Wall clock time and date at job start Tue Mar 31 2020 21:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.49909 * 2 1 4 4 C 1.53196 * 109.49731 * 120.06496 * 2 1 3 5 5 N 1.46929 * 108.77486 * 174.58144 * 4 2 1 6 6 C 1.34779 * 120.62811 * 126.39016 * 5 4 2 7 7 O 1.21284 * 119.99950 * 0.02562 * 6 5 4 8 8 C 1.50692 * 120.00005 * 180.02562 * 6 5 4 9 9 N 1.46493 * 109.47157 * 180.02562 * 8 6 5 10 10 C 1.33883 * 122.76293 * 269.70737 * 9 8 6 11 11 O 1.21223 * 125.39183 * 359.97438 * 10 9 8 12 12 C 1.51319 * 109.20857 * 179.84265 * 10 9 8 13 13 C 1.54226 * 103.55140 * 0.38901 * 12 10 9 14 14 C 1.33882 * 122.76859 * 90.00217 * 9 8 6 15 15 O 1.21229 * 125.39140 * 0.02562 * 14 9 8 16 16 C 1.46918 * 118.73922 * 306.39780 * 5 4 2 17 17 C 1.53194 * 108.78089 * 53.60697 * 16 5 4 18 18 C 1.53037 * 109.49597 * 239.90250 * 2 1 3 19 19 H 1.09004 * 109.46115 * 298.70792 * 18 2 1 20 20 C 1.52999 * 109.46122 * 58.66309 * 18 2 1 21 21 N 1.46499 * 109.47420 * 185.00022 * 20 18 2 22 22 C 1.36933 * 119.99845 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00549 * 0.02562 * 22 21 20 24 24 C 1.38818 * 119.99887 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99821 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00346 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46808 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47312 * 119.99899 * 26 24 22 29 29 H 1.48498 * 109.47014 * 240.00262 * 26 24 22 30 30 H 1.09007 * 109.46638 * 299.93452 * 1 2 3 31 31 H 1.08992 * 109.47563 * 59.93050 * 1 2 3 32 32 H 1.09004 * 109.47100 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.58804 * 294.37582 * 4 2 1 34 34 H 1.09003 * 109.58394 * 54.80159 * 4 2 1 35 35 H 1.09004 * 109.47107 * 299.99885 * 8 6 5 36 36 H 1.08994 * 109.47315 * 60.00032 * 8 6 5 37 37 H 1.09000 * 110.79617 * 241.78224 * 12 10 9 38 38 H 1.09002 * 110.54759 * 118.87355 * 12 10 9 39 39 H 1.09006 * 110.60441 * 241.25479 * 13 12 10 40 40 H 1.08995 * 110.73918 * 118.36202 * 13 12 10 41 41 H 1.09008 * 109.58859 * 293.81127 * 16 5 4 42 42 H 1.09000 * 109.70348 * 173.46523 * 16 5 4 43 43 H 1.09003 * 109.49900 * 185.41596 * 17 16 5 44 44 H 1.08990 * 109.49871 * 65.31214 * 17 16 5 45 45 H 1.09001 * 109.46871 * 305.00249 * 20 18 2 46 46 H 1.09000 * 109.46938 * 64.99758 * 20 18 2 47 47 H 0.97000 * 120.00155 * 359.97438 * 21 20 18 48 48 H 0.97005 * 119.99896 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8289 1.1698 6 6 4.2812 -0.3855 2.1782 7 8 3.7732 0.1058 3.1638 8 6 5.7806 -0.5001 2.0809 9 7 6.3919 0.0475 3.2943 10 6 6.7459 1.3335 3.4103 11 8 6.6097 2.1793 2.5526 12 6 7.3400 1.5645 4.7827 13 6 7.2764 0.1722 5.4431 14 6 6.6479 -0.6979 4.3766 15 8 6.4138 -1.8824 4.4847 16 6 4.1052 -1.4267 -0.0304 17 6 3.5708 -0.6954 -1.2659 18 6 2.0407 -0.7234 -1.2481 19 1 1.6966 -1.7576 -1.2348 20 6 1.5036 -0.0240 -2.4984 21 7 1.8930 -0.7842 -3.6886 22 6 1.5224 -0.3465 -4.9321 23 1 0.9434 0.5593 -5.0354 24 6 1.8917 -1.0665 -6.0599 25 7 2.5977 -2.1702 -5.9341 26 14 1.3868 -0.4692 -7.7563 27 1 0.6038 0.7859 -7.6263 28 1 2.6006 -0.2136 -8.5727 29 1 0.5540 -1.5052 -8.4183 30 1 -0.3633 0.5129 0.8906 31 1 -0.3634 0.5149 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.7638 -0.1574 2.1390 34 1 1.6052 -1.7213 1.2985 35 1 6.0588 -1.5488 1.9759 36 1 6.1321 0.0577 1.2130 37 1 6.7452 2.2837 5.3458 38 1 8.3728 1.9032 4.7004 39 1 6.6500 0.1989 6.3348 40 1 8.2765 -0.1844 5.6889 41 1 3.8375 -2.4820 -0.0861 42 1 5.1897 -1.3268 0.0127 43 1 3.9333 -1.1903 -2.1668 44 1 3.9158 0.3384 -1.2542 45 1 0.4165 0.0338 -2.4436 46 1 1.9184 0.9823 -2.5582 47 1 2.4139 -1.5971 -3.5960 48 1 2.8562 -2.6732 -6.7222 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185643393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:50 Heat of formation + Delta-G solvation = -88.476695 kcal Electronic energy + Delta-G solvation = -29935.342722 eV Core-core repulsion = 25797.740872 eV Total energy + Delta-G solvation = -4137.601850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30309 -40.24209 -38.88843 -38.07339 -36.14622 -35.06539 -34.03092 -33.47045 -32.00491 -30.35585 -28.93763 -26.93771 -26.57817 -26.11149 -23.77054 -22.76648 -22.58390 -21.51314 -20.67259 -19.70016 -19.08491 -18.01578 -17.51082 -17.13134 -16.84288 -16.68737 -15.90264 -15.50540 -15.01149 -14.83065 -14.56891 -14.54334 -14.29666 -14.27252 -13.94942 -13.78075 -13.56060 -13.51802 -13.21686 -12.95892 -12.69586 -12.52375 -12.37279 -11.94634 -11.84731 -11.82187 -11.64924 -11.04597 -11.00771 -10.91801 -10.84232 -10.72463 -10.40787 -10.40580 -10.29783 -10.20174 -9.96636 -9.68161 -9.64811 -8.87731 -8.69143 -6.91349 -5.78045 -3.05738 1.17945 1.94062 2.34195 2.37111 2.92480 3.42425 3.48526 3.50391 3.65596 3.79200 3.99249 4.18016 4.41342 4.57644 4.63928 4.70915 4.83358 4.90646 4.94342 4.97862 4.98945 5.07241 5.13400 5.17142 5.26371 5.40939 5.48267 5.56515 5.67123 5.76472 5.83140 5.88594 5.95230 6.05089 6.19455 6.26986 6.30450 6.40559 6.41029 6.48311 6.59933 6.82099 6.92183 6.94778 7.20036 7.39142 7.70198 7.91855 8.41493 9.52771 10.10915 10.45523 11.45052 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018991 B = 0.002383 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.998636 B =11747.363366 C =12230.660170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 H 0.073 0.927 4 C 0.119 3.881 5 N -0.602 5.602 6 C 0.506 3.494 7 O -0.541 6.541 8 C 0.078 3.922 9 N -0.559 5.559 10 C 0.530 3.470 11 O -0.476 6.476 12 C -0.154 4.154 13 C -0.154 4.154 14 C 0.531 3.469 15 O -0.480 6.480 16 C 0.102 3.898 17 C -0.127 4.127 18 C -0.089 4.089 19 H 0.073 0.927 20 C 0.156 3.844 21 N -0.732 5.732 22 C -0.236 4.236 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.025 0.975 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.003 3.805 24.345 26.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.335 5.335 6 C 0.293 3.707 7 O -0.418 6.418 8 C -0.047 4.047 9 N -0.302 5.302 10 C 0.319 3.681 11 O -0.347 6.347 12 C -0.193 4.193 13 C -0.193 4.193 14 C 0.320 3.680 15 O -0.352 6.352 16 C -0.020 4.020 17 C -0.165 4.165 18 C -0.108 4.108 19 H 0.091 0.909 20 C 0.029 3.971 21 N -0.376 5.376 22 C -0.367 4.367 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.583 5.583 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.110 0.890 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.449 3.976 24.308 26.382 hybrid contribution -0.158 -0.078 -1.238 1.251 sum 9.292 3.899 23.070 25.174 Atomic orbital electron populations 1.21827 0.94285 1.02220 1.02088 1.21465 0.96208 0.99957 0.94082 0.90864 1.21736 0.78235 1.01041 0.99302 1.48096 1.07295 1.60112 1.17995 1.20588 0.89036 0.78050 0.83061 1.90684 1.75088 1.44885 1.31162 1.21651 0.91656 1.03149 0.88221 1.46354 1.55154 1.12427 1.16279 1.20846 0.76266 0.80758 0.90249 1.90809 1.51784 1.46210 1.45903 1.22447 1.05002 0.98836 0.93047 1.22446 1.04673 0.93493 0.98728 1.20837 0.76520 0.87327 0.83283 1.90789 1.50315 1.14099 1.79952 1.21961 0.97717 0.97970 0.84373 1.21949 0.96232 1.01230 0.97075 1.21338 0.94610 1.00242 0.94569 0.90873 1.20754 0.96705 0.94069 0.85584 1.42381 1.65377 1.28999 1.00860 1.19273 1.27493 1.06154 0.83818 0.91235 1.24723 1.00993 0.97561 0.97809 1.69661 1.42903 1.17352 1.28429 0.86131 0.77655 0.77759 0.84752 1.20602 1.21894 1.21906 0.93023 0.91235 0.92462 0.89272 0.91265 0.85787 0.85626 0.85929 0.86026 0.85979 0.86017 0.90519 0.90177 0.89005 0.91594 0.95759 0.96538 0.78329 0.93610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.81 37.16 0.33 -1.47 16 2 C -0.10 -1.29 2.41 -90.50 -0.22 -1.51 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.51 5.72 -3.71 -0.02 1.49 16 5 N -0.60 -7.61 2.97 -172.77 -0.51 -8.12 16 6 C 0.51 6.88 7.77 -10.99 -0.09 6.79 16 7 O -0.54 -8.99 15.84 5.55 0.09 -8.90 16 8 C 0.08 0.82 4.38 -5.20 -0.02 0.80 16 9 N -0.56 -5.68 2.04 -116.64 -0.24 -5.92 16 10 C 0.53 5.16 8.08 -11.08 -0.09 5.07 16 11 O -0.48 -6.41 17.47 5.61 0.10 -6.31 16 12 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 13 C -0.15 -0.66 7.03 -26.94 -0.19 -0.85 16 14 C 0.53 5.00 8.08 -11.09 -0.09 4.91 16 15 O -0.48 -6.14 17.48 5.60 0.10 -6.04 16 16 C 0.10 1.15 6.34 -3.71 -0.02 1.13 16 17 C -0.13 -1.80 5.25 -26.61 -0.14 -1.94 16 18 C -0.09 -1.35 1.73 -90.58 -0.16 -1.51 16 19 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 20 C 0.16 3.05 5.41 -4.04 -0.02 3.03 16 21 N -0.73 -17.97 5.32 -59.91 -0.32 -18.29 16 22 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 25 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 26 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.92 6.30 -51.93 -0.33 0.59 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.21 7.01 -51.93 -0.36 0.85 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.12 1.09 7.63 -51.93 -0.40 0.70 16 36 H 0.13 1.19 7.38 -51.93 -0.38 0.80 16 37 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.08 0.71 5.95 -51.93 -0.31 0.40 16 43 H 0.09 1.48 7.15 -51.93 -0.37 1.11 16 44 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.48 6.14 -51.93 -0.32 0.17 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 9.74 6.84 -40.82 -0.28 9.46 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -36.78 386.81 -7.79 -44.57 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -7.37 Total: 5.10 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: -1.17 Total: 7.85 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.35 Total: -59.42 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.28 Total: -21.25 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.78 -7.79 -44.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.911 kcal (2) G-P(sol) polarization free energy of solvation -36.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds