Wall clock time and date at job start Tue Mar 31 2020 21:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49857 * 2 1 4 4 C 1.53195 * 109.52312 * 239.91827 * 2 1 3 5 5 N 1.47207 * 108.85456 * 294.68372 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 N 1.46501 * 109.47496 * 180.02562 * 8 6 5 10 10 C 1.33880 * 122.76378 * 269.71617 * 9 8 6 11 11 O 1.21219 * 125.39377 * 359.97438 * 10 9 8 12 12 C 1.51317 * 109.20477 * 179.83749 * 10 9 8 13 13 C 1.54229 * 103.55463 * 0.38474 * 12 10 9 14 14 C 1.33881 * 122.76061 * 90.00085 * 9 8 6 15 15 O 1.21226 * 125.39605 * 359.97438 * 14 9 8 16 16 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 17 17 C 1.53191 * 108.89109 * 53.54119 * 16 5 4 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 5 19 19 H 1.09004 * 109.45942 * 301.34050 * 18 17 16 20 20 C 1.52999 * 109.45926 * 181.37380 * 18 17 16 21 21 N 1.46507 * 109.47439 * 65.00278 * 20 18 17 22 22 C 1.36930 * 120.00216 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00211 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99889 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46638 * 90.00024 * 26 24 22 28 28 H 1.48491 * 109.47191 * 210.00186 * 26 24 22 29 29 H 1.48502 * 109.47052 * 330.00190 * 26 24 22 30 30 H 1.08996 * 109.47299 * 299.93509 * 1 2 3 31 31 H 1.08997 * 109.46852 * 59.93523 * 1 2 3 32 32 H 1.09000 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58670 * 54.45735 * 4 2 1 34 34 H 1.08997 * 109.58526 * 174.87802 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08999 * 110.79198 * 241.77807 * 12 10 9 38 38 H 1.09001 * 110.41174 * 118.81434 * 12 10 9 39 39 H 1.08994 * 110.60900 * 241.25577 * 13 12 10 40 40 H 1.09003 * 110.60145 * 118.29462 * 13 12 10 41 41 H 1.09002 * 109.58861 * 293.68122 * 16 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 16 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 17 16 5 44 44 H 1.09000 * 109.49553 * 185.30642 * 17 16 5 45 45 H 1.09003 * 109.47169 * 184.99579 * 20 18 17 46 46 H 1.09001 * 109.47280 * 304.99784 * 20 18 17 47 47 H 0.97002 * 119.99289 * 359.97438 * 21 20 18 48 48 H 0.96995 * 119.99805 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2494 5 7 1.6526 -2.1412 -1.1712 6 6 0.9758 -2.7278 -2.1782 7 8 0.6823 -2.0875 -3.1655 8 6 0.5837 -4.1794 -2.0775 9 7 -0.1363 -4.5761 -3.2902 10 6 -1.4667 -4.4811 -3.4066 11 8 -2.2187 -4.0684 -2.5502 12 6 -1.8823 -4.9674 -4.7779 13 6 -0.5484 -5.3734 -5.4371 14 6 0.4813 -5.0686 -4.3711 15 8 1.6762 -5.2423 -4.4789 16 6 2.0153 -2.9038 0.0312 17 6 1.5037 -2.1557 1.2662 18 6 2.0408 -0.7228 1.2485 19 1 3.1305 -0.7436 1.2358 20 6 1.5597 0.0173 2.4982 21 7 2.1468 -0.6021 3.6890 22 6 1.8573 -0.1062 4.9321 23 1 1.1964 0.7419 5.0347 24 6 2.4132 -0.6934 6.0604 25 7 3.2190 -1.7266 5.9353 26 14 2.0187 -0.0164 7.7562 27 1 0.8171 -0.7023 8.2957 28 1 3.1712 -0.2504 8.6629 29 1 1.7542 1.4415 7.6579 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6015 -0.2733 -2.1388 34 1 3.1281 -0.6457 -1.2976 35 1 1.4795 -4.7912 -1.9708 36 1 -0.0596 -4.3227 -1.2094 37 1 -2.3618 -4.1681 -5.3430 38 1 -2.5451 -5.8284 -4.6912 39 1 -0.3643 -4.7763 -6.3301 40 1 -0.5477 -6.4364 -5.6783 41 1 3.0993 -3.0036 0.0875 42 1 1.5592 -3.8928 -0.0120 43 1 0.4139 -2.1358 1.2540 44 1 1.8482 -2.6628 2.1674 45 1 1.8672 1.0616 2.4429 46 1 0.4728 -0.0388 2.5579 47 1 2.7401 -1.3640 3.5968 48 1 3.6071 -2.1371 6.7237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185643395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:05 Heat of formation + Delta-G solvation = -85.454306 kcal Electronic energy + Delta-G solvation = -30194.526110 eV Core-core repulsion = 26057.055321 eV Total energy + Delta-G solvation = -4137.470789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.30292 -40.33776 -38.88727 -38.12410 -36.14395 -35.01326 -33.99640 -33.32888 -31.79986 -30.35543 -28.83608 -27.05317 -26.57666 -26.19842 -23.71093 -23.04459 -22.76170 -21.70741 -20.70600 -19.47705 -18.45892 -18.01202 -17.56006 -17.09412 -16.84318 -16.67728 -15.75324 -15.60736 -15.09139 -14.87795 -14.54481 -14.47931 -14.30049 -14.25037 -14.04623 -13.89454 -13.64965 -13.49701 -13.19936 -12.96313 -12.60675 -12.53796 -12.44347 -12.18388 -11.82465 -11.59468 -11.41120 -11.06886 -11.02593 -10.93775 -10.79719 -10.71535 -10.40458 -10.37561 -10.25191 -10.17811 -9.99126 -9.65825 -9.64703 -8.86818 -8.67819 -6.91528 -5.77735 -3.05522 1.18126 1.94326 2.34645 2.38855 2.93521 3.42963 3.48409 3.49784 3.65707 3.79239 3.99292 4.19005 4.41619 4.57986 4.64238 4.70941 4.83688 4.91314 4.97548 4.98567 5.00020 5.09645 5.13634 5.16999 5.21740 5.41945 5.52244 5.59745 5.70180 5.77072 5.82762 5.84456 6.03177 6.07474 6.18129 6.28224 6.36733 6.40784 6.43172 6.45434 6.64121 6.80091 6.93313 6.94949 7.21709 7.39494 7.69800 7.93605 8.41855 9.53026 10.11153 10.45800 11.45316 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002376 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.458224 B =11779.520616 C =11947.059184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.083 0.917 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.507 3.493 7 O -0.540 6.540 8 C 0.078 3.922 9 N -0.559 5.559 10 C 0.530 3.470 11 O -0.476 6.476 12 C -0.154 4.154 13 C -0.154 4.154 14 C 0.531 3.469 15 O -0.480 6.480 16 C 0.102 3.898 17 C -0.128 4.128 18 C -0.088 4.088 19 H 0.072 0.928 20 C 0.158 3.842 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.018 0.982 46 H 0.022 0.978 47 H 0.383 0.617 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.444 -8.610 -24.329 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 H 0.101 0.899 4 C -0.003 4.003 5 N -0.333 5.333 6 C 0.293 3.707 7 O -0.418 6.418 8 C -0.047 4.047 9 N -0.302 5.302 10 C 0.319 3.681 11 O -0.347 6.347 12 C -0.193 4.193 13 C -0.193 4.193 14 C 0.320 3.680 15 O -0.352 6.352 16 C -0.020 4.020 17 C -0.166 4.166 18 C -0.107 4.107 19 H 0.091 0.909 20 C 0.031 3.969 21 N -0.376 5.376 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.087 0.913 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.088 0.912 44 H 0.108 0.892 45 H 0.035 0.965 46 H 0.040 0.960 47 H 0.217 0.783 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.409 -8.026 -24.289 26.632 hybrid contribution 0.145 0.157 1.238 1.256 sum -7.264 -7.869 -23.051 25.417 Atomic orbital electron populations 1.21852 0.94810 1.01991 1.01492 1.21478 0.96703 0.99514 0.94095 0.89908 1.21758 0.99512 0.79739 0.99328 1.48116 1.55360 1.11937 1.17866 1.20550 0.77948 0.89068 0.83105 1.90683 1.54967 1.65103 1.31029 1.21657 1.00052 0.94793 0.88209 1.46353 1.09938 1.57531 1.16374 1.20846 0.81006 0.76056 0.90223 1.90808 1.55701 1.42250 1.45934 1.22455 0.98787 1.05015 0.93091 1.22451 0.92209 1.05922 0.98755 1.20835 0.89170 0.74696 0.83269 1.90788 1.14557 1.49920 1.79888 1.21952 1.00993 0.94670 0.84421 1.21983 1.01520 0.96138 0.97001 1.21301 1.00300 0.94576 0.94541 0.90940 1.20715 0.95937 0.94665 0.85609 1.42378 1.56741 1.37658 1.00848 1.19228 1.22900 1.10857 0.83844 0.91294 1.24720 1.00091 0.98430 0.97800 1.69648 1.35667 1.24527 1.28528 0.86202 0.77248 0.78280 0.84548 1.21753 1.21794 1.20813 0.91866 0.93397 0.92647 0.89250 0.91276 0.85828 0.85688 0.85927 0.86044 0.85971 0.86031 0.90551 0.90278 0.91204 0.89152 0.96467 0.96041 0.78319 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.39 37.16 0.31 -1.65 16 2 C -0.10 -1.28 2.72 -90.50 -0.25 -1.53 16 3 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 4 C 0.12 1.48 5.84 -3.56 -0.02 1.46 16 5 N -0.60 -7.41 2.43 -172.54 -0.42 -7.83 16 6 C 0.51 6.78 7.77 -10.99 -0.09 6.69 16 7 O -0.54 -8.86 15.86 5.56 0.09 -8.77 16 8 C 0.08 0.81 4.38 -5.19 -0.02 0.79 16 9 N -0.56 -5.64 2.04 -116.62 -0.24 -5.88 16 10 C 0.53 5.12 8.08 -11.08 -0.09 5.03 16 11 O -0.48 -6.36 17.47 5.61 0.10 -6.26 16 12 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 13 C -0.15 -0.65 7.03 -26.94 -0.19 -0.84 16 14 C 0.53 4.99 8.08 -11.09 -0.09 4.90 16 15 O -0.48 -6.13 17.48 5.60 0.10 -6.03 16 16 C 0.10 1.14 6.33 -3.71 -0.02 1.11 16 17 C -0.13 -1.80 4.91 -26.61 -0.13 -1.93 16 18 C -0.09 -1.34 1.96 -90.58 -0.18 -1.51 16 19 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 20 C 0.16 3.08 5.18 -4.04 -0.02 3.06 16 21 N -0.73 -17.98 5.32 -59.90 -0.32 -18.30 16 22 C -0.24 -6.57 9.99 -15.06 -0.15 -6.73 16 23 H 0.07 1.88 7.83 -52.48 -0.41 1.46 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -27.84 13.06 55.49 0.72 -27.11 16 26 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.06 0.89 6.58 -51.93 -0.34 0.55 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.79 5.98 -51.93 -0.31 0.48 16 33 H 0.09 1.19 7.02 -51.93 -0.36 0.83 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.12 1.09 7.63 -51.93 -0.40 0.69 16 36 H 0.13 1.17 7.38 -51.93 -0.38 0.79 16 37 H 0.12 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.12 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.08 0.70 5.93 -51.93 -0.31 0.39 16 43 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 44 H 0.09 1.45 7.15 -51.93 -0.37 1.08 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.02 0.43 6.74 -51.93 -0.35 0.08 16 47 H 0.38 9.74 6.85 -40.82 -0.28 9.46 16 48 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 382.86 15.07 5.77 5.77 Total: -1.00 -36.66 382.86 -7.65 -44.31 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.21 Total: 5.31 kcal Atomic # 6 Polarization: 8.69 SS G_CDS: -1.22 Total: 7.47 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.25 Total: -59.12 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: 0.28 Total: -21.06 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.66 -7.65 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.149 kcal (2) G-P(sol) polarization free energy of solvation -36.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds