Wall clock time and date at job start Tue Mar 31 2020 21:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.49857 * 2 1 4 4 C 1.53195 * 109.52312 * 239.91827 * 2 1 3 5 5 N 1.47207 * 108.85456 * 294.68372 * 4 2 1 6 6 C 1.34773 * 120.81153 * 126.34215 * 5 4 2 7 7 O 1.21281 * 120.00152 * 0.14258 * 6 5 4 8 8 C 1.50700 * 119.99924 * 180.13388 * 6 5 4 9 9 N 1.46501 * 109.47496 * 180.02562 * 8 6 5 10 10 C 1.33880 * 122.76378 * 269.71617 * 9 8 6 11 11 O 1.21219 * 125.39377 * 359.97438 * 10 9 8 12 12 C 1.51317 * 109.20477 * 179.83749 * 10 9 8 13 13 C 1.54229 * 103.55463 * 0.38474 * 12 10 9 14 14 C 1.33881 * 122.76061 * 90.00085 * 9 8 6 15 15 O 1.21226 * 125.39605 * 359.97438 * 14 9 8 16 16 C 1.46926 * 118.55531 * 306.47735 * 5 4 2 17 17 C 1.53191 * 108.89109 * 53.54119 * 16 5 4 18 18 C 1.53035 * 109.31327 * 305.29292 * 17 16 5 19 19 H 1.09004 * 109.45942 * 301.34050 * 18 17 16 20 20 C 1.52999 * 109.45926 * 181.37380 * 18 17 16 21 21 N 1.46507 * 109.47439 * 65.00278 * 20 18 17 22 22 C 1.36930 * 120.00216 * 180.02562 * 21 20 18 23 23 H 1.08006 * 120.00211 * 359.97438 * 22 21 20 24 24 C 1.38812 * 119.99889 * 179.97438 * 22 21 20 25 25 N 1.31622 * 120.00070 * 0.02562 * 24 22 21 26 26 Si 1.86807 * 120.00016 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.46638 * 90.00024 * 26 24 22 28 28 H 1.48491 * 109.47191 * 210.00186 * 26 24 22 29 29 H 1.48502 * 109.47052 * 330.00190 * 26 24 22 30 30 H 1.08996 * 109.47299 * 299.93509 * 1 2 3 31 31 H 1.08997 * 109.46852 * 59.93523 * 1 2 3 32 32 H 1.09000 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58670 * 54.45735 * 4 2 1 34 34 H 1.08997 * 109.58526 * 174.87802 * 4 2 1 35 35 H 1.09002 * 109.47628 * 300.00335 * 8 6 5 36 36 H 1.09003 * 109.47142 * 60.00485 * 8 6 5 37 37 H 1.08999 * 110.79198 * 241.77807 * 12 10 9 38 38 H 1.09001 * 110.41174 * 118.81434 * 12 10 9 39 39 H 1.08994 * 110.60900 * 241.25577 * 13 12 10 40 40 H 1.09003 * 110.60145 * 118.29462 * 13 12 10 41 41 H 1.09002 * 109.58861 * 293.68122 * 16 5 4 42 42 H 1.08996 * 109.58519 * 173.40013 * 16 5 4 43 43 H 1.09003 * 109.49975 * 65.24379 * 17 16 5 44 44 H 1.09000 * 109.49553 * 185.30642 * 17 16 5 45 45 H 1.09003 * 109.47169 * 184.99579 * 20 18 17 46 46 H 1.09001 * 109.47280 * 304.99784 * 20 18 17 47 47 H 0.97002 * 119.99289 * 359.97438 * 21 20 18 48 48 H 0.96995 * 119.99805 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2494 5 7 1.6526 -2.1412 -1.1712 6 6 0.9758 -2.7278 -2.1782 7 8 0.6823 -2.0875 -3.1655 8 6 0.5837 -4.1794 -2.0775 9 7 -0.1363 -4.5761 -3.2902 10 6 -1.4667 -4.4811 -3.4066 11 8 -2.2187 -4.0684 -2.5502 12 6 -1.8823 -4.9674 -4.7779 13 6 -0.5484 -5.3734 -5.4371 14 6 0.4813 -5.0686 -4.3711 15 8 1.6762 -5.2423 -4.4789 16 6 2.0153 -2.9038 0.0312 17 6 1.5037 -2.1557 1.2662 18 6 2.0408 -0.7228 1.2485 19 1 3.1305 -0.7436 1.2358 20 6 1.5597 0.0173 2.4982 21 7 2.1468 -0.6021 3.6890 22 6 1.8573 -0.1062 4.9321 23 1 1.1964 0.7419 5.0347 24 6 2.4132 -0.6934 6.0604 25 7 3.2190 -1.7266 5.9353 26 14 2.0187 -0.0164 7.7562 27 1 0.8171 -0.7023 8.2957 28 1 3.1712 -0.2504 8.6629 29 1 1.7542 1.4415 7.6579 30 1 -0.3634 0.5128 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6015 -0.2733 -2.1388 34 1 3.1281 -0.6457 -1.2976 35 1 1.4795 -4.7912 -1.9708 36 1 -0.0596 -4.3227 -1.2094 37 1 -2.3618 -4.1681 -5.3430 38 1 -2.5451 -5.8284 -4.6912 39 1 -0.3643 -4.7763 -6.3301 40 1 -0.5477 -6.4364 -5.6783 41 1 3.0993 -3.0036 0.0875 42 1 1.5592 -3.8928 -0.0120 43 1 0.4139 -2.1358 1.2540 44 1 1.8482 -2.6628 2.1674 45 1 1.8672 1.0616 2.4429 46 1 0.4728 -0.0388 2.5579 47 1 2.7401 -1.3640 3.5968 48 1 3.6071 -2.1371 6.7237 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185643395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:02 Heat of formation + Delta-G solvation = -110.352436 kcal Electronic energy + Delta-G solvation = -30195.605774 eV Core-core repulsion = 26057.055321 eV Total energy + Delta-G solvation = -4138.550453 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.01644 -41.39156 -39.68476 -39.30634 -36.94879 -36.59392 -35.05489 -34.35681 -33.22544 -31.99392 -29.69633 -28.52610 -27.31731 -27.12484 -25.48061 -24.23498 -23.34632 -23.09858 -21.74199 -20.34244 -19.68053 -19.16574 -18.66793 -18.37258 -17.58747 -17.54247 -16.83872 -16.69784 -16.51074 -15.95522 -15.65755 -15.52561 -15.40739 -15.30388 -15.06895 -14.97355 -14.89386 -14.51178 -14.31263 -13.98684 -13.77296 -13.65570 -13.52365 -13.33933 -12.98913 -12.83172 -12.74169 -12.51087 -12.21263 -12.11148 -12.07556 -11.92199 -11.79021 -11.67375 -11.60079 -11.35964 -11.26936 -11.13814 -10.90675 -10.64149 -9.74923 -8.96908 -7.94967 -5.22348 0.48582 1.22617 1.36119 1.47105 1.48020 1.56421 1.67057 2.01674 2.55927 3.19273 3.23906 3.27562 3.38563 3.62998 3.67664 3.70340 3.77665 3.91860 3.99387 4.02411 4.15959 4.18448 4.20455 4.30265 4.37225 4.43602 4.60942 4.66540 4.70773 4.75774 4.76591 4.81209 4.90423 4.91976 4.94137 5.03863 5.13888 5.15456 5.18862 5.26995 5.45346 5.51168 5.57223 5.73204 6.20438 6.27483 6.28290 6.67030 6.90917 7.35053 8.11390 8.35761 9.28375 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.021280 B = 0.002376 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.458224 B =11779.520616 C =11947.059184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 H 0.093 0.907 4 C 0.121 3.879 5 N -0.598 5.598 6 C 0.502 3.498 7 O -0.575 6.575 8 C 0.073 3.927 9 N -0.567 5.567 10 C 0.520 3.480 11 O -0.523 6.523 12 C -0.140 4.140 13 C -0.139 4.139 14 C 0.522 3.478 15 O -0.522 6.522 16 C 0.107 3.893 17 C -0.122 4.122 18 C -0.078 4.078 19 H 0.071 0.929 20 C 0.159 3.841 21 N -0.741 5.741 22 C -0.244 4.244 23 H 0.070 0.930 24 C -0.073 4.073 25 N -0.966 5.966 26 Si 0.969 3.031 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.045 0.955 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.155 0.845 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.015 0.985 46 H 0.018 0.982 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 -9.292 -26.012 28.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.001 4.001 5 N -0.330 5.330 6 C 0.290 3.710 7 O -0.455 6.455 8 C -0.052 4.052 9 N -0.309 5.309 10 C 0.312 3.688 11 O -0.397 6.397 12 C -0.179 4.179 13 C -0.178 4.178 14 C 0.314 3.686 15 O -0.396 6.396 16 C -0.015 4.015 17 C -0.160 4.160 18 C -0.097 4.097 19 H 0.090 0.910 20 C 0.033 3.967 21 N -0.384 5.384 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.265 4.265 25 N -0.617 5.617 26 Si 0.799 3.201 27 H -0.215 1.215 28 H -0.221 1.221 29 H -0.197 1.197 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.173 0.827 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.033 0.967 46 H 0.036 0.964 47 H 0.209 0.791 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.220 -8.696 -26.001 28.622 hybrid contribution 0.369 0.418 1.740 1.827 sum -7.851 -8.278 -24.261 26.810 Atomic orbital electron populations 1.21785 0.95148 1.01291 1.01348 1.21403 0.96239 0.99939 0.93280 0.88873 1.21728 1.00249 0.79817 0.98345 1.48178 1.54922 1.11986 1.17962 1.21054 0.77261 0.90081 0.82615 1.90653 1.56331 1.66160 1.32360 1.21719 1.01064 0.93076 0.89343 1.46651 1.10461 1.57322 1.16490 1.21841 0.80419 0.74847 0.91683 1.90780 1.56556 1.44493 1.47899 1.22600 0.99381 1.06511 0.89375 1.22595 0.89715 1.08258 0.97205 1.21795 0.89484 0.73407 0.83876 1.90763 1.16523 1.51702 1.80605 1.21981 1.01849 0.95169 0.82455 1.21856 1.00974 0.95588 0.97611 1.21179 1.00139 0.95007 0.93374 0.91041 1.20832 0.95405 0.94710 0.85798 1.42546 1.56777 1.37606 1.01506 1.19591 1.22204 1.10563 0.85272 0.91157 1.25491 1.00601 0.99116 1.01311 1.69789 1.36961 1.25851 1.29122 0.85201 0.76721 0.78071 0.80141 1.21466 1.22086 1.19746 0.92620 0.92838 0.93624 0.89968 0.89881 0.84305 0.84956 0.84290 0.82821 0.84231 0.82693 0.89315 0.87751 0.91950 0.91250 0.96719 0.96395 0.79100 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 8.39 71.98 0.60 -3.12 16 2 C -0.09 -2.26 2.72 -10.72 -0.03 -2.29 16 3 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.12 2.90 5.84 86.31 0.50 3.40 16 5 N -0.60 -14.34 2.43 -818.20 -1.99 -16.33 16 6 C 0.50 13.24 7.77 87.66 0.68 13.92 16 7 O -0.57 -18.84 15.86 -3.03 -0.05 -18.89 16 8 C 0.07 1.49 4.38 85.63 0.38 1.86 16 9 N -0.57 -10.91 2.04 -760.71 -1.55 -12.47 16 10 C 0.52 9.44 8.08 87.99 0.71 10.15 16 11 O -0.52 -13.92 17.47 -2.84 -0.05 -13.97 16 12 C -0.14 -0.77 7.03 30.46 0.21 -0.55 16 13 C -0.14 -0.70 7.03 30.46 0.21 -0.48 16 14 C 0.52 9.03 8.08 87.99 0.71 9.74 16 15 O -0.52 -12.94 17.48 -2.86 -0.05 -12.99 16 16 C 0.11 2.29 6.33 86.36 0.55 2.83 16 17 C -0.12 -3.42 4.91 30.67 0.15 -3.27 16 18 C -0.08 -2.34 1.96 -10.77 -0.02 -2.37 16 19 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 20 C 0.16 6.22 5.18 86.38 0.45 6.67 16 21 N -0.74 -36.88 5.32 -343.43 -1.83 -38.70 16 22 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 23 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 24 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 25 N -0.97 -58.25 13.06 21.65 0.28 -57.96 16 26 Si 0.97 46.11 29.55 68.60 2.03 48.14 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 28 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 29 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 30 H 0.05 1.56 6.58 -2.39 -0.02 1.55 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.31 5.98 -2.39 -0.01 1.29 16 33 H 0.08 2.15 7.02 -2.39 -0.02 2.13 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.14 2.32 7.63 -2.39 -0.02 2.30 16 36 H 0.13 2.44 7.38 -2.39 -0.02 2.43 16 37 H 0.14 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.16 -0.18 8.14 -2.39 -0.02 -0.19 16 41 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.10 1.71 5.93 -2.39 -0.01 1.70 16 43 H 0.06 1.83 6.34 -2.39 -0.02 1.82 16 44 H 0.07 2.27 7.15 -2.39 -0.02 2.25 16 45 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.02 0.73 6.74 -2.39 -0.02 0.71 16 47 H 0.38 19.53 6.85 -92.71 -0.63 18.89 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -81.48 382.86 3.56 -77.92 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 0.35 Total: 25.25 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 6.41 Total: 20.01 kcal Atomic # 7 Polarization: -120.37 SS G_CDS: -5.08 Total: -125.46 kcal Atomic # 8 Polarization: -45.71 SS G_CDS: -0.15 Total: -45.86 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -81.48 3.56 -77.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185643395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.432 kcal (2) G-P(sol) polarization free energy of solvation -81.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds