Wall clock time and date at job start Tue Mar 31 2020 21:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.47009 * 2 1 4 4 C 1.50700 * 109.46923 * 119.99690 * 2 1 3 5 5 O 1.21276 * 119.99911 * 120.00411 * 4 2 1 6 6 N 1.34781 * 119.99938 * 299.99862 * 4 2 1 7 7 C 1.46503 * 119.99805 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46771 * 175.13048 * 7 6 4 9 9 N 1.46500 * 110.01791 * 303.89584 * 8 7 6 10 10 C 1.36938 * 120.00041 * 301.46911 * 9 8 7 11 11 H 1.08007 * 120.00043 * 354.60268 * 10 9 8 12 12 C 1.38808 * 120.00351 * 174.60591 * 10 9 8 13 13 N 1.31624 * 119.99821 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00523 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47284 * 59.99103 * 14 12 10 16 16 H 1.48500 * 109.47201 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46530 * 299.99841 * 14 12 10 18 18 C 1.54274 * 110.02957 * 182.45973 * 8 7 6 19 19 C 1.54884 * 104.19314 * 217.10428 * 18 8 7 20 20 C 1.54891 * 102.75390 * 37.94039 * 19 18 8 21 21 C 1.53868 * 110.03362 * 65.29229 * 8 7 6 22 22 N 1.46497 * 109.47093 * 239.99662 * 2 1 3 23 23 C 1.33885 * 122.76058 * 120.00215 * 22 2 1 24 24 O 1.21223 * 125.39429 * 359.97438 * 23 22 2 25 25 C 1.51310 * 109.20278 * 179.97438 * 23 22 2 26 26 C 1.54232 * 103.69764 * 359.92126 * 25 23 22 27 27 C 1.33873 * 122.76248 * 299.99661 * 22 2 1 28 28 O 1.21226 * 125.39929 * 0.02562 * 27 22 2 29 29 H 1.09004 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46732 * 300.00176 * 1 2 3 31 31 H 1.08996 * 109.46910 * 59.99984 * 1 2 3 32 32 H 0.96995 * 120.00073 * 0.02562 * 6 4 2 33 33 H 1.09005 * 109.46594 * 295.12915 * 7 6 4 34 34 H 1.08999 * 109.47506 * 55.12537 * 7 6 4 35 35 H 0.97000 * 119.99976 * 121.46156 * 9 8 7 36 36 H 0.96999 * 120.00133 * 180.02562 * 13 12 10 37 37 H 1.09007 * 110.48050 * 335.77856 * 18 8 7 38 38 H 1.09000 * 110.48811 * 98.42045 * 18 8 7 39 39 H 1.08997 * 110.75912 * 279.62275 * 19 18 8 40 40 H 1.09005 * 110.75627 * 156.25613 * 19 18 8 41 41 H 1.08999 * 110.49007 * 203.38019 * 20 19 18 42 42 H 1.09000 * 110.48264 * 80.73227 * 20 19 18 43 43 H 1.09007 * 110.03153 * 238.56134 * 21 8 7 44 44 H 1.08995 * 110.03694 * 359.97438 * 21 8 7 45 45 H 1.08997 * 110.60679 * 118.51440 * 25 23 22 46 46 H 1.09005 * 110.60556 * 241.32197 * 25 23 22 47 47 H 1.08991 * 110.60625 * 118.59660 * 26 25 23 48 48 H 1.09005 * 110.60218 * 241.56135 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1193 6 7 1.7067 -0.2498 2.4546 7 6 2.1955 -0.9400 3.6509 8 6 1.7878 -0.1515 4.8970 9 7 2.2852 1.2234 4.8054 10 6 3.6274 1.4583 4.6694 11 1 4.3270 0.6368 4.7172 12 6 4.0890 2.7522 4.4703 13 7 3.2364 3.7533 4.4116 14 14 5.9199 3.0726 4.2842 15 1 6.4369 2.3227 3.1114 16 1 6.1502 4.5257 4.0828 17 1 6.6279 2.6238 5.5100 18 6 2.3489 -0.8343 6.1614 19 6 1.2337 -0.6484 7.2200 20 6 -0.0606 -0.8308 6.3889 21 6 0.2559 -0.1493 5.0416 22 7 2.0184 -0.6907 -1.1961 23 6 2.7906 -0.0940 -2.1127 24 8 3.1704 1.0564 -2.0695 25 6 3.1142 -1.0833 -3.2109 26 6 2.3904 -2.3710 -2.7675 27 6 1.7292 -1.9704 -1.4625 28 8 1.0481 -2.6953 -0.7697 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.1488 0.5387 2.5436 33 1 1.7630 -1.9396 3.6957 34 1 3.2820 -1.0159 3.6082 35 1 1.6638 1.9674 4.8409 36 1 3.5589 4.6574 4.2721 37 1 2.5261 -1.8938 5.9760 38 1 3.2671 -0.3438 6.4844 39 1 1.2761 0.3503 7.6546 40 1 1.3057 -1.4114 7.9952 41 1 -0.9007 -0.3377 6.8779 42 1 -0.2724 -1.8897 6.2403 43 1 -0.1174 0.8748 5.0445 44 1 -0.1972 -0.7096 4.2238 45 1 2.7256 -0.7349 -4.1678 46 1 4.1898 -1.2496 -3.2727 47 1 1.6417 -2.6631 -3.5038 48 1 3.1061 -3.1771 -2.6060 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753664608.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:23 Heat of formation + Delta-G solvation = -91.856293 kcal Electronic energy + Delta-G solvation = -31024.312187 eV Core-core repulsion = 26886.563787 eV Total energy + Delta-G solvation = -4137.748400 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.05245 -39.40315 -38.54982 -38.07943 -35.82557 -34.32866 -34.10833 -33.31705 -30.90910 -30.18741 -28.27533 -27.75613 -26.26051 -25.13699 -24.05695 -23.13329 -22.44796 -20.88166 -20.06102 -19.24236 -18.53958 -17.57683 -17.17083 -16.96060 -16.72209 -15.98758 -15.69894 -15.22656 -14.80315 -14.66708 -14.46475 -14.21852 -14.14402 -13.96675 -13.87688 -13.59313 -13.32342 -13.14767 -12.87980 -12.65990 -12.50528 -12.41241 -11.95680 -11.70366 -11.55613 -11.45121 -11.11387 -10.77223 -10.73623 -10.64577 -10.54679 -10.53644 -10.25073 -10.19746 -10.13809 -9.97883 -9.87630 -9.65188 -9.27814 -8.90416 -8.45885 -7.02041 -5.81261 -3.10285 1.51929 2.31657 2.69676 2.98601 3.43161 3.48120 3.49914 3.61250 3.96080 4.09027 4.26792 4.56593 4.62343 4.85042 4.89249 5.02982 5.10260 5.11926 5.20104 5.22569 5.28036 5.37162 5.39851 5.54431 5.56633 5.67734 5.72398 5.77094 5.93418 5.94013 5.96304 6.08545 6.17406 6.25246 6.30439 6.42568 6.54967 6.59232 6.76484 6.79895 6.81166 6.97757 7.07033 7.30643 7.69909 7.73778 7.98927 8.37464 8.61654 9.49424 10.02633 10.38130 11.40636 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.004252 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.532243 B = 6583.149156 C = 8363.327908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 H 0.131 0.869 4 C 0.509 3.491 5 O -0.542 6.542 6 N -0.691 5.691 7 C 0.122 3.878 8 C 0.189 3.811 9 N -0.710 5.710 10 C -0.234 4.234 11 H 0.068 0.932 12 C -0.007 4.007 13 N -0.931 5.931 14 Si 0.900 3.100 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.286 1.286 18 C -0.131 4.131 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.126 4.126 22 N -0.557 5.557 23 C 0.526 3.474 24 O -0.481 6.481 25 C -0.154 4.154 26 C -0.154 4.154 27 C 0.532 3.468 28 O -0.468 6.468 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.402 0.598 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.052 0.948 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.118 0.882 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 -10.613 -11.323 17.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 H 0.149 0.851 4 C 0.292 3.708 5 O -0.419 6.419 6 N -0.341 5.341 7 C -0.004 4.004 8 C 0.097 3.903 9 N -0.352 5.352 10 C -0.365 4.365 11 H 0.086 0.914 12 C -0.203 4.203 13 N -0.579 5.579 14 Si 0.731 3.269 15 H -0.213 1.213 16 H -0.217 1.217 17 H -0.213 1.213 18 C -0.172 4.172 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.164 4.164 22 N -0.300 5.300 23 C 0.315 3.685 24 O -0.352 6.352 25 C -0.194 4.194 26 C -0.194 4.194 27 C 0.321 3.679 28 O -0.338 6.338 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.238 0.762 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.219 0.781 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.279 -11.046 -10.989 17.197 hybrid contribution 0.801 1.025 0.027 1.302 sum -6.478 -10.020 -10.963 16.203 Atomic orbital electron populations 1.22097 0.91445 1.04402 1.03805 1.21276 0.96794 0.98510 0.83356 0.85125 1.20206 0.80956 0.84829 0.84784 1.90664 1.38294 1.26395 1.86581 1.45574 1.52319 1.31468 1.04748 1.21904 0.99830 0.94030 0.84614 1.20463 0.91242 0.87171 0.91464 1.42536 1.05536 0.99850 1.87267 1.19025 0.83703 0.92429 1.41380 0.91390 1.24665 0.97270 0.95830 1.02509 1.69630 1.32713 0.98967 1.56575 0.86377 0.85663 0.76868 0.77968 1.21341 1.21714 1.21290 1.22822 0.99357 0.99074 0.95921 1.22383 0.94691 1.01177 0.97180 1.22300 0.97765 0.99769 0.95974 1.22435 0.95905 1.00953 0.97124 1.46459 1.47191 1.14322 1.22004 1.20847 0.76170 0.88055 0.83439 1.90810 1.50868 1.16934 1.76612 1.22442 1.04594 0.93488 0.98875 1.22506 1.01907 0.99349 0.95623 1.20723 0.79486 0.80413 0.87314 1.90742 1.35958 1.54239 1.52814 0.90362 0.89873 0.91162 0.76234 0.93026 0.91502 0.78113 0.93501 0.92946 0.90282 0.91392 0.92729 0.92347 0.92280 0.91269 0.92043 0.86257 0.86171 0.86429 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.07 37.16 0.34 -1.58 16 2 C 0.11 1.61 3.12 -69.08 -0.22 1.40 16 3 H 0.13 2.06 7.41 -51.93 -0.38 1.67 16 4 C 0.51 9.43 6.79 -10.98 -0.07 9.35 16 5 O -0.54 -11.67 14.80 -10.69 -0.16 -11.83 16 6 N -0.69 -12.38 4.99 -60.29 -0.30 -12.68 16 7 C 0.12 2.29 3.99 -4.04 -0.02 2.28 16 8 C 0.19 3.42 0.68 -130.70 -0.09 3.33 16 9 N -0.71 -15.88 4.76 -46.20 -0.22 -16.10 16 10 C -0.23 -6.07 8.39 -15.06 -0.13 -6.20 16 11 H 0.07 1.79 7.23 -52.48 -0.38 1.41 16 12 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 13 N -0.93 -26.74 13.07 55.49 0.73 -26.01 16 14 Si 0.90 22.47 29.55 -169.99 -5.02 17.44 16 15 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 16 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 C -0.13 -2.28 5.94 -25.07 -0.15 -2.43 16 19 C -0.12 -1.75 6.91 -24.74 -0.17 -1.92 16 20 C -0.12 -1.63 6.83 -25.07 -0.17 -1.80 16 21 C -0.13 -1.91 5.80 -25.61 -0.15 -2.06 16 22 N -0.56 -7.75 2.28 -109.34 -0.25 -8.00 16 23 C 0.53 6.79 8.08 -11.08 -0.09 6.70 16 24 O -0.48 -7.96 17.23 5.61 0.10 -7.87 16 25 C -0.15 -1.12 7.02 -26.94 -0.19 -1.31 16 26 C -0.15 -1.14 7.05 -26.76 -0.19 -1.33 16 27 C 0.53 6.98 6.71 -10.91 -0.07 6.91 16 28 O -0.47 -7.69 15.12 -10.64 -0.16 -7.85 16 29 H 0.08 1.02 6.64 -51.93 -0.35 0.68 16 30 H 0.08 0.90 7.56 -51.93 -0.39 0.50 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.40 6.80 7.41 -40.82 -0.30 6.50 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.45 7.49 -51.93 -0.39 1.06 16 35 H 0.38 9.18 7.28 -40.82 -0.30 8.88 16 36 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.05 0.83 7.85 -51.92 -0.41 0.43 16 38 H 0.08 1.57 7.12 -51.93 -0.37 1.20 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 44 H 0.06 0.87 7.54 -51.93 -0.39 0.47 16 45 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.12 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 385.71 15.07 5.81 5.81 Total: -1.00 -34.44 385.71 -8.35 -42.78 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -7.41 Total: 13.22 kcal Atomic # 6 Polarization: 12.53 SS G_CDS: -1.46 Total: 11.07 kcal Atomic # 7 Polarization: -62.75 SS G_CDS: -0.04 Total: -62.79 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.22 Total: -27.54 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.44 -8.35 -42.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753664608.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.072 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds