Wall clock time and date at job start Tue Mar 31 2020 20:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17411 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47149 * 20.25037 * 3 2 1 5 5 C 1.42901 * 113.99665 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.46808 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.46979 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00115 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99966 * 179.97438 * 7 6 5 10 10 C 1.47431 * 125.64961 * 359.97438 * 9 7 6 11 11 C 1.54902 * 104.83106 * 204.16379 * 10 9 7 12 12 H 1.09001 * 111.00834 * 81.10190 * 11 10 9 13 13 N 1.46901 * 111.00301 * 204.91544 * 11 10 9 14 14 C 1.46902 * 110.99844 * 270.41718 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00057 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46646 * 60.00463 * 22 20 18 24 24 H 1.48504 * 109.47036 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47259 * 300.00225 * 22 20 18 26 26 C 1.55159 * 101.62014 * 323.00706 * 11 10 9 27 27 C 1.47018 * 125.64835 * 180.02562 * 9 7 6 28 28 H 1.09004 * 109.88235 * 298.47608 * 27 9 7 29 29 C 1.52995 * 109.88502 * 59.48922 * 27 9 7 30 30 H 4.38442 * 5.44408 * 180.02562 * 4 1 2 31 31 H 1.09001 * 109.46639 * 260.24752 * 3 2 1 32 32 H 1.08999 * 109.46918 * 140.25155 * 3 2 1 33 33 H 1.08995 * 109.47027 * 60.00249 * 5 4 3 34 34 H 1.08998 * 109.47430 * 300.00379 * 5 4 3 35 35 H 1.09001 * 109.46777 * 60.00111 * 6 5 4 36 36 H 1.08998 * 109.47379 * 300.00341 * 6 5 4 37 37 H 1.08996 * 110.36546 * 85.32214 * 10 9 7 38 38 H 1.09005 * 110.36357 * 323.00160 * 10 9 7 39 39 H 1.00895 * 111.00207 * 34.37061 * 13 11 10 40 40 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 41 41 H 1.09000 * 109.47732 * 300.00127 * 14 13 11 42 42 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 43 43 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 44 44 H 1.08999 * 110.71904 * 153.84997 * 26 11 10 45 45 H 1.09002 * 110.71790 * 277.12184 * 26 11 10 46 46 H 1.09004 * 109.47215 * 58.54197 * 29 27 9 47 47 H 1.08994 * 109.47678 * 178.54573 * 29 27 9 48 48 H 1.09002 * 109.46985 * 298.54715 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1230 -1.2631 -0.4663 5 6 4.5476 -1.3681 -0.5059 6 6 4.9427 -2.7546 -1.0181 7 6 6.4451 -2.8655 -1.0593 8 8 7.1321 -1.9278 -0.7135 9 7 7.0252 -4.0068 -1.4804 10 6 6.3138 -5.2185 -1.9267 11 6 7.3194 -6.3748 -1.7002 12 1 7.3188 -6.6948 -0.6583 13 7 7.0333 -7.5041 -2.5951 14 6 6.0901 -8.4429 -1.9730 15 6 5.8209 -9.5851 -2.9185 16 8 6.3620 -9.6145 -4.0037 17 7 4.9837 -10.5770 -2.5559 18 6 4.7431 -11.6191 -3.4138 19 1 5.2249 -11.6452 -4.3800 20 6 3.8796 -12.6414 -3.0402 21 7 3.2930 -12.6094 -1.8647 22 14 3.5513 -14.0608 -4.2095 23 1 4.8266 -14.7600 -4.5093 24 1 2.6011 -15.0120 -3.5788 25 1 2.9649 -13.5385 -5.4698 26 6 8.6643 -5.6968 -2.0729 27 6 8.4724 -4.2500 -1.5697 28 1 8.9237 -3.5480 -2.2710 29 6 9.1131 -4.0908 -0.1895 30 1 -1.0497 -0.0003 -0.0003 31 1 3.0093 0.1749 1.0128 32 1 3.0090 0.7909 -0.6571 33 1 4.9506 -1.2221 0.4962 34 1 4.9497 -0.6062 -1.1737 35 1 4.5397 -2.9001 -2.0204 36 1 4.5406 -3.5167 -0.3507 37 1 6.0572 -5.1402 -2.9831 38 1 5.4162 -5.3735 -1.3279 39 1 6.6872 -7.1809 -3.4860 40 1 5.1559 -7.9265 -1.7522 41 1 6.5187 -8.8295 -1.0483 42 1 4.5511 -10.5537 -1.6880 43 1 2.6898 -13.3229 -1.6040 44 1 9.4949 -6.1782 -1.5569 45 1 8.8181 -5.7125 -3.1520 46 1 8.6518 -4.7900 0.5080 47 1 10.1810 -4.2977 -0.2585 48 1 8.9627 -3.0712 0.1654 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755678122.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:21 Heat of formation + Delta-G solvation = -57.223656 kcal Electronic energy + Delta-G solvation = -28212.557465 eV Core-core repulsion = 24076.310849 eV Total energy + Delta-G solvation = -4136.246617 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.62702 -38.80464 -38.32573 -37.73419 -34.88667 -33.88104 -33.82993 -32.71744 -31.28435 -31.09768 -29.96945 -27.39191 -26.38390 -25.97818 -24.50620 -23.90974 -22.12936 -20.77110 -19.37698 -19.28629 -18.72811 -17.95743 -17.73339 -16.89361 -16.67253 -16.27832 -16.00581 -15.65536 -15.40235 -14.98207 -14.91272 -14.52921 -14.15229 -13.84023 -13.75985 -13.68118 -13.27857 -13.19496 -13.01866 -12.97299 -12.47064 -12.40411 -12.11961 -12.01879 -11.90700 -11.73683 -11.55809 -11.43687 -11.10466 -11.04120 -10.93107 -10.84754 -10.78619 -10.46585 -10.24477 -10.07541 -9.96932 -9.53571 -8.95788 -8.54320 -8.17993 -8.00206 -6.44984 -3.86081 2.03801 2.34185 2.41439 2.63400 3.17994 3.24224 3.28341 3.49265 3.85096 3.93993 4.10577 4.20446 4.29131 4.41554 4.51522 4.62816 4.76910 4.81829 4.86891 4.90242 4.96201 5.04213 5.09046 5.11152 5.18171 5.21423 5.34256 5.40269 5.43447 5.44689 5.52489 5.55943 5.69023 5.74827 5.84769 5.89795 5.92105 6.06342 6.19062 6.22621 6.67948 7.06701 7.17273 7.22011 7.49807 7.52026 7.86267 8.02069 8.56866 9.14156 9.49927 10.00890 10.72522 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.002162 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.982373 B =12947.602941 C =15621.022724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.196 4.196 3 C 0.175 3.825 4 O -0.385 6.385 5 C 0.079 3.921 6 C -0.138 4.138 7 C 0.536 3.464 8 O -0.543 6.543 9 N -0.609 5.609 10 C 0.064 3.936 11 C 0.079 3.921 12 H 0.095 0.905 13 N -0.652 5.652 14 C 0.048 3.952 15 C 0.439 3.561 16 O -0.584 6.584 17 N -0.562 5.562 18 C -0.301 4.301 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.117 4.117 27 C 0.134 3.866 28 H 0.076 0.924 29 C -0.163 4.163 30 H 0.222 0.778 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.353 0.647 40 H 0.046 0.954 41 H 0.088 0.912 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.065 0.935 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 22.851 6.581 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.196 4.196 3 C 0.100 3.900 4 O -0.305 6.305 5 C 0.003 3.997 6 C -0.178 4.178 7 C 0.325 3.675 8 O -0.421 6.421 9 N -0.343 5.343 10 C -0.061 4.061 11 C -0.033 4.033 12 H 0.113 0.887 13 N -0.283 5.283 14 C -0.084 4.084 15 C 0.224 3.776 16 O -0.468 6.468 17 N -0.198 5.198 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.155 4.155 27 C 0.031 3.969 28 H 0.094 0.906 29 C -0.221 4.221 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.174 0.826 40 H 0.064 0.936 41 H 0.106 0.894 42 H 0.226 0.774 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.875 22.725 6.267 23.748 hybrid contribution -1.505 -0.173 0.030 1.515 sum 1.371 22.552 6.297 23.455 Atomic orbital electron populations 1.25010 0.95927 0.97707 1.00269 1.22542 0.93905 1.02159 1.00989 1.19039 0.84688 0.86631 0.99691 1.87889 1.21579 1.33786 1.87258 1.22143 0.79896 0.96397 1.01286 1.21463 0.92352 0.98936 1.05038 1.19988 0.89805 0.81094 0.76626 1.90695 1.65352 1.37390 1.48652 1.48465 1.07621 1.13413 1.64845 1.23344 0.97140 0.85189 1.00466 1.22799 0.93718 0.88538 0.98212 0.88731 1.60129 1.48477 1.14151 1.05578 1.21753 0.94476 0.93966 0.98208 1.19763 0.84026 0.85069 0.88720 1.90532 1.53307 1.79094 1.23860 1.41856 1.39963 1.19754 1.18258 1.19652 1.24854 0.98689 0.99818 0.87938 1.25268 0.96505 0.99204 0.96917 1.69599 1.30217 1.34594 1.19828 0.85913 0.78319 0.80197 0.79772 1.19853 1.20969 1.19893 1.22751 0.98053 0.92123 1.02617 1.21648 0.80269 0.97172 0.97821 0.90574 1.22150 1.00507 1.03151 0.96272 0.76097 0.90639 0.90653 0.91992 0.92015 0.87880 0.87862 0.90672 0.90289 0.82608 0.93646 0.89388 0.77441 0.91769 0.89288 0.89792 0.92447 0.91557 0.91253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 19.25 29.55 0.57 -0.79 16 2 C -0.20 -1.83 13.73 -37.12 -0.51 -2.33 16 3 C 0.18 1.40 6.41 34.37 0.22 1.62 16 4 O -0.39 -3.88 10.30 -35.23 -0.36 -4.24 16 5 C 0.08 0.71 5.23 37.16 0.19 0.90 16 6 C -0.14 -1.21 5.08 -27.88 -0.14 -1.35 16 7 C 0.54 5.82 7.63 -10.99 -0.08 5.73 16 8 O -0.54 -7.35 14.88 5.56 0.08 -7.26 16 9 N -0.61 -6.10 3.08 -162.99 -0.50 -6.60 16 10 C 0.06 0.59 6.30 -2.53 -0.02 0.58 16 11 C 0.08 0.83 3.34 -65.57 -0.22 0.61 16 12 H 0.09 0.97 7.87 -51.93 -0.41 0.56 16 13 N -0.65 -9.18 6.02 -105.72 -0.64 -9.82 16 14 C 0.05 0.77 6.05 -4.97 -0.03 0.74 16 15 C 0.44 9.85 7.82 -10.98 -0.09 9.76 16 16 O -0.58 -15.23 15.78 5.55 0.09 -15.15 16 17 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 18 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 19 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 22 Si 0.93 20.73 29.55 -169.99 -5.02 15.70 16 23 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.12 -1.11 6.19 -24.87 -0.15 -1.26 16 27 C 0.13 1.29 3.50 -66.93 -0.23 1.06 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 C -0.16 -1.52 9.06 37.16 0.34 -1.18 16 30 H 0.22 0.93 7.80 -54.11 -0.42 0.51 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 34 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.83 7.84 -51.93 -0.41 0.42 16 37 H 0.08 0.69 7.77 -51.93 -0.40 0.29 16 38 H 0.08 0.67 7.47 -51.93 -0.39 0.28 16 39 H 0.35 5.13 7.94 -39.29 -0.31 4.82 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 42 H 0.39 9.16 7.90 -40.82 -0.32 8.84 16 43 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 44 H 0.09 0.80 7.83 -51.93 -0.41 0.40 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.07 0.77 6.74 -51.93 -0.35 0.42 16 LS Contribution 408.09 15.07 6.15 6.15 Total: -1.00 -33.30 408.09 -7.51 -40.80 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -7.57 Total: 11.35 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.39 Total: 6.24 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.47 Total: -53.60 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.19 Total: -26.65 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.30 -7.51 -40.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755678122.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.419 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds