Wall clock time and date at job start Tue Mar 31 2020 21:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47220 * 2 1 4 4 C 1.50705 * 109.47018 * 119.99868 * 2 1 3 5 5 O 1.21279 * 120.00067 * 120.00487 * 4 2 1 6 6 N 1.34775 * 119.99894 * 300.00109 * 4 2 1 7 7 C 1.46491 * 119.99906 * 180.02562 * 6 4 2 8 8 H 1.09004 * 109.37227 * 35.25344 * 7 6 4 9 9 C 1.50883 * 109.36914 * 155.00067 * 7 6 4 10 10 C 1.52567 * 109.35822 * 211.94974 * 9 7 6 11 11 C 1.47091 * 114.32574 * 274.98114 * 10 9 7 12 12 C 1.54864 * 110.32048 * 62.80715 * 11 10 9 13 13 N 1.44577 * 109.59997 * 288.73152 * 12 11 10 14 14 C 1.36935 * 118.64603 * 270.70802 * 13 12 11 15 15 H 1.08008 * 119.99845 * 27.24308 * 14 13 12 16 16 C 1.38806 * 120.00218 * 206.97284 * 14 13 12 17 17 N 1.31621 * 119.99954 * 17.02219 * 16 14 13 18 18 Si 1.86800 * 120.00044 * 197.02151 * 16 14 13 19 19 H 1.48498 * 109.47477 * 59.99875 * 18 16 14 20 20 H 1.48507 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47079 * 299.99640 * 18 16 14 22 22 C 1.47601 * 122.71289 * 90.98386 * 13 12 11 23 23 N 1.46502 * 109.47320 * 239.99797 * 2 1 3 24 24 C 1.33875 * 122.76151 * 299.70752 * 23 2 1 25 25 O 1.21219 * 125.39702 * 359.97438 * 24 23 2 26 26 C 1.51321 * 109.20329 * 179.83973 * 24 23 2 27 27 C 1.54220 * 103.55480 * 0.39253 * 26 24 23 28 28 C 1.33881 * 122.76182 * 120.00257 * 23 2 1 29 29 O 1.21221 * 125.39411 * 359.97171 * 28 23 2 30 30 H 1.09005 * 109.47349 * 60.00172 * 1 2 3 31 31 H 1.09003 * 109.47220 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47474 * 300.00142 * 1 2 3 33 33 H 0.96998 * 119.99822 * 359.97438 * 6 4 2 34 34 H 1.09002 * 109.49069 * 91.98434 * 9 7 6 35 35 H 1.08998 * 109.50700 * 331.92571 * 9 7 6 36 36 H 1.09007 * 108.51359 * 153.73164 * 10 9 7 37 37 H 1.08994 * 108.51549 * 36.24275 * 10 9 7 38 38 H 1.08993 * 109.33320 * 302.54386 * 11 10 9 39 39 H 1.09003 * 109.33215 * 183.06366 * 11 10 9 40 40 H 1.09003 * 109.45179 * 168.69487 * 12 11 10 41 41 H 1.08996 * 109.42981 * 48.75424 * 12 11 10 42 42 H 0.97003 * 119.99916 * 180.02562 * 17 16 14 43 43 H 1.08998 * 108.95194 * 78.30099 * 22 13 12 44 44 H 1.09003 * 108.94596 * 196.92867 * 22 13 12 45 45 H 1.08997 * 110.79806 * 241.77551 * 26 24 23 46 46 H 1.09004 * 110.54154 * 118.88327 * 26 24 23 47 47 H 1.08999 * 110.60445 * 241.25687 * 27 26 24 48 48 H 1.09002 * 110.73940 * 118.36098 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7066 -0.2499 2.4546 7 6 2.1954 -0.9401 3.6507 8 1 3.1965 -1.3273 3.4610 9 6 2.2449 0.0315 4.8040 10 6 3.3947 -0.3451 5.7335 11 6 3.0558 -1.3711 6.7315 12 6 2.6789 -2.6995 6.0305 13 7 1.3940 -2.5586 5.3829 14 6 0.2633 -2.8546 6.0962 15 1 0.2619 -2.7556 7.1718 16 6 -0.8829 -3.2766 5.4367 17 7 -0.8061 -3.7128 4.1973 18 14 -2.5343 -3.2254 6.3082 19 1 -2.8422 -1.8276 6.7039 20 1 -3.5922 -3.7261 5.3941 21 1 -2.4815 -4.0825 7.5197 22 6 1.2510 -2.1144 3.9825 23 7 2.0183 -0.6907 -1.1961 24 6 1.7339 -1.9720 -1.4598 25 8 1.0582 -2.6988 -0.7636 26 6 2.3867 -2.3682 -2.7661 27 6 3.1137 -1.0830 -3.2113 28 6 2.7906 -0.0940 -2.1127 29 8 3.1703 1.0564 -2.0695 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.1493 0.5390 2.5435 34 1 1.3047 -0.0085 5.3539 35 1 2.4009 1.0408 4.4231 36 1 3.7241 0.5521 6.2576 37 1 4.2235 -0.7117 5.1279 38 1 2.2125 -1.0273 7.3304 39 1 3.9136 -1.5378 7.3832 40 1 2.6267 -3.4983 6.7704 41 1 3.4360 -2.9438 5.2854 42 1 -1.6071 -4.0074 3.7363 43 1 1.4753 -2.9512 3.3211 44 1 0.2212 -1.7989 3.8147 45 1 1.6363 -2.6588 -3.5013 46 1 3.0999 -3.1771 -2.6074 47 1 2.7250 -0.7342 -4.1680 48 1 4.1891 -1.2497 -3.2733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034230721.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:28 Heat of formation + Delta-G solvation = -72.572350 kcal Electronic energy + Delta-G solvation = -31276.984128 eV Core-core repulsion = 27140.071942 eV Total energy + Delta-G solvation = -4136.912186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -42.09670 -39.49468 -38.54673 -37.62809 -35.83908 -34.42701 -34.34762 -33.51351 -30.98743 -30.65176 -29.40881 -26.27905 -26.05185 -24.86650 -24.19486 -23.02498 -22.46240 -20.90032 -20.12114 -19.21717 -19.05773 -17.58117 -17.25362 -16.70722 -16.58583 -15.96356 -15.60795 -15.29672 -14.76516 -14.59777 -14.28181 -14.20655 -14.07123 -13.92846 -13.80808 -13.37262 -13.28005 -13.16618 -12.83883 -12.50802 -12.42749 -12.31803 -12.06170 -11.89505 -11.54975 -11.31198 -11.10497 -10.97637 -10.69072 -10.60493 -10.43718 -10.25256 -10.21675 -10.11295 -9.96202 -9.94147 -9.76271 -9.49787 -9.26926 -8.54824 -8.33906 -6.60160 -5.71433 -3.17138 1.49702 2.27943 2.68399 2.87416 3.39283 3.45650 3.46376 3.50057 3.92877 4.08600 4.26654 4.53107 4.61349 4.74221 4.83892 4.88954 5.14415 5.20198 5.26598 5.35320 5.36710 5.42165 5.48497 5.54004 5.65169 5.66343 5.74103 5.93144 6.03757 6.05335 6.21427 6.34675 6.49715 6.62424 6.66849 6.67963 6.76553 6.79763 6.91703 6.98444 7.12829 7.26106 7.39898 7.74285 7.79880 7.87519 7.89389 8.49941 8.53805 9.28197 9.95480 10.41502 11.34331 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.013637 B = 0.003739 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.705347 B = 7487.061663 C = 8565.699363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.109 3.891 3 H 0.125 0.875 4 C 0.508 3.492 5 O -0.523 6.523 6 N -0.711 5.711 7 C 0.121 3.879 8 H 0.072 0.928 9 C -0.115 4.115 10 C -0.098 4.098 11 C -0.147 4.147 12 C 0.155 3.845 13 N -0.586 5.586 14 C -0.264 4.264 15 H 0.065 0.935 16 C 0.007 3.993 17 N -0.895 5.895 18 Si 0.897 3.103 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.283 1.283 22 C 0.177 3.823 23 N -0.558 5.558 24 C 0.525 3.475 25 O -0.448 6.448 26 C -0.155 4.155 27 C -0.154 4.154 28 C 0.530 3.470 29 O -0.493 6.493 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.395 0.605 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.031 0.969 42 H 0.254 0.746 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.404 9.420 -13.681 17.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.003 3.997 3 H 0.143 0.857 4 C 0.292 3.708 5 O -0.398 6.398 6 N -0.362 5.362 7 C 0.016 3.984 8 H 0.090 0.910 9 C -0.153 4.153 10 C -0.136 4.136 11 C -0.188 4.188 12 C 0.027 3.973 13 N -0.308 5.308 14 C -0.394 4.394 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.538 5.538 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.051 3.949 23 N -0.302 5.302 24 C 0.313 3.687 25 O -0.315 6.315 26 C -0.195 4.195 27 C -0.193 4.193 28 C 0.319 3.681 29 O -0.366 6.366 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.229 0.771 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.064 0.936 43 H 0.051 0.949 44 H 0.093 0.907 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.137 0.863 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.605 8.806 -13.453 17.382 hybrid contribution -1.190 0.470 0.547 1.391 sum 5.415 9.276 -12.906 16.791 Atomic orbital electron populations 1.22119 0.91125 1.05283 1.03486 1.21251 0.97087 0.97820 0.83553 0.85704 1.20275 0.81014 0.84917 0.84641 1.90717 1.37723 1.25124 1.86242 1.46027 1.53274 1.31429 1.05509 1.21867 0.99694 0.94556 0.82278 0.90989 1.21272 1.01008 0.96691 0.96335 1.20208 0.97340 0.98448 0.97564 1.21498 1.00127 0.99075 0.98069 1.20727 0.88012 0.93515 0.95085 1.43527 1.01160 1.75875 1.10226 1.19125 0.89604 1.39500 0.91132 0.91736 1.25060 0.98966 0.98536 0.96656 1.70100 1.27739 1.44199 1.11784 0.86463 0.84204 0.77814 0.78817 1.21127 1.21716 1.20894 1.21346 0.97217 0.91577 0.84774 1.46500 1.47334 1.14405 1.21926 1.20696 0.79994 0.80444 0.87608 1.90870 1.34895 1.53697 1.52059 1.22445 1.02077 0.99318 0.95655 1.22433 1.04492 0.93592 0.98808 1.20828 0.75907 0.87906 0.83432 1.90756 1.51734 1.17035 1.77052 0.91241 0.89751 0.89934 0.77138 0.89986 0.93100 0.93711 0.93319 0.92066 0.93468 0.93593 0.95064 0.93583 0.94902 0.90696 0.86332 0.86176 0.86282 0.86203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.07 37.16 0.34 -1.64 16 2 C 0.11 1.48 3.12 -69.08 -0.22 1.26 16 3 H 0.13 1.46 7.41 -51.93 -0.38 1.08 16 4 C 0.51 8.95 6.74 -10.98 -0.07 8.87 16 5 O -0.52 -11.34 14.44 -11.08 -0.16 -11.50 16 6 N -0.71 -11.78 4.87 -54.18 -0.26 -12.04 16 7 C 0.12 2.35 2.27 -68.32 -0.16 2.19 16 8 H 0.07 1.52 6.76 -51.93 -0.35 1.17 16 9 C -0.11 -1.95 5.06 -28.02 -0.14 -2.09 16 10 C -0.10 -1.59 5.15 -29.79 -0.15 -1.74 16 11 C -0.15 -2.62 5.74 -28.58 -0.16 -2.78 16 12 C 0.15 3.32 5.65 -4.09 -0.02 3.30 16 13 N -0.59 -14.68 2.26 -171.87 -0.39 -15.07 16 14 C -0.26 -7.20 9.43 -15.06 -0.14 -7.34 16 15 H 0.06 1.73 7.88 -52.48 -0.41 1.32 16 16 C 0.01 0.20 4.83 -17.43 -0.08 0.12 16 17 N -0.89 -26.60 11.12 55.49 0.62 -25.98 16 18 Si 0.90 21.76 29.59 -169.99 -5.03 16.73 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 C 0.18 4.35 4.29 -2.76 -0.01 4.34 16 23 N -0.56 -7.30 2.28 -109.48 -0.25 -7.55 16 24 C 0.52 7.24 6.70 -11.08 -0.07 7.16 16 25 O -0.45 -8.40 15.11 -11.03 -0.17 -8.56 16 26 C -0.16 -1.20 7.03 -26.94 -0.19 -1.39 16 27 C -0.15 -1.00 7.03 -26.95 -0.19 -1.19 16 28 C 0.53 5.99 8.08 -11.09 -0.09 5.90 16 29 O -0.49 -6.84 17.23 5.61 0.10 -6.74 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 1.29 6.66 -51.93 -0.35 0.95 16 32 H 0.08 0.88 7.56 -51.93 -0.39 0.49 16 33 H 0.39 5.22 7.96 -40.82 -0.33 4.89 16 34 H 0.08 1.57 7.49 -51.93 -0.39 1.18 16 35 H 0.05 0.72 7.94 -51.93 -0.41 0.31 16 36 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 37 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 1.00 7.99 -51.93 -0.41 0.59 16 41 H 0.03 0.66 8.06 -51.93 -0.42 0.25 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.03 0.96 8.03 -51.93 -0.42 0.54 16 44 H 0.07 2.02 6.37 -51.93 -0.33 1.69 16 45 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 379.33 15.07 5.72 5.72 Total: -1.00 -36.59 379.33 -8.69 -45.28 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.49 Total: 4.73 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.37 Total: 14.98 kcal Atomic # 7 Polarization: -60.36 SS G_CDS: -0.28 Total: -60.64 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.23 Total: -26.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.59 -8.69 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034230721.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.292 kcal (2) G-P(sol) polarization free energy of solvation -36.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds