Wall clock time and date at job start Tue Mar 31 2020 21:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.52134 * 2 1 4 4 C 1.53190 * 109.51030 * 120.07376 * 2 1 3 5 5 N 1.46929 * 108.76543 * 65.29925 * 4 2 1 6 6 C 1.34774 * 120.63389 * 233.59219 * 5 4 2 7 7 O 1.21276 * 119.99920 * 0.03114 * 6 5 4 8 8 C 1.50697 * 119.99902 * 180.02562 * 6 5 4 9 9 N 1.46503 * 109.47137 * 180.02562 * 8 6 5 10 10 C 1.33878 * 122.75553 * 269.70966 * 9 8 6 11 11 O 1.21221 * 125.40472 * 359.97438 * 10 9 8 12 12 C 1.51315 * 109.20006 * 179.84016 * 10 9 8 13 13 C 1.54224 * 103.55911 * 0.38940 * 12 10 9 14 14 C 1.33875 * 122.76523 * 89.99831 * 9 8 6 15 15 O 1.21227 * 125.39111 * 359.97438 * 14 9 8 16 16 C 1.46935 * 118.73495 * 53.61812 * 5 4 2 17 17 C 1.53193 * 108.77565 * 306.39194 * 16 5 4 18 18 C 1.53037 * 109.31342 * 54.63238 * 17 16 5 19 19 H 1.09002 * 109.46037 * 58.64662 * 18 17 16 20 20 C 1.53001 * 109.45929 * 178.61351 * 18 17 16 21 21 N 1.46490 * 109.47264 * 295.02805 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.09002 * 109.47305 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47525 * 300.07785 * 1 2 3 32 32 H 1.08997 * 109.47533 * 60.08114 * 1 2 3 33 33 H 1.09006 * 109.58476 * 305.52629 * 4 2 1 34 34 H 1.08996 * 109.71467 * 185.16224 * 4 2 1 35 35 H 1.09006 * 109.47319 * 300.00573 * 8 6 5 36 36 H 1.09006 * 109.47139 * 60.00273 * 8 6 5 37 37 H 1.08999 * 110.80234 * 241.77837 * 12 10 9 38 38 H 1.09005 * 110.54960 * 118.87493 * 12 10 9 39 39 H 1.09005 * 110.60584 * 241.25978 * 13 12 10 40 40 H 1.09000 * 110.74282 * 118.35366 * 13 12 10 41 41 H 1.08995 * 109.58382 * 186.59914 * 16 5 4 42 42 H 1.09001 * 109.70241 * 66.24591 * 16 5 4 43 43 H 1.09005 * 109.49420 * 294.68481 * 17 16 5 44 44 H 1.08991 * 109.52255 * 174.60248 * 17 16 5 45 45 H 1.09003 * 109.46836 * 175.02512 * 20 18 17 46 46 H 1.08999 * 109.47071 * 55.03552 * 20 18 17 47 47 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 48 48 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7236 1.2496 5 7 1.6515 -2.1379 1.1698 6 6 0.9748 -2.7216 2.1786 7 8 0.6816 -2.0785 3.1641 8 6 0.5823 -4.1733 2.0820 9 7 -0.1385 -4.5662 3.2954 10 6 0.4779 -5.0610 4.3759 11 8 1.6719 -5.2408 4.4826 12 6 -0.5519 -5.3570 5.4444 13 6 -1.8853 -4.9526 4.7833 14 6 -1.4683 -4.4652 3.4129 15 8 -2.2191 -4.0487 2.5571 16 6 2.0137 -2.9039 -0.0306 17 6 1.5027 -2.1557 -1.2659 18 6 2.0407 -0.7231 -1.2483 19 1 3.1304 -0.7446 -1.2352 20 6 1.5606 0.0170 -2.4984 21 7 2.1472 -0.6035 -3.6887 22 6 1.8583 -0.1078 -4.9321 23 1 1.1984 0.7409 -5.0352 24 6 2.4137 -0.6960 -6.0602 25 7 3.2176 -1.7307 -5.9346 26 14 2.0202 -0.0193 -7.7562 27 1 2.7326 -0.8183 -8.7855 28 1 0.5564 -0.0994 -7.9936 29 1 2.4582 1.3972 -7.8379 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5151 0.8893 32 1 -0.3634 0.5125 -0.8907 33 1 1.6011 -0.2727 2.1389 34 1 3.1276 -0.6463 1.3004 35 1 -0.0612 -4.3188 1.2143 36 1 1.4780 -4.7857 1.9767 37 1 -0.3683 -4.7572 6.3358 38 1 -0.5527 -6.4187 5.6913 39 1 -2.3649 -4.1516 5.3458 40 1 -2.5505 -5.8120 4.6987 41 1 1.5550 -3.8916 0.0141 42 1 3.0973 -3.0066 -0.0880 43 1 0.4129 -2.1351 -1.2538 44 1 1.8471 -2.6626 -2.1671 45 1 1.8690 1.0610 -2.4434 46 1 0.4736 -0.0379 -2.5581 47 1 2.7396 -1.3659 -3.5963 48 1 3.4222 -2.0818 -5.0538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185643394.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:54 Heat of formation + Delta-G solvation = -110.914612 kcal Electronic energy + Delta-G solvation = -30248.750629 eV Core-core repulsion = 26110.175798 eV Total energy + Delta-G solvation = -4138.574831 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.04523 -41.47066 -39.70851 -39.38934 -36.99917 -36.84865 -35.20385 -34.41794 -33.26275 -31.93499 -29.72913 -28.41509 -27.31364 -27.14664 -25.44071 -24.35255 -23.37099 -23.29476 -21.81334 -20.37720 -19.74956 -19.29297 -18.83606 -18.40969 -17.65240 -17.57914 -16.87026 -16.70614 -16.58778 -16.18719 -15.77220 -15.62349 -15.42563 -15.32709 -15.16382 -15.01611 -14.93727 -14.54067 -14.34730 -14.25673 -13.80934 -13.72791 -13.55397 -13.39570 -12.86304 -12.73151 -12.69108 -12.53323 -12.20143 -12.12624 -11.92530 -11.84958 -11.80783 -11.70575 -11.50535 -11.43388 -11.17684 -11.16215 -10.91488 -10.68385 -9.80762 -9.09772 -8.40228 -5.33479 0.46271 1.19557 1.31678 1.57690 1.64255 1.67107 1.83806 1.97413 2.70131 3.17008 3.20141 3.24075 3.38560 3.56238 3.61010 3.61745 3.69074 3.88117 3.90930 3.98093 4.06398 4.11794 4.16768 4.18045 4.29067 4.34554 4.52050 4.59975 4.62068 4.69914 4.71693 4.74292 4.85090 4.88452 4.90397 4.94721 5.04092 5.05546 5.11022 5.18154 5.37433 5.48234 5.57797 5.70658 6.14813 6.25081 6.50714 6.64486 6.86464 7.10184 8.00792 8.11424 9.12187 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.002382 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.907895 B =11749.849352 C =11910.630306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.092 0.908 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.502 3.498 7 O -0.574 6.574 8 C 0.073 3.927 9 N -0.567 5.567 10 C 0.523 3.477 11 O -0.522 6.522 12 C -0.139 4.139 13 C -0.140 4.140 14 C 0.520 3.480 15 O -0.524 6.524 16 C 0.108 3.892 17 C -0.122 4.122 18 C -0.079 4.079 19 H 0.071 0.929 20 C 0.165 3.835 21 N -0.753 5.753 22 C -0.336 4.336 23 H 0.061 0.939 24 C -0.102 4.102 25 N -0.973 5.973 26 Si 1.126 2.874 27 H -0.291 1.291 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.045 0.955 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.139 0.861 40 H 0.155 0.845 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.013 0.987 46 H 0.017 0.983 47 H 0.363 0.637 48 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.552 -8.983 26.124 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.290 3.710 7 O -0.453 6.453 8 C -0.052 4.052 9 N -0.309 5.309 10 C 0.315 3.685 11 O -0.396 6.396 12 C -0.178 4.178 13 C -0.179 4.179 14 C 0.312 3.688 15 O -0.398 6.398 16 C -0.014 4.014 17 C -0.160 4.160 18 C -0.098 4.098 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.398 5.398 22 C -0.467 4.467 23 H 0.079 0.921 24 C -0.293 4.293 25 N -0.621 5.621 26 Si 0.951 3.049 27 H -0.217 1.217 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.172 0.828 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.031 0.969 46 H 0.035 0.965 47 H 0.196 0.804 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.345 -8.491 24.598 27.328 hybrid contribution 0.204 0.386 0.947 1.042 sum -8.142 -8.105 25.545 28.009 Atomic orbital electron populations 1.21783 0.95106 1.01315 1.01351 1.21395 0.96268 0.99922 0.93250 0.88949 1.21672 1.00264 0.79927 0.98284 1.48100 1.54991 1.11961 1.17997 1.21069 0.77238 0.90130 0.82574 1.90655 1.56241 1.65979 1.32470 1.21719 1.01075 0.93056 0.89359 1.46650 1.10513 1.57305 1.16463 1.21789 0.89469 0.73371 0.83903 1.90763 1.16563 1.51571 1.80670 1.22588 0.89696 1.08349 0.97149 1.22597 0.99383 1.06540 0.89349 1.21849 0.80410 0.74864 0.91667 1.90783 1.56633 1.44418 1.47928 1.21975 1.01909 0.95123 0.82375 1.21858 1.01056 0.95485 0.97641 1.21195 1.00098 0.95079 0.93386 0.91047 1.20754 0.95290 0.94575 0.85527 1.42544 1.57421 1.37535 1.02287 1.20361 1.26300 1.13287 0.86788 0.92098 1.27144 0.98119 0.97965 1.06099 1.70995 1.39766 1.26710 1.24652 0.82649 0.76002 0.74975 0.71312 1.21699 1.20559 1.20531 0.93577 0.92674 0.92810 0.89846 0.89867 0.84989 0.84245 0.84186 0.82698 0.84331 0.82763 0.87610 0.89204 0.91930 0.91509 0.96929 0.96538 0.80406 0.94393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.38 71.98 0.60 -3.16 16 2 C -0.09 -2.27 2.72 -10.72 -0.03 -2.30 16 3 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.12 2.89 5.83 86.36 0.50 3.39 16 5 N -0.60 -14.20 2.41 -818.89 -1.97 -16.17 16 6 C 0.50 13.12 7.77 87.66 0.68 13.80 16 7 O -0.57 -18.67 15.84 -3.02 -0.05 -18.72 16 8 C 0.07 1.47 4.38 85.63 0.38 1.84 16 9 N -0.57 -10.81 2.04 -760.71 -1.55 -12.36 16 10 C 0.52 8.93 8.08 87.99 0.71 9.64 16 11 O -0.52 -12.82 17.47 -2.85 -0.05 -12.87 16 12 C -0.14 -0.68 7.03 30.46 0.21 -0.47 16 13 C -0.14 -0.75 7.03 30.46 0.21 -0.54 16 14 C 0.52 9.38 8.08 87.99 0.71 10.09 16 15 O -0.52 -13.90 17.48 -2.87 -0.05 -13.95 16 16 C 0.11 2.26 6.34 86.36 0.55 2.81 16 17 C -0.12 -3.40 4.91 30.67 0.15 -3.25 16 18 C -0.08 -2.37 1.96 -10.77 -0.02 -2.39 16 19 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 20 C 0.16 6.58 5.19 86.38 0.45 7.03 16 21 N -0.75 -37.75 5.32 -343.47 -1.83 -39.57 16 22 C -0.34 -19.11 9.99 84.03 0.84 -18.27 16 23 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 24 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 25 N -0.97 -60.36 13.70 21.65 0.30 -60.06 16 26 Si 1.13 52.16 29.92 68.60 2.05 54.21 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 29 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 30 H 0.05 1.33 5.97 -2.39 -0.01 1.32 16 31 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.05 1.54 6.58 -2.39 -0.02 1.53 16 33 H 0.08 2.17 7.01 -2.38 -0.02 2.16 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.13 2.41 7.38 -2.38 -0.02 2.39 16 36 H 0.14 2.29 7.62 -2.38 -0.02 2.27 16 37 H 0.14 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.16 -0.20 8.14 -2.38 -0.02 -0.21 16 39 H 0.14 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.11 1.69 5.93 -2.39 -0.01 1.67 16 42 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.06 1.85 6.33 -2.38 -0.02 1.83 16 44 H 0.07 2.14 7.15 -2.39 -0.02 2.12 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.02 0.69 6.74 -2.39 -0.02 0.68 16 47 H 0.36 18.44 5.68 -92.71 -0.53 17.92 16 48 H 0.25 15.02 6.77 -92.71 -0.63 14.39 16 Total: -1.00 -84.60 381.08 3.87 -80.73 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.60 Total: 25.98 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 6.41 Total: 12.79 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.06 Total: -128.17 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -0.15 Total: -45.53 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.05 Total: 54.21 kcal Total: -84.60 3.87 -80.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643394.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.185 kcal (2) G-P(sol) polarization free energy of solvation -84.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds