Wall clock time and date at job start Tue Mar 31 2020 21:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47173 * 2 1 4 4 C 1.50703 * 109.47161 * 119.99513 * 2 1 3 5 5 O 1.21281 * 119.99782 * 96.39164 * 4 2 1 6 6 N 1.34772 * 119.99940 * 276.39103 * 4 2 1 7 7 C 1.46928 * 120.63484 * 354.88460 * 6 4 2 8 8 C 1.53193 * 108.77512 * 126.36871 * 7 6 4 9 9 C 1.53037 * 109.31445 * 54.63988 * 8 7 6 10 10 C 1.53044 * 109.53404 * 298.63519 * 9 8 7 11 11 H 1.08997 * 109.49639 * 301.37454 * 10 9 8 12 12 N 1.46503 * 109.49517 * 181.31448 * 10 9 8 13 13 C 1.36945 * 119.99697 * 84.99721 * 12 10 9 14 14 H 1.07993 * 119.99965 * 359.72600 * 13 12 10 15 15 C 1.38812 * 119.99692 * 179.72447 * 13 12 10 16 16 N 1.31620 * 120.00265 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 119.99892 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46753 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47102 * 119.99923 * 17 15 13 20 20 H 1.48497 * 109.47084 * 240.00104 * 17 15 13 21 21 C 1.46930 * 120.62877 * 174.86662 * 6 4 2 22 22 N 1.46896 * 109.47347 * 239.99514 * 2 1 3 23 23 C 1.46898 * 111.00442 * 183.64809 * 22 2 1 24 24 C 1.46907 * 110.99624 * 59.69174 * 22 2 1 25 25 C 1.52997 * 109.46714 * 196.58643 * 24 22 2 26 26 F 1.39901 * 109.47507 * 53.16825 * 25 24 22 27 27 F 1.39907 * 109.46854 * 173.16728 * 25 24 22 28 28 F 1.39898 * 109.47555 * 293.16551 * 25 24 22 29 29 H 1.08997 * 109.46705 * 176.30588 * 1 2 3 30 30 H 1.09006 * 109.46984 * 296.30152 * 1 2 3 31 31 H 1.08999 * 109.47009 * 56.30344 * 1 2 3 32 32 H 1.09002 * 109.58173 * 6.58253 * 7 6 4 33 33 H 1.09000 * 109.70170 * 246.22937 * 7 6 4 34 34 H 1.08997 * 109.49918 * 294.68301 * 8 7 6 35 35 H 1.09001 * 109.49294 * 174.58795 * 8 7 6 36 36 H 1.08997 * 109.46197 * 178.61248 * 9 8 7 37 37 H 1.09001 * 109.46056 * 58.64748 * 9 8 7 38 38 H 0.96997 * 120.00275 * 264.72617 * 12 10 9 39 39 H 0.96997 * 119.99769 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.59068 * 113.84500 * 21 6 4 41 41 H 1.09002 * 109.58733 * 353.41359 * 21 6 4 42 42 H 1.09000 * 109.46860 * 59.88757 * 23 22 2 43 43 H 1.09003 * 109.46851 * 179.88489 * 23 22 2 44 44 H 1.09002 * 109.47031 * 299.88662 * 23 22 2 45 45 H 1.08989 * 109.47292 * 316.58820 * 24 22 2 46 46 H 1.08999 * 109.46759 * 76.58876 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3447 -1.8806 1.1701 6 7 2.1345 -0.0450 2.3981 7 6 1.8673 1.3983 2.4633 8 6 0.8205 1.6573 3.5515 9 6 1.2998 1.0468 4.8704 10 6 1.4608 -0.4662 4.7053 11 1 0.5082 -0.9028 4.4055 12 7 1.8894 -1.0539 5.9770 13 6 0.9591 -1.3888 6.9245 14 1 -0.0900 -1.2156 6.7361 15 6 1.3648 -1.9510 8.1272 16 7 2.6435 -2.1626 8.3566 17 14 0.0958 -2.4084 9.4194 18 1 -1.2619 -2.0723 8.9206 19 1 0.1752 -3.8651 9.6972 20 1 0.3655 -1.6510 10.6679 21 6 2.5148 -0.7493 3.6303 22 7 2.0197 -0.6926 -1.1993 23 6 3.4855 -0.7882 -1.1905 24 6 1.5426 -0.0307 -2.4210 25 6 1.7078 -0.9774 -3.6115 26 9 1.0920 -2.2003 -3.3240 27 9 1.1131 -0.4107 -4.7440 28 9 3.0694 -1.1870 -3.8554 29 1 -0.3632 -1.0255 -0.0662 30 1 -0.3633 0.4554 0.9213 31 1 -0.3633 0.5701 -0.8550 32 1 1.4876 1.7433 1.5015 33 1 2.7864 1.9316 2.7060 34 1 -0.1259 1.2008 3.2619 35 1 0.6838 2.7315 3.6763 36 1 0.5682 1.2510 5.6522 37 1 2.2585 1.4859 5.1467 38 1 2.8318 -1.2095 6.1463 39 1 2.9268 -2.5557 9.1968 40 1 3.4875 -0.3931 3.9695 41 1 2.5624 -1.8213 3.4385 42 1 3.8081 -1.3421 -0.3089 43 1 3.8212 -1.3070 -2.0885 44 1 3.9149 0.2134 -1.1676 45 1 0.4903 0.2287 -2.3064 46 1 2.1235 0.8752 -2.5939 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209232344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:46 Heat of formation + Delta-G solvation = -181.213957 kcal Electronic energy + Delta-G solvation = -30804.444176 eV Core-core repulsion = 26120.964196 eV Total energy + Delta-G solvation = -4683.479980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -51.03959 -48.61461 -48.46923 -41.59661 -39.24577 -37.94091 -36.23651 -33.98518 -32.77780 -32.54315 -30.57545 -30.01218 -26.75971 -26.13040 -25.97989 -24.66660 -23.39479 -22.84991 -21.36697 -19.97484 -19.51368 -19.33896 -19.11756 -18.85345 -17.96766 -17.17655 -16.83748 -16.44991 -16.18785 -15.75474 -15.67811 -15.52444 -15.32458 -15.31153 -15.12823 -14.95618 -14.79517 -14.70757 -14.68344 -14.62165 -14.37569 -13.94265 -13.75150 -13.50106 -13.17259 -12.98036 -12.94275 -12.88128 -12.62319 -12.49981 -12.29502 -12.24735 -12.15528 -12.07702 -11.81427 -11.71095 -11.60140 -10.92497 -10.70080 -9.68082 -9.52217 -9.03420 -7.96767 -5.26163 1.45484 1.47047 1.52828 1.56464 1.65865 1.94000 2.51768 2.57173 2.91088 3.09840 3.34470 3.37531 3.48810 3.77526 3.93095 3.96904 4.05028 4.05673 4.10504 4.17547 4.19404 4.30299 4.37598 4.43344 4.46648 4.60526 4.72026 4.78251 4.83506 4.84275 4.87899 5.03941 5.08596 5.18191 5.25983 5.41595 5.43948 5.50723 5.60778 5.65976 5.70770 6.25296 6.45467 7.18246 7.30960 8.04366 8.27764 9.26858 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.002373 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.755299 B =11796.174502 C =12052.266568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 H 0.109 0.891 4 C 0.510 3.490 5 O -0.571 6.571 6 N -0.602 5.602 7 C 0.101 3.899 8 C -0.123 4.123 9 C -0.128 4.128 10 C 0.168 3.832 11 H 0.032 0.968 12 N -0.737 5.737 13 C -0.236 4.236 14 H 0.074 0.926 15 C -0.076 4.076 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.265 1.265 19 H -0.296 1.296 20 H -0.291 1.291 21 C 0.121 3.879 22 N -0.541 5.541 23 C 0.002 3.998 24 C 0.009 3.991 25 C 0.454 3.546 26 F -0.188 7.188 27 F -0.183 7.183 28 F -0.190 7.190 29 H 0.051 0.949 30 H 0.082 0.918 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.104 0.896 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.372 0.628 39 H 0.251 0.749 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.148 0.852 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.438 14.694 -26.114 30.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 H 0.126 0.874 4 C 0.299 3.701 5 O -0.450 6.450 6 N -0.336 5.336 7 C -0.020 4.020 8 C -0.162 4.162 9 C -0.169 4.169 10 C 0.059 3.941 11 H 0.050 0.950 12 N -0.377 5.377 13 C -0.368 4.368 14 H 0.092 0.908 15 C -0.268 4.268 16 N -0.620 5.620 17 Si 0.801 3.199 18 H -0.190 1.190 19 H -0.223 1.223 20 H -0.218 1.218 21 C -0.003 4.003 22 N -0.266 5.266 23 C -0.145 4.145 24 C -0.120 4.120 25 C 0.399 3.601 26 F -0.170 7.170 27 F -0.164 7.164 28 F -0.172 7.172 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.124 0.876 32 H 0.139 0.861 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.204 0.796 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.166 0.834 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.633 13.554 -26.085 29.620 hybrid contribution 0.522 -0.542 1.214 1.428 sum -3.111 13.012 -24.871 28.242 Atomic orbital electron populations 1.21963 0.89951 1.03557 1.05002 1.21713 0.98613 0.96783 0.86166 0.87415 1.21055 0.77087 0.86878 0.85090 1.90708 1.50303 1.18702 1.85251 1.48178 1.67932 1.10546 1.06920 1.22184 1.00019 0.78234 1.01612 1.21899 0.98503 1.02431 0.93349 1.22073 1.00889 0.95950 0.97961 1.20641 0.95152 0.93443 0.84880 0.95001 1.42525 1.06253 1.74475 1.14427 1.19577 0.89881 1.32209 0.95098 0.90766 1.25561 0.97893 1.02777 1.00579 1.69822 1.15185 1.51450 1.25554 0.85095 0.78833 0.76938 0.79038 1.18967 1.22347 1.21804 1.21524 0.97658 0.97041 0.84077 1.61366 1.11977 1.52658 1.00589 1.22840 0.85770 1.01744 1.04196 1.23461 1.07862 0.94338 0.86317 1.20824 0.73129 0.81158 0.84963 1.93197 1.82890 1.47452 1.93435 1.93190 1.83875 1.84671 1.54694 1.93091 1.33619 1.95533 1.94964 0.92974 0.89888 0.87589 0.86051 0.89856 0.91463 0.87808 0.93599 0.92720 0.79592 0.94016 0.91620 0.92480 0.92454 0.89781 0.92794 0.83420 0.86705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.73 71.98 0.63 -1.21 16 2 C 0.08 1.24 1.64 44.17 0.07 1.31 16 3 H 0.11 0.90 6.33 -2.39 -0.02 0.88 16 4 C 0.51 13.80 6.00 87.66 0.53 14.32 16 5 O -0.57 -21.72 14.39 -3.03 -0.04 -21.76 16 6 N -0.60 -15.45 2.97 -818.88 -2.43 -17.88 16 7 C 0.10 1.59 6.15 86.36 0.53 2.12 16 8 C -0.12 -2.31 6.08 30.67 0.19 -2.13 16 9 C -0.13 -3.97 5.47 30.62 0.17 -3.81 16 10 C 0.17 6.54 2.92 45.07 0.13 6.67 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 N -0.74 -37.29 5.13 -322.56 -1.65 -38.94 16 13 C -0.24 -13.12 9.93 84.03 0.83 -12.29 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 16 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 17 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 C 0.12 4.25 5.89 86.36 0.51 4.76 16 22 N -0.54 -9.77 4.13 -901.47 -3.72 -13.49 16 23 C 0.00 0.04 8.84 127.69 1.13 1.17 16 24 C 0.01 0.09 4.95 86.30 0.43 0.52 16 25 C 0.45 7.21 3.24 71.98 0.23 7.45 16 26 F -0.19 -4.15 17.11 44.97 0.77 -3.38 16 27 F -0.18 -2.70 17.32 44.97 0.78 -1.92 16 28 F -0.19 -3.46 14.51 44.97 0.65 -2.81 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.93 7.83 -2.38 -0.02 0.92 16 31 H 0.11 0.52 6.27 -2.39 -0.01 0.50 16 32 H 0.12 0.93 5.21 -2.39 -0.01 0.92 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.37 20.31 7.80 -92.71 -0.72 19.59 16 39 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 40 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.40 7.04 -2.39 -0.02 2.39 16 42 H 0.06 1.55 5.94 -2.39 -0.01 1.54 16 43 H 0.08 1.67 5.39 -2.39 -0.01 1.66 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.15 0.80 5.66 -2.39 -0.01 0.79 16 46 H 0.12 0.51 8.04 -2.39 -0.02 0.50 16 Total: -1.00 -76.76 369.69 2.79 -73.97 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: 0.29 Total: 22.33 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 5.84 Total: 14.97 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -7.53 Total: -129.84 kcal Atomic # 8 Polarization: -21.72 SS G_CDS: -0.04 Total: -21.76 kcal Atomic # 9 Polarization: -10.31 SS G_CDS: 2.20 Total: -8.11 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -76.76 2.79 -73.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209232344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.243 kcal (2) G-P(sol) polarization free energy of solvation -76.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds