Wall clock time and date at job start Tue Mar 31 2020 21:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.45585 * 2 1 4 4 C 1.52899 * 109.32983 * 240.27001 * 2 1 3 5 5 C 1.51190 * 108.67960 * 159.98036 * 4 2 1 6 6 O 1.21283 * 119.76941 * 251.15286 * 5 4 2 7 7 N 1.33634 * 120.46025 * 71.16993 * 5 4 2 8 8 C 1.46918 * 120.62364 * 0.29134 * 7 5 4 9 9 C 1.53219 * 108.82073 * 288.01924 * 8 7 5 10 10 N 1.46074 * 109.72607 * 81.59754 * 9 8 7 11 11 C 1.34775 * 118.73180 * 116.15925 * 10 9 8 12 12 O 1.21348 * 120.00259 * 189.46170 * 11 10 9 13 13 C 1.49453 * 119.99979 * 9.46922 * 11 10 9 14 14 O 1.21357 * 120.00122 * 7.65508 * 13 11 10 15 15 N 1.34774 * 120.00034 * 187.66064 * 13 11 10 16 16 C 1.46926 * 120.63007 * 353.27487 * 15 13 11 17 17 C 1.53194 * 108.77459 * 233.62917 * 16 15 13 18 18 C 1.53046 * 109.31473 * 305.36434 * 17 16 15 19 19 C 1.53040 * 109.53507 * 61.36168 * 18 17 16 20 20 H 1.08999 * 109.52569 * 58.60938 * 19 18 17 21 21 C 1.50702 * 109.49467 * 178.68642 * 19 18 17 22 22 H 1.07998 * 120.00207 * 359.56571 * 21 19 18 23 23 C 1.37884 * 119.99985 * 179.83893 * 21 19 18 24 24 N 1.31519 * 119.99854 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 120.00101 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.46842 * 59.99961 * 25 23 21 27 27 H 1.48492 * 109.47155 * 180.02562 * 25 23 21 28 28 H 1.48507 * 109.46959 * 300.00280 * 25 23 21 29 29 C 1.46928 * 120.63033 * 173.29371 * 15 13 11 30 30 H 1.09003 * 109.46880 * 294.10652 * 1 2 3 31 31 H 1.09008 * 109.46644 * 54.10048 * 1 2 3 32 32 H 1.08995 * 109.47550 * 174.09966 * 1 2 3 33 33 H 1.09009 * 109.66992 * 40.16741 * 4 2 1 34 34 H 1.09000 * 109.63696 * 279.77460 * 4 2 1 35 35 H 0.97000 * 119.68773 * 180.26408 * 7 5 4 36 36 H 1.09001 * 109.57841 * 168.22058 * 8 7 5 37 37 H 1.08997 * 109.68970 * 47.88100 * 8 7 5 38 38 H 1.09003 * 109.43239 * 321.52002 * 9 8 7 39 39 H 1.09000 * 109.38643 * 201.65350 * 9 8 7 40 40 H 1.08998 * 109.58867 * 353.41483 * 16 15 13 41 41 H 1.08996 * 109.59057 * 113.84507 * 16 15 13 42 42 H 1.09003 * 109.49636 * 65.31079 * 17 16 15 43 43 H 1.08995 * 109.49818 * 185.40860 * 17 16 15 44 44 H 1.09004 * 109.45520 * 301.34709 * 18 17 16 45 45 H 1.08994 * 109.45924 * 181.38017 * 18 17 16 46 46 H 0.96996 * 120.00019 * 180.02562 * 24 23 21 47 47 H 1.08994 * 109.58730 * 6.58230 * 29 15 13 48 48 H 1.09005 * 109.70137 * 246.22402 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0361 -0.7155 -1.2529 5 6 3.4663 -0.2954 -1.5060 6 8 3.7241 0.4289 -2.4440 7 7 4.4483 -0.7169 -0.7036 8 6 4.1581 -1.6001 0.4340 9 6 3.4378 -0.7904 1.5172 10 7 2.0170 -0.6886 1.1937 11 6 1.1209 -1.2561 2.0251 12 8 -0.0447 -1.3372 1.6972 13 6 1.5626 -1.7856 3.3510 14 8 2.6943 -1.5823 3.7392 15 7 0.7041 -2.4890 4.1157 16 6 -0.7077 -2.6191 3.7304 17 6 -1.5828 -2.1726 4.9059 18 6 -1.1964 -2.9678 6.1552 19 6 0.2662 -2.6877 6.5080 20 1 0.4021 -1.6195 6.6773 21 6 0.6365 -3.4459 7.7567 22 1 -0.0997 -4.0601 8.2537 23 6 1.9135 -3.3508 8.2678 24 7 2.8084 -2.5981 7.6658 25 14 2.3723 -4.2900 9.8160 26 1 2.1853 -5.7451 9.5858 27 1 3.7924 -4.0205 10.1559 28 1 1.5034 -3.8505 10.9373 29 6 1.1623 -3.1400 5.3507 30 1 -0.3633 0.4198 0.9381 31 1 -0.3633 0.6026 -0.8325 32 1 -0.3634 -1.0221 -0.1056 33 1 1.4174 -0.4410 -2.1074 34 1 1.9929 -1.7941 -1.1014 35 1 5.3613 -0.4374 -0.8741 36 1 5.0904 -1.9979 0.8347 37 1 3.5206 -2.4218 0.1077 38 1 3.8700 0.2088 1.5707 39 1 3.5557 -1.2884 2.4796 40 1 -0.9098 -1.9887 2.8644 41 1 -0.9258 -3.6589 3.4869 42 1 -1.4299 -1.1092 5.0899 43 1 -2.6310 -2.3544 4.6687 44 1 -1.3258 -4.0327 5.9622 45 1 -1.8341 -2.6694 6.9872 46 1 3.7069 -2.5315 8.0251 47 1 2.1940 -2.8533 5.5537 48 1 1.0986 -4.2226 5.2408 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328181237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:52 Heat of formation + Delta-G solvation = -44.021136 kcal Electronic energy + Delta-G solvation = -31304.607453 eV Core-core repulsion = 27168.933341 eV Total energy + Delta-G solvation = -4135.674112 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49663 -39.98315 -38.70108 -37.46178 -36.49116 -34.95922 -33.38992 -32.89618 -31.86027 -29.83885 -28.80686 -28.28202 -26.00301 -25.09681 -23.67288 -23.54958 -21.98699 -21.54312 -20.24749 -19.66067 -18.70933 -17.56490 -17.25299 -16.90180 -16.40544 -16.30418 -15.92146 -15.61513 -15.34815 -15.03127 -14.60534 -14.30007 -13.99603 -13.79946 -13.64301 -13.32861 -13.16680 -12.98354 -12.76748 -12.65360 -12.55747 -12.37895 -12.24344 -11.98565 -11.87188 -11.78260 -11.44364 -11.05414 -10.95330 -10.61095 -10.46455 -10.32044 -10.06802 -9.99952 -9.80952 -9.47391 -9.19225 -9.16900 -8.83101 -8.52459 -8.15204 -7.96296 -6.08111 -4.16464 1.57520 2.36777 2.41833 3.05538 3.26799 3.32905 3.34508 3.40196 3.63363 4.18334 4.35419 4.41406 4.61483 4.71008 4.83590 4.87475 4.94553 5.05563 5.22052 5.25794 5.42423 5.54192 5.59174 5.60275 5.70027 5.81584 5.93062 5.97463 6.04705 6.16933 6.30349 6.39321 6.48718 6.51427 6.54994 6.63717 6.79183 6.90721 6.94648 6.98161 7.03025 7.15663 7.50434 7.72874 7.81685 7.88831 7.97557 8.04226 8.26685 8.43009 8.87142 9.49308 10.97130 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.018406 B = 0.003240 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.881445 B = 8638.684591 C = 9912.038549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 H 0.080 0.920 4 C -0.152 4.152 5 C 0.517 3.483 6 O -0.554 6.554 7 N -0.725 5.725 8 C 0.092 3.908 9 C 0.018 3.982 10 N -0.580 5.580 11 C 0.510 3.490 12 O -0.502 6.502 13 C 0.492 3.508 14 O -0.510 6.510 15 N -0.558 5.558 16 C 0.048 3.952 17 C -0.130 4.130 18 C -0.114 4.114 19 C 0.042 3.958 20 H 0.030 0.970 21 C -0.521 4.521 22 H 0.059 0.941 23 C 0.063 3.937 24 N -0.882 5.882 25 Si 0.893 3.107 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.105 3.895 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.400 0.600 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.185 0.815 40 H 0.146 0.854 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.264 0.736 47 H 0.125 0.875 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.264 1.688 -14.992 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.043 3.957 3 H 0.098 0.902 4 C -0.193 4.193 5 C 0.304 3.696 6 O -0.432 6.432 7 N -0.377 5.377 8 C -0.033 4.033 9 C -0.104 4.104 10 N -0.313 5.313 11 C 0.295 3.705 12 O -0.380 6.380 13 C 0.275 3.725 14 O -0.390 6.390 15 N -0.288 5.288 16 C -0.073 4.073 17 C -0.168 4.168 18 C -0.152 4.152 19 C 0.023 3.977 20 H 0.048 0.952 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.140 4.140 24 N -0.519 5.519 25 Si 0.721 3.279 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.203 1.203 29 C -0.015 4.015 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.113 0.887 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.199 0.801 40 H 0.162 0.838 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.143 0.857 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.171 2.113 -15.383 15.572 hybrid contribution 0.798 -0.446 0.850 1.249 sum -0.373 1.667 -14.533 14.633 Atomic orbital electron populations 1.22376 0.91132 1.04205 1.01805 1.21061 0.96913 0.95304 0.82398 0.90203 1.22442 0.93250 1.03032 1.00590 1.20581 0.88139 0.79562 0.81340 1.90750 1.84498 1.37443 1.30518 1.46081 1.10666 1.50718 1.30259 1.22305 1.02176 0.92755 0.86090 1.24052 0.78200 1.03504 1.04626 1.47804 1.07516 1.53219 1.22744 1.20742 0.85698 0.78218 0.85882 1.90410 1.17906 1.55529 1.74108 1.19943 0.86102 0.80826 0.85669 1.90214 1.19121 1.58471 1.71239 1.48526 1.09398 1.47042 1.23812 1.23187 0.79617 1.03325 1.01192 1.21905 0.98129 1.00549 0.96257 1.21673 0.99596 0.98530 0.95369 1.18947 0.88750 0.97547 0.92484 0.95205 1.21058 0.96630 1.29174 1.09053 0.92324 1.25048 0.96635 0.95131 0.97159 1.69857 1.04365 1.38091 1.39619 0.86635 0.77444 0.80317 0.83490 1.20230 1.21227 1.20275 1.22554 1.04531 0.94498 0.79925 0.90856 0.93549 0.89456 0.87126 0.88666 0.76365 0.87884 0.90373 0.90713 0.80057 0.83771 0.92401 0.92403 0.92115 0.93200 0.93055 0.92568 0.85672 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 7.44 37.16 0.28 -1.15 16 2 C 0.15 1.54 3.19 -68.17 -0.22 1.32 16 3 H 0.08 0.86 7.95 -51.93 -0.41 0.45 16 4 C -0.15 -1.45 4.97 -27.69 -0.14 -1.59 16 5 C 0.52 5.91 7.11 -11.25 -0.08 5.83 16 6 O -0.55 -8.42 17.91 5.55 0.10 -8.32 16 7 N -0.72 -6.59 5.30 -59.99 -0.32 -6.91 16 8 C 0.09 0.77 6.48 -3.70 -0.02 0.74 16 9 C 0.02 0.19 5.93 -4.16 -0.02 0.17 16 10 N -0.58 -6.89 2.78 -167.13 -0.46 -7.35 16 11 C 0.51 7.25 7.36 -11.58 -0.09 7.17 16 12 O -0.50 -7.06 8.19 5.50 0.05 -7.02 16 13 C 0.49 8.63 7.59 -11.59 -0.09 8.54 16 14 O -0.51 -9.85 12.47 5.49 0.07 -9.78 16 15 N -0.56 -10.41 2.97 -173.27 -0.51 -10.92 16 16 C 0.05 0.77 6.20 -3.71 -0.02 0.75 16 17 C -0.13 -2.13 6.08 -26.61 -0.16 -2.30 16 18 C -0.11 -2.22 5.11 -26.69 -0.14 -2.35 16 19 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 20 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 21 C -0.52 -13.51 8.56 -34.44 -0.29 -13.80 16 22 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 23 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 24 N -0.88 -24.17 11.39 55.43 0.63 -23.54 16 25 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 C 0.10 2.33 5.41 -3.71 -0.02 2.31 16 30 H 0.07 0.88 6.73 -51.93 -0.35 0.53 16 31 H 0.05 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.09 0.96 6.49 -51.93 -0.34 0.63 16 33 H 0.11 0.97 7.98 -51.92 -0.41 0.56 16 34 H 0.09 0.84 7.09 -51.93 -0.37 0.48 16 35 H 0.40 3.18 8.91 -40.82 -0.36 2.82 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 0.65 7.04 -51.93 -0.37 0.29 16 38 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 39 H 0.18 2.48 3.64 -57.52 -0.21 2.27 16 40 H 0.15 2.19 3.86 -56.74 -0.22 1.97 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.13 3.19 5.11 -51.93 -0.27 2.93 16 48 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -29.65 363.09 -8.39 -38.04 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -7.07 Total: 6.99 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -1.32 Total: 7.97 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: -0.67 Total: -48.72 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: 0.21 Total: -25.12 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.65 -8.39 -38.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328181237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.980 kcal (2) G-P(sol) polarization free energy of solvation -29.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds