Wall clock time and date at job start Tue Mar 31 2020 21:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47046 * 2 1 4 4 C 1.52999 * 109.46598 * 240.00368 * 2 1 3 5 5 N 1.46507 * 109.46991 * 184.99649 * 4 2 1 6 6 C 1.34779 * 119.99956 * 179.97438 * 5 4 2 7 7 O 1.21585 * 119.99988 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99711 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00015 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.46733 * 325.00143 * 9 8 6 11 11 C 1.50694 * 109.47115 * 204.99781 * 9 8 6 12 12 H 1.08000 * 120.00563 * 359.97438 * 11 9 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 9 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 C 1.53000 * 109.47145 * 84.99707 * 9 8 6 20 20 F 1.39903 * 109.47440 * 180.02562 * 19 9 8 21 21 F 1.39899 * 109.47255 * 300.00046 * 19 9 8 22 22 F 1.39900 * 109.47102 * 59.99912 * 19 9 8 23 23 N 1.46896 * 109.46947 * 120.00750 * 2 1 3 24 24 C 1.46839 * 111.00470 * 59.20956 * 23 2 1 25 25 C 1.53034 * 109.52776 * 174.16046 * 24 23 2 26 26 C 1.53117 * 109.28147 * 59.17546 * 25 24 23 27 27 C 1.53119 * 109.15754 * 302.35031 * 26 25 24 28 28 C 1.46842 * 111.00148 * 294.99366 * 23 2 1 29 29 H 1.09002 * 109.47514 * 59.99625 * 1 2 3 30 30 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46968 * 299.99562 * 1 2 3 32 32 H 1.09005 * 109.47157 * 65.00329 * 4 2 1 33 33 H 1.08993 * 109.47850 * 304.99684 * 4 2 1 34 34 H 0.97001 * 119.99730 * 0.02562 * 5 4 2 35 35 H 0.97005 * 120.00104 * 359.97438 * 8 6 5 36 36 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 37 37 H 1.09006 * 109.46466 * 294.17699 * 24 23 2 38 38 H 1.09003 * 109.46765 * 54.14208 * 24 23 2 39 39 H 1.09004 * 109.50293 * 299.23528 * 25 24 23 40 40 H 1.08997 * 109.53881 * 179.13962 * 25 24 23 41 41 H 1.08994 * 109.52806 * 182.44415 * 26 25 24 42 42 H 1.08998 * 109.57563 * 62.28307 * 26 25 24 43 43 H 1.09000 * 109.50642 * 297.70678 * 27 26 25 44 44 H 1.09007 * 109.53517 * 177.61375 * 27 26 25 45 45 H 1.08999 * 109.46581 * 305.86422 * 28 23 2 46 46 H 1.09002 * 109.46337 * 65.83550 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1908 6 6 4.1728 -1.4291 -2.1910 7 8 3.5681 -1.8852 -3.1421 8 7 5.5160 -1.5262 -2.1368 9 6 6.2475 -2.1809 -3.2243 10 1 5.6542 -3.0075 -3.6151 11 6 7.5594 -2.7070 -2.7017 12 1 7.8223 -2.5674 -1.6636 13 6 8.4247 -3.3658 -3.5493 14 7 8.1048 -3.5355 -4.8137 15 14 10.0511 -4.0174 -2.9017 16 1 11.0966 -2.9731 -3.0489 17 1 9.9059 -4.3738 -1.4675 18 1 10.4439 -5.2234 -3.6741 19 6 6.5122 -1.1700 -4.3418 20 9 7.2103 -1.7953 -5.3806 21 9 5.2943 -0.6815 -4.8270 22 9 7.2736 -0.1089 -3.8402 23 7 2.0196 -0.6926 1.1993 24 6 1.5334 -2.0775 1.2427 25 6 2.1776 -2.8091 2.4224 26 6 1.8223 -2.0828 3.7227 27 6 2.2966 -0.6298 3.6324 28 6 1.6489 0.0386 2.4176 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7515 -0.1581 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 3.9823 -0.4627 -0.4318 35 1 5.9985 -1.1620 -1.3782 36 1 8.7137 -3.9986 -5.4100 37 1 0.4500 -2.0786 1.3625 38 1 1.7963 -2.5841 0.3139 39 1 3.2602 -2.8206 2.2962 40 1 1.8052 -3.8327 2.4638 41 1 2.3145 -2.5752 4.5612 42 1 0.7425 -2.1050 3.8701 43 1 3.3811 -0.6069 3.5252 44 1 2.0091 -0.0956 4.5380 45 1 1.9956 1.0693 2.3422 46 1 0.5650 0.0277 2.5321 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932920607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:11 Heat of formation + Delta-G solvation = -171.196424 kcal Electronic energy + Delta-G solvation = -31326.091637 eV Core-core repulsion = 26643.046050 eV Total energy + Delta-G solvation = -4683.045587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -48.24483 -45.89665 -45.51748 -39.95084 -38.89937 -35.77928 -34.48814 -33.20401 -32.39633 -31.03929 -30.09694 -28.32848 -25.98525 -24.51906 -24.37681 -23.21943 -21.55964 -20.85302 -19.99852 -19.37912 -18.11902 -16.84719 -16.71336 -16.63320 -16.47918 -16.04316 -15.34176 -15.04471 -14.78170 -14.71549 -14.42838 -14.38520 -14.17655 -13.49915 -13.38397 -13.23181 -12.84679 -12.78366 -12.72232 -12.39147 -12.32913 -12.29521 -12.20051 -12.16392 -11.88257 -11.74123 -11.72665 -11.46902 -11.09552 -10.95905 -10.89306 -10.83585 -10.70129 -10.53624 -10.39977 -10.33352 -9.57882 -9.41944 -8.67758 -8.60601 -8.44899 -8.02241 -6.17458 -4.40627 3.22533 3.26275 3.29727 3.35335 3.69700 3.94271 4.24503 4.54465 4.58661 4.66258 4.71244 4.74383 4.89448 4.99824 5.01712 5.07839 5.13069 5.16903 5.30108 5.37911 5.45219 5.50857 5.52383 5.65600 5.70005 5.79901 5.81069 5.86307 5.93759 5.96141 5.98082 6.03788 6.07921 6.21345 6.32058 6.85038 6.94336 6.96627 7.04143 7.34063 7.48655 7.69717 7.84381 8.57056 8.82168 9.23447 9.39032 10.74149 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.003255 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.047827 B = 8600.023682 C = 9789.625199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.068 3.932 3 H 0.089 0.911 4 C 0.151 3.849 5 N -0.742 5.742 6 C 0.698 3.302 7 O -0.591 6.591 8 N -0.727 5.727 9 C 0.263 3.737 10 H 0.084 0.916 11 C -0.549 4.549 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.840 5.840 15 Si 0.914 3.086 16 H -0.277 1.277 17 H -0.271 1.271 18 H -0.283 1.283 19 C 0.415 3.585 20 F -0.138 7.138 21 F -0.217 7.217 22 F -0.211 7.211 23 N -0.528 5.528 24 C 0.050 3.950 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.117 4.117 28 C 0.055 3.945 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.399 0.601 35 H 0.394 0.606 36 H 0.267 0.733 37 H 0.034 0.966 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 6.041 15.022 20.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.040 4.040 3 H 0.107 0.893 4 C 0.025 3.975 5 N -0.399 5.399 6 C 0.397 3.603 7 O -0.469 6.469 8 N -0.379 5.379 9 C 0.157 3.843 10 H 0.102 0.898 11 C -0.587 4.587 12 H 0.095 0.905 13 C -0.144 4.144 14 N -0.474 5.474 15 Si 0.741 3.259 16 H -0.203 1.203 17 H -0.195 1.195 18 H -0.209 1.209 19 C 0.359 3.641 20 F -0.120 7.120 21 F -0.199 7.199 22 F -0.193 7.193 23 N -0.252 5.252 24 C -0.077 4.077 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.155 4.155 28 C -0.073 4.073 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.227 0.773 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.091 0.909 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -12.453 5.511 13.869 19.437 hybrid contribution 0.417 0.320 0.754 0.919 sum -12.037 5.831 14.623 19.818 Atomic orbital electron populations 1.22376 0.96637 1.02682 1.02588 1.21992 0.93290 0.98705 0.90060 0.89263 1.21107 0.80339 1.00201 0.95843 1.44881 1.06650 1.64297 1.24054 1.16092 0.82287 0.79201 0.82692 1.90902 1.67945 1.53849 1.34186 1.45229 1.04338 1.62950 1.25419 1.19559 0.94208 0.88679 0.81896 0.89838 1.20887 1.01292 1.39073 0.97412 0.90538 1.25079 0.99244 0.95482 0.94611 1.70415 1.36672 1.36782 1.03499 0.86229 0.82288 0.78424 0.78963 1.20279 1.19520 1.20862 1.23204 0.72865 0.81603 0.86430 1.93397 1.78195 1.80006 1.60360 1.93069 1.46926 1.89837 1.90040 1.92979 1.77442 1.60847 1.88005 1.62083 1.59524 1.02191 1.01418 1.22167 0.96826 0.88981 0.99773 1.21576 1.02000 0.98206 0.93718 1.21571 1.00509 0.95886 0.97855 1.21582 1.01559 0.95593 0.96726 1.22086 0.97741 0.97627 0.89858 0.91534 0.91979 0.92175 0.91572 0.92025 0.76635 0.77294 0.92212 0.94814 0.89981 0.90833 0.91732 0.91997 0.92622 0.90936 0.91876 0.90899 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.50 37.16 0.32 -1.15 16 2 C 0.07 0.64 2.51 -67.72 -0.17 0.47 16 3 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 4 C 0.15 1.95 4.69 -4.04 -0.02 1.93 16 5 N -0.74 -11.22 5.39 -65.22 -0.35 -11.57 16 6 C 0.70 14.30 8.10 -86.92 -0.70 13.60 16 7 O -0.59 -14.56 14.92 5.29 0.08 -14.48 16 8 N -0.73 -15.31 4.99 -59.82 -0.30 -15.61 16 9 C 0.26 6.70 2.21 -69.09 -0.15 6.54 16 10 H 0.08 2.39 7.58 -51.93 -0.39 2.00 16 11 C -0.55 -14.21 8.47 -34.44 -0.29 -14.50 16 12 H 0.08 1.87 7.74 -52.49 -0.41 1.46 16 13 C 0.06 1.70 5.20 -17.82 -0.09 1.60 16 14 N -0.84 -23.36 9.50 55.43 0.53 -22.83 16 15 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.42 10.95 2.81 37.16 0.10 11.05 16 20 F -0.14 -3.92 12.91 2.25 0.03 -3.89 16 21 F -0.22 -5.71 15.68 2.25 0.04 -5.68 16 22 F -0.21 -5.33 16.94 2.25 0.04 -5.29 16 23 N -0.53 -4.95 4.08 -226.71 -0.93 -5.87 16 24 C 0.05 0.49 4.63 -3.84 -0.02 0.47 16 25 C -0.12 -1.08 6.09 -26.65 -0.16 -1.24 16 26 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 27 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 28 C 0.05 0.43 5.02 -3.84 -0.02 0.41 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 31 H 0.06 0.43 6.65 -51.93 -0.35 0.09 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 34 H 0.40 5.25 8.15 -40.82 -0.33 4.91 16 35 H 0.39 7.21 8.55 -40.82 -0.35 6.86 16 36 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.03 0.31 6.62 -51.93 -0.34 -0.03 16 38 H 0.08 0.97 6.14 -51.93 -0.32 0.65 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 46 H 0.03 0.26 6.73 -51.93 -0.35 -0.09 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -30.62 366.45 -8.77 -39.39 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -6.87 Total: 7.99 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: -1.53 Total: 17.04 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -1.05 Total: -55.88 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.08 Total: -14.48 kcal Atomic # 9 Polarization: -14.96 SS G_CDS: 0.10 Total: -14.86 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.62 -8.77 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932920607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.806 kcal (2) G-P(sol) polarization free energy of solvation -30.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds