Wall clock time and date at job start Tue Mar 31 2020 21:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52134 * 2 1 4 4 C 1.53190 * 109.51030 * 120.07376 * 2 1 3 5 5 N 1.46929 * 108.76543 * 65.29925 * 4 2 1 6 6 C 1.34774 * 120.63389 * 233.59219 * 5 4 2 7 7 O 1.21276 * 119.99920 * 0.03114 * 6 5 4 8 8 C 1.50697 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.46503 * 109.47137 * 180.02562 * 8 6 5 10 10 C 1.33878 * 122.75553 * 269.70966 * 9 8 6 11 11 O 1.21221 * 125.40472 * 359.97438 * 10 9 8 12 12 C 1.51315 * 109.20006 * 179.84016 * 10 9 8 13 13 C 1.54224 * 103.55911 * 0.38940 * 12 10 9 14 14 C 1.33875 * 122.76523 * 89.99831 * 9 8 6 15 15 O 1.21227 * 125.39111 * 359.97438 * 14 9 8 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.09002 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47525 * 300.07785 * 1 2 3 32 32 H 1.08997 * 109.47533 * 60.08114 * 1 2 3 33 33 H 1.09006 * 109.58476 * 305.52629 * 4 2 1 34 34 H 1.08996 * 109.71467 * 185.16224 * 4 2 1 35 35 H 1.09006 * 109.47319 * 300.00573 * 8 6 5 36 36 H 1.09006 * 109.47139 * 60.00273 * 8 6 5 37 37 H 1.08999 * 110.80234 * 241.77837 * 12 10 9 38 38 H 1.09005 * 110.54960 * 118.87493 * 12 10 9 39 39 H 1.09005 * 110.60584 * 241.25978 * 13 12 10 40 40 H 1.09000 * 110.74282 * 118.35366 * 13 12 10 41 41 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 42 42 H 1.09001 * 109.70241 * 66.24591 * 16 5 4 43 43 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 44 44 H 1.08991 * 109.52255 * 174.60248 * 17 16 5 45 45 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 46 46 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 47 47 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7236 1.2496 5 7 1.6515 -2.1379 1.1698 6 6 0.9748 -2.7216 2.1786 7 8 0.6816 -2.0785 3.1641 8 6 0.5823 -4.1733 2.0820 9 7 -0.1385 -4.5662 3.2954 10 6 0.4779 -5.0610 4.3759 11 8 1.6719 -5.2408 4.4826 12 6 -0.5519 -5.3570 5.4444 13 6 -1.8853 -4.9526 4.7833 14 6 -1.4683 -4.4652 3.4129 15 8 -2.2191 -4.0487 2.5571 16 6 2.0137 -2.9039 -0.0306 17 6 1.5027 -2.1557 -1.2659 18 6 2.0407 -0.7231 -1.2483 19 1 3.1304 -0.7446 -1.2352 20 6 1.5606 0.0170 -2.4984 21 7 2.1472 -0.6035 -3.6887 22 6 1.8583 -0.1078 -4.9321 23 1 1.1984 0.7409 -5.0352 24 6 2.4137 -0.6960 -6.0602 25 7 3.2176 -1.7307 -5.9346 26 14 2.0202 -0.0193 -7.7562 27 1 2.7326 -0.8183 -8.7855 28 1 0.5564 -0.0994 -7.9936 29 1 2.4582 1.3972 -7.8379 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.6011 -0.2727 2.1389 34 1 3.1276 -0.6463 1.3004 35 1 -0.0612 -4.3188 1.2143 36 1 1.4780 -4.7857 1.9767 37 1 -0.3683 -4.7572 6.3358 38 1 -0.5527 -6.4187 5.6913 39 1 -2.3649 -4.1516 5.3458 40 1 -2.5505 -5.8120 4.6987 41 1 1.5550 -3.8916 0.0141 42 1 3.0973 -3.0066 -0.0880 43 1 0.4129 -2.1351 -1.2538 44 1 1.8471 -2.6626 -2.1671 45 1 1.8690 1.0610 -2.4434 46 1 0.4736 -0.0379 -2.5581 47 1 2.7396 -1.3659 -3.5963 48 1 3.4222 -2.0818 -5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185643394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:57 Heat of formation + Delta-G solvation = -84.934564 kcal Electronic energy + Delta-G solvation = -30247.624050 eV Core-core repulsion = 26110.175798 eV Total energy + Delta-G solvation = -4137.448252 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33600 -40.41907 -38.91642 -38.19969 -36.17498 -35.20462 -34.07030 -33.49546 -31.89870 -30.27203 -28.87371 -26.97163 -26.60359 -26.16644 -23.53765 -23.15452 -22.79231 -21.89056 -20.80589 -19.52261 -18.51478 -18.05138 -17.60079 -17.25145 -16.88256 -16.79100 -15.82151 -15.66131 -15.09743 -14.97603 -14.65023 -14.57123 -14.33785 -14.29691 -14.18309 -13.89408 -13.67488 -13.54405 -13.23063 -13.00100 -12.97874 -12.60797 -12.49154 -12.28318 -11.84505 -11.66931 -11.47959 -11.07071 -11.03747 -10.78289 -10.72933 -10.71342 -10.43679 -10.43336 -10.26447 -10.20549 -9.95842 -9.71168 -9.17990 -8.87419 -8.73741 -6.99743 -6.11083 -3.10167 1.15264 1.90914 2.31288 2.33788 2.88365 3.51425 3.54808 3.63072 3.72182 3.76628 3.96814 4.13409 4.38852 4.59611 4.62850 4.66173 4.78678 4.84114 4.92416 4.93554 4.96764 5.00981 5.11151 5.14067 5.15319 5.33407 5.46152 5.59956 5.64807 5.70051 5.74473 5.76817 5.90523 5.94857 6.10743 6.18898 6.29322 6.33806 6.36106 6.37655 6.53596 6.71055 6.84470 6.92001 7.15468 7.36260 7.80864 7.88347 8.75343 9.23013 10.09205 10.24340 11.37598 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002382 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.907895 B =11749.849352 C =11910.630306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.118 3.882 5 N -0.599 5.599 6 C 0.507 3.493 7 O -0.539 6.539 8 C 0.078 3.922 9 N -0.559 5.559 10 C 0.531 3.469 11 O -0.480 6.480 12 C -0.154 4.154 13 C -0.154 4.154 14 C 0.530 3.470 15 O -0.476 6.476 16 C 0.103 3.897 17 C -0.128 4.128 18 C -0.090 4.090 19 H 0.071 0.929 20 C 0.164 3.836 21 N -0.743 5.743 22 C -0.329 4.329 23 H 0.063 0.937 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.079 2.921 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.296 1.296 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.018 0.982 46 H 0.023 0.977 47 H 0.366 0.634 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 -8.264 24.448 26.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.101 0.899 4 C -0.004 4.004 5 N -0.333 5.333 6 C 0.293 3.707 7 O -0.416 6.416 8 C -0.047 4.047 9 N -0.302 5.302 10 C 0.320 3.680 11 O -0.352 6.352 12 C -0.193 4.193 13 C -0.193 4.193 14 C 0.319 3.681 15 O -0.347 6.347 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.109 4.109 19 H 0.089 0.911 20 C 0.037 3.963 21 N -0.389 5.389 22 C -0.460 4.460 23 H 0.081 0.919 24 C -0.243 4.243 25 N -0.591 5.591 26 Si 0.910 3.090 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.036 0.964 46 H 0.041 0.959 47 H 0.199 0.801 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.561 -7.779 22.876 25.318 hybrid contribution -0.014 0.115 1.439 1.443 sum -7.576 -7.664 24.315 26.596 Atomic orbital electron populations 1.21853 0.94729 1.02005 1.01558 1.21467 0.96758 0.99517 0.93987 0.89887 1.21711 0.99512 0.79827 0.99342 1.48038 1.55418 1.11934 1.17877 1.20563 0.77935 0.89115 0.83064 1.90684 1.54884 1.64922 1.31135 1.21653 1.00051 0.94776 0.88234 1.46352 1.10000 1.57515 1.16341 1.20834 0.89157 0.74665 0.83295 1.90787 1.14608 1.49795 1.79961 1.22445 0.92187 1.06002 0.98692 1.22452 0.98783 1.05047 0.93068 1.20852 0.80985 0.76076 0.90214 1.90810 1.55769 1.42162 1.45955 1.21937 1.00968 0.94646 0.84426 1.21975 1.01666 0.96096 0.96878 1.21323 1.00188 0.94611 0.94731 0.91079 1.20644 0.95953 0.94605 0.85129 1.42382 1.57277 1.37447 1.01785 1.20031 1.27086 1.13688 0.85232 0.91886 1.25758 0.98235 0.97982 1.02375 1.70898 1.37970 1.25222 1.25000 0.83247 0.75396 0.74917 0.75420 1.21032 1.22297 1.22301 0.92645 0.93280 0.91887 0.89138 0.91305 0.85719 0.85808 0.85935 0.86031 0.85953 0.85985 0.90182 0.90569 0.91069 0.89612 0.96394 0.95935 0.80071 0.93519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.38 37.16 0.31 -1.66 16 2 C -0.10 -1.28 2.72 -90.50 -0.25 -1.53 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 1.47 5.83 -3.71 -0.02 1.45 16 5 N -0.60 -7.35 2.41 -172.76 -0.42 -7.77 16 6 C 0.51 6.73 7.77 -10.99 -0.09 6.64 16 7 O -0.54 -8.78 15.84 5.56 0.09 -8.69 16 8 C 0.08 0.80 4.38 -5.19 -0.02 0.78 16 9 N -0.56 -5.60 2.04 -116.62 -0.24 -5.84 16 10 C 0.53 4.94 8.08 -11.08 -0.09 4.85 16 11 O -0.48 -6.08 17.47 5.61 0.10 -5.98 16 12 C -0.15 -0.64 7.03 -26.94 -0.19 -0.83 16 13 C -0.15 -0.67 7.03 -26.94 -0.19 -0.86 16 14 C 0.53 5.09 8.08 -11.09 -0.09 5.00 16 15 O -0.48 -6.34 17.48 5.60 0.10 -6.24 16 16 C 0.10 1.13 6.34 -3.71 -0.02 1.11 16 17 C -0.13 -1.79 4.91 -26.61 -0.13 -1.92 16 18 C -0.09 -1.36 1.96 -90.58 -0.18 -1.54 16 19 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 20 C 0.16 3.25 5.19 -4.05 -0.02 3.22 16 21 N -0.74 -18.36 5.32 -59.91 -0.32 -18.68 16 22 C -0.33 -9.30 9.99 -15.06 -0.15 -9.45 16 23 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 25 N -0.94 -28.97 13.70 55.49 0.76 -28.21 16 26 Si 1.08 25.97 29.92 -169.99 -5.09 20.89 16 27 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 29 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.80 5.97 -51.93 -0.31 0.49 16 31 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.06 0.90 6.58 -51.93 -0.34 0.56 16 33 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.12 1.16 7.38 -51.93 -0.38 0.78 16 36 H 0.12 1.07 7.62 -51.93 -0.40 0.68 16 37 H 0.12 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.12 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.12 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.04 6.33 -51.93 -0.33 0.71 16 44 H 0.09 1.35 7.15 -51.93 -0.37 0.98 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.47 6.74 -51.93 -0.35 0.12 16 47 H 0.37 9.09 5.68 -40.82 -0.23 8.86 16 48 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -37.94 381.08 -7.59 -45.53 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.09 Total: 5.42 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.22 Total: 3.84 kcal Atomic # 7 Polarization: -60.29 SS G_CDS: -0.21 Total: -60.50 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: 0.28 Total: -20.92 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.09 Total: 20.89 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.94 -7.59 -45.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.405 kcal (2) G-P(sol) polarization free energy of solvation -37.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds