.153 13 C -0.154 4.154 14 C 0.530 3.470 15 O -0.476 6.476 16 C 0.102 3.898 17 C -0.127 4.127 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.017 0.983 46 H 0.025 0.975 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 3.810 -24.340 26.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.293 3.707 7 O -0.418 6.418 8 C -0.047 4.047 9 N -0.302 5.302 10 C 0.320 3.680 11 O -0.352 6.352 12 C -0.193 4.193 13 C -0.194 4.194 14 C 0.319 3.681 15 O -0.347 6.347 16 C -0.020 4.020 17 C -0.165 4.165 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.035 0.965 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.450 3.982 -24.304 26.378 hybrid contribution -0.160 -0.079 1.239 1.252 sum 9.290 3.903 -23.065 25.170 Atomic orbital electron populations 1.21827 0.94286 1.02220 1.02087 1.21466 0.96207 0.99959 0.94082 0.90863 1.21734 0.78242 1.01039 0.99304 1.48101 1.07295 1.60110 1.18005 1.20585 0.89034 0.78056 0.83056 1.90681 1.75088 1.44847 1.31198 1.21656 0.91659 1.03138 0.88232 1.46353 1.55172 1.12308 1.16379 1.20838 0.76471 0.87372 0.83293 1.90789 1.50367 1.14055 1.79948 1.22449 1.04699 0.93454 0.98711 1.22450 1.04959 0.98857 0.93086 1.20848 0.76310 0.80771 0.90199 1.90810 1.51742 1.46237 1.45914 1.21968 0.97695 0.97971 0.84372 1.21946 0.96228 1.01232 0.97070 1.21336 0.94603 1.00242 0.94571 0.90873 1.20754 0.96701 0.94073 0.85582 1.42382 1.65414 1.28966 1.00859 1.19275 1.27479 1.06160 0.83820 0.91236 1.24725 1.01002 0.97552 0.97813 1.69661 1.42918 1.17335 1.28433 0.86129 0.77658 0.77754 0.84746 1.20603 1.21909 1.21894 0.92463 0.93023 0.91233 0.91266 0.89275 0.85642 0.85773 0.85932 0.86052 0.85963 0.85999 0.90520 0.90186 0.89008 0.91593 0.96530 0.95762 0.78330 0.93611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.81 37.16 0.33 -1.47 16 2 C -0.10 -1.29 2.41 -90.50 -0.22 -1.51 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.51 5.72 -3.71 -0.02 1.49 16 5 N -0.60 -7.61 2.97 -172.76 -0.51 -8.13 16 6 C 0.51 6.88 7.77 -10.99 -0.09 6.79 16 7 O -0.54 -8.99 15.84 5.56 0.09 -8.90 16 8 C 0.08 0.82 4.38 -5.19 -0.02 0.80 16 9 N -0.56 -5.68 2.04 -116.63 -0.24 -5.92 16 10 C 0.53 5.00 8.08 -11.09 -0.09 4.91 16 11 O -0.48 -6.13 17.47 5.60 0.10 -6.03 16 12 C -0.15 -0.65 7.03 -26.94 -0.19 -0.84 16 13 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 14 C 0.53 5.16 8.08 -11.09 -0.09 5.07 16 15 O -0.48 -6.41 17.48 5.61 0.10 -6.32 16 16 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 17 C -0.13 -1.80 5.25 -26.61 -0.14 -1.94 16 18 C -0.09 -1.35 1.73 -90.58 -0.16 -1.51 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 21 N -0.73 -17.97 5.32 -59.91 -0.32 -18.29 16 22 C -0.24 -6.54 9.99 -15.05 -0.15 -6.69 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.02 -0.43 5.50 -17.42 -0.10 -0.53 16 25 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 26 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.21 7.00 -51.93 -0.36 0.85 16 35 H 0.13 1.18 7.38 -51.93 -0.38 0.80 16 36 H 0.12 1.09 7.62 -51.93 -0.40 0.70 16 37 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 43 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.02 0.48 6.14 -51.93 -0.32 0.16 16 47 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -36.78 386.80 -7.79 -44.56 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.37 Total: 5.10 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.17 Total: 7.85 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.35 Total: -59.43 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.28 Total: -21.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.78 -7.79 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643390.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.874 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds