Wall clock time and date at job start Tue Mar 31 2020 20:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47214 * 2 1 4 4 C 1.46900 * 110.99706 * 301.49191 * 3 2 1 5 5 C 1.53004 * 109.47116 * 297.83118 * 4 3 2 6 6 C 1.46898 * 110.99931 * 65.43891 * 3 2 1 7 7 H 1.09008 * 110.88504 * 303.88855 * 6 3 2 8 8 C 1.55153 * 111.00984 * 180.02562 * 6 3 2 9 9 C 1.54313 * 102.94537 * 206.39066 * 8 6 3 10 10 N 1.47021 * 107.27313 * 22.18909 * 9 8 6 11 11 C 1.34781 * 125.64855 * 181.02690 * 10 9 8 12 12 O 1.21581 * 119.99763 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99804 * 0.02562 * 11 10 9 14 14 C 1.46502 * 119.99818 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.47028 * 34.99781 * 14 13 11 16 16 C 1.50699 * 109.47277 * 154.99721 * 14 13 11 17 17 H 1.08002 * 119.99621 * 95.50911 * 16 14 13 18 18 C 1.37874 * 120.00300 * 275.51215 * 16 14 13 19 19 N 1.31516 * 119.99856 * 355.30324 * 18 16 14 20 20 Si 1.86796 * 120.00280 * 175.29996 * 18 16 14 21 21 H 1.48508 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47000 * 120.00051 * 20 18 16 23 23 H 1.48495 * 109.47142 * 240.00133 * 20 18 16 24 24 C 1.52999 * 109.47273 * 275.00201 * 14 13 11 25 25 F 1.39898 * 109.47040 * 295.48931 * 24 14 13 26 26 F 1.39903 * 109.47549 * 55.48666 * 24 14 13 27 27 F 1.39901 * 109.47185 * 175.48984 * 24 14 13 28 28 C 1.47420 * 108.70130 * 1.28823 * 10 9 8 29 29 H 1.08999 * 109.47381 * 305.02566 * 1 2 3 30 30 H 1.09002 * 109.47512 * 65.02721 * 1 2 3 31 31 H 1.09003 * 109.46624 * 185.02611 * 1 2 3 32 32 H 1.09001 * 109.47274 * 240.00325 * 2 1 3 33 33 H 1.08997 * 109.47570 * 120.00394 * 2 1 3 34 34 H 1.08993 * 109.47862 * 57.83099 * 4 3 2 35 35 H 1.08998 * 109.46869 * 177.83810 * 4 3 2 36 36 H 1.09002 * 109.47287 * 185.48312 * 5 4 3 37 37 H 1.08997 * 109.47104 * 305.48647 * 5 4 3 38 38 H 1.09001 * 109.46778 * 65.47746 * 5 4 3 39 39 H 1.08997 * 110.72111 * 88.02022 * 8 6 3 40 40 H 1.09007 * 110.86668 * 324.82226 * 8 6 3 41 41 H 1.09006 * 109.88378 * 262.77156 * 9 8 6 42 42 H 1.09001 * 109.88545 * 141.61282 * 9 8 6 43 43 H 0.96992 * 120.00154 * 0.02562 * 13 11 10 44 44 H 0.97004 * 120.00317 * 5.25263 * 19 18 16 45 45 H 1.09002 * 110.36554 * 94.48691 * 28 10 9 46 46 H 1.09005 * 110.36479 * 216.80464 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5197 2.1201 -1.1695 5 6 2.0432 1.4619 -2.4476 6 6 1.6577 2.0714 1.2473 7 1 0.5805 2.0376 1.4110 8 6 2.1742 3.5344 1.2473 9 6 2.3348 3.8443 2.7504 10 7 2.4670 2.5578 3.4497 11 6 2.6069 2.3979 4.7807 12 8 2.7085 1.2816 5.2515 13 7 2.6340 3.4756 5.5897 14 6 2.7866 3.3019 7.0363 15 1 3.4414 2.4529 7.2333 16 6 3.3883 4.5488 7.6314 17 1 2.7480 5.3068 8.0579 18 6 4.7561 4.7221 7.6311 19 7 5.5407 3.7604 7.1964 20 14 5.4949 6.3230 8.2483 21 1 4.4065 7.2366 8.6797 22 1 6.3911 6.0434 9.3988 23 1 6.2744 6.9614 7.1574 24 6 1.4162 3.0459 7.6667 25 9 0.6091 4.1769 7.5031 26 9 0.8133 1.9486 7.0424 27 9 1.5730 2.7783 9.0308 28 6 2.4275 1.4720 2.4534 29 1 -0.3634 0.5898 0.8415 30 1 -0.3634 0.4339 -0.9316 31 1 -0.3633 -1.0238 0.0900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.4299 2.1018 -1.1716 35 1 1.8657 3.1527 -1.1246 36 1 1.7537 2.0621 -3.3102 37 1 3.1300 1.3924 -2.4016 38 1 1.6189 0.4623 -2.5415 39 1 1.4426 4.2017 0.7919 40 1 3.1330 3.6076 0.7339 41 1 1.4560 4.3760 3.1153 42 1 3.2285 4.4472 2.9113 43 1 2.5525 4.3661 5.2141 44 1 5.1562 2.9602 6.8054 45 1 3.4386 1.1903 2.1590 46 1 1.8938 0.6097 2.8530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932917607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:59 Heat of formation + Delta-G solvation = -183.038092 kcal Electronic energy + Delta-G solvation = -31388.908939 eV Core-core repulsion = 26705.349859 eV Total energy + Delta-G solvation = -4683.559080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.00556 -46.52021 -46.50296 -40.06590 -38.66323 -36.38202 -34.82842 -32.46745 -31.63761 -31.26921 -29.26063 -28.57344 -26.95722 -24.55163 -24.51986 -22.84806 -21.84792 -21.47046 -19.51725 -19.36457 -18.36408 -17.58208 -17.34402 -17.03669 -16.91599 -16.27851 -15.67180 -15.32730 -14.95019 -14.50093 -14.32830 -13.93588 -13.73014 -13.56786 -13.44256 -13.24019 -13.12997 -13.03093 -12.96836 -12.84711 -12.73120 -12.70856 -12.57522 -12.45951 -12.23591 -12.15648 -11.92389 -11.53121 -11.49499 -11.33644 -11.03921 -10.95719 -10.80095 -10.67810 -10.54994 -10.27526 -9.60947 -9.24272 -8.76448 -8.52362 -8.41194 -8.01200 -6.80099 -4.65871 2.99292 3.29252 3.32313 3.46655 3.71491 3.75294 4.07170 4.23782 4.27941 4.58750 4.62937 4.72013 4.89987 4.93055 5.01102 5.02844 5.06208 5.18540 5.23378 5.26817 5.29953 5.32493 5.37282 5.43424 5.53254 5.63448 5.68133 5.74173 5.75307 5.77592 5.87994 5.91544 5.98520 6.03437 6.13262 6.45354 6.63820 6.85332 6.91352 7.24121 7.37453 7.68047 8.00993 8.37581 8.71795 9.14477 9.29641 10.57698 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.003313 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.031003 B = 8449.351468 C = 9472.285904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.045 3.955 5 C -0.149 4.149 6 C 0.065 3.935 7 H 0.061 0.939 8 C -0.121 4.121 9 C 0.103 3.897 10 N -0.641 5.641 11 C 0.712 3.288 12 O -0.591 6.591 13 N -0.723 5.723 14 C 0.234 3.766 15 H 0.090 0.910 16 C -0.612 4.612 17 H 0.072 0.928 18 C 0.041 3.959 19 N -0.872 5.872 20 Si 1.082 2.918 21 H -0.283 1.283 22 H -0.281 1.281 23 H -0.283 1.283 24 C 0.435 3.565 25 F -0.195 7.195 26 F -0.196 7.196 27 F -0.188 7.188 28 C 0.140 3.860 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.391 0.609 44 H 0.280 0.720 45 H 0.071 0.929 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 -0.643 -16.519 18.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.084 4.084 3 N -0.248 5.248 4 C -0.082 4.082 5 C -0.207 4.207 6 C -0.045 4.045 7 H 0.079 0.921 8 C -0.159 4.159 9 C -0.021 4.021 10 N -0.382 5.382 11 C 0.415 3.585 12 O -0.469 6.469 13 N -0.377 5.377 14 C 0.130 3.870 15 H 0.108 0.892 16 C -0.650 4.650 17 H 0.091 0.909 18 C -0.170 4.170 19 N -0.503 5.503 20 Si 0.908 3.092 21 H -0.209 1.209 22 H -0.207 1.207 23 H -0.209 1.209 24 C 0.380 3.620 25 F -0.177 7.177 26 F -0.177 7.177 27 F -0.169 7.169 28 C 0.016 3.984 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.226 0.774 44 H 0.092 0.908 45 H 0.089 0.911 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.711 -0.773 -15.759 16.780 hybrid contribution -2.775 -0.399 -0.441 2.838 sum -8.486 -1.172 -16.200 18.325 Atomic orbital electron populations 1.22419 0.98290 1.02539 1.01942 1.22231 0.92916 0.90004 1.03208 1.62259 1.59103 1.02176 1.01296 1.22126 0.97611 0.98335 0.90156 1.21801 1.02255 1.00505 0.96127 1.22866 0.97846 0.94053 0.89700 0.92111 1.22676 1.02517 0.95227 0.95469 1.21905 1.01507 0.87037 0.91681 1.47553 1.78912 1.07161 1.04530 1.15963 0.77638 0.85715 0.79180 1.90873 1.58317 1.23780 1.73947 1.46806 1.76584 1.07066 1.07239 1.19705 0.86459 1.02642 0.78148 0.89211 1.21944 0.95173 1.04529 1.43396 0.90940 1.26135 0.93426 1.03371 0.94087 1.70702 1.39069 1.06837 1.33715 0.83350 0.75588 0.73415 0.76801 1.20876 1.20710 1.20900 1.21884 0.90621 0.72795 0.76739 1.93048 1.76691 1.52584 1.95370 1.93133 1.86221 1.55876 1.82500 1.93081 1.95907 1.93853 1.34087 1.21883 1.00328 0.90125 0.86106 0.92357 0.92489 0.91996 0.90271 0.90320 0.94556 0.90513 0.92415 0.91664 0.92800 0.90523 0.89504 0.91900 0.91289 0.77391 0.90808 0.91064 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.19 37.16 0.34 -1.29 16 2 C 0.04 0.40 5.60 -3.82 -0.02 0.38 16 3 N -0.52 -5.15 4.64 -223.94 -1.04 -6.18 16 4 C 0.05 0.37 5.13 -3.82 -0.02 0.35 16 5 C -0.15 -1.04 9.58 37.16 0.36 -0.69 16 6 C 0.06 0.72 2.48 -65.45 -0.16 0.56 16 7 H 0.06 0.70 6.29 -51.92 -0.33 0.38 16 8 C -0.12 -1.25 5.05 -24.90 -0.13 -1.37 16 9 C 0.10 1.37 6.15 -3.07 -0.02 1.35 16 10 N -0.64 -11.14 3.32 -176.10 -0.59 -11.73 16 11 C 0.71 15.77 7.92 -86.91 -0.69 15.08 16 12 O -0.59 -15.17 15.20 5.29 0.08 -15.09 16 13 N -0.72 -16.06 4.98 -59.81 -0.30 -16.36 16 14 C 0.23 5.82 1.77 -69.08 -0.12 5.69 16 15 H 0.09 2.51 6.13 -51.92 -0.32 2.19 16 16 C -0.61 -15.69 8.13 -34.44 -0.28 -15.97 16 17 H 0.07 1.86 7.44 -52.49 -0.39 1.47 16 18 C 0.04 1.07 5.45 -17.82 -0.10 0.97 16 19 N -0.87 -24.41 13.62 55.43 0.76 -23.65 16 20 Si 1.08 22.88 29.91 -169.99 -5.08 17.79 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 C 0.44 10.38 2.83 37.16 0.11 10.49 16 25 F -0.20 -4.42 16.63 2.25 0.04 -4.39 16 26 F -0.20 -4.71 15.56 2.25 0.04 -4.67 16 27 F -0.19 -4.49 17.13 2.25 0.04 -4.45 16 28 C 0.14 2.08 5.63 -2.41 -0.01 2.07 16 29 H 0.06 0.56 6.27 -51.93 -0.33 0.24 16 30 H 0.06 0.44 6.62 -51.93 -0.34 0.10 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.64 6.56 -51.93 -0.34 0.30 16 33 H 0.08 0.79 7.12 -51.93 -0.37 0.42 16 34 H 0.04 0.29 6.27 -51.93 -0.33 -0.04 16 35 H 0.08 0.60 6.70 -51.93 -0.35 0.25 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.36 6.78 -51.93 -0.35 0.01 16 39 H 0.08 0.64 7.98 -51.93 -0.41 0.23 16 40 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.39 7.94 7.58 -40.82 -0.31 7.63 16 44 H 0.28 8.12 6.67 -40.82 -0.27 7.85 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.07 1.15 7.80 -51.93 -0.41 0.74 16 LS Contribution 370.37 15.07 5.58 5.58 Total: -1.00 -30.08 370.37 -7.82 -37.90 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.59 Total: 7.63 kcal Atomic # 6 Polarization: 18.37 SS G_CDS: -0.75 Total: 17.62 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -1.17 Total: -57.92 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 9 Polarization: -13.62 SS G_CDS: 0.11 Total: -13.51 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.08 Total: 17.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.08 -7.82 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.139 kcal (2) G-P(sol) polarization free energy of solvation -30.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds