Wall clock time and date at job start Tue Mar 31 2020 20:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46904 * 109.47214 * 2 1 4 4 C 1.46900 * 110.99706 * 301.49191 * 3 2 1 5 5 C 1.53004 * 109.47116 * 297.83118 * 4 3 2 6 6 C 1.46898 * 110.99931 * 65.43891 * 3 2 1 7 7 H 1.09008 * 110.88504 * 303.88855 * 6 3 2 8 8 C 1.55153 * 111.00984 * 180.02562 * 6 3 2 9 9 C 1.54313 * 102.94537 * 206.39066 * 8 6 3 10 10 N 1.47021 * 107.27313 * 22.18909 * 9 8 6 11 11 C 1.34781 * 125.64855 * 181.02690 * 10 9 8 12 12 O 1.21581 * 119.99763 * 180.02562 * 11 10 9 13 13 N 1.34777 * 119.99804 * 0.02562 * 11 10 9 14 14 C 1.46502 * 119.99818 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.47028 * 34.99781 * 14 13 11 16 16 C 1.50699 * 109.47277 * 154.99721 * 14 13 11 17 17 H 1.08002 * 119.99621 * 95.50911 * 16 14 13 18 18 C 1.37874 * 120.00300 * 275.51215 * 16 14 13 19 19 N 1.31516 * 119.99856 * 355.30324 * 18 16 14 20 20 Si 1.86796 * 120.00280 * 175.29996 * 18 16 14 21 21 H 1.48508 * 109.47008 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47000 * 120.00051 * 20 18 16 23 23 H 1.48495 * 109.47142 * 240.00133 * 20 18 16 24 24 C 1.52999 * 109.47273 * 275.00201 * 14 13 11 25 25 F 1.39898 * 109.47040 * 295.48931 * 24 14 13 26 26 F 1.39903 * 109.47549 * 55.48666 * 24 14 13 27 27 F 1.39901 * 109.47185 * 175.48984 * 24 14 13 28 28 C 1.47420 * 108.70130 * 1.28823 * 10 9 8 29 29 H 1.08999 * 109.47381 * 305.02566 * 1 2 3 30 30 H 1.09002 * 109.47512 * 65.02721 * 1 2 3 31 31 H 1.09003 * 109.46624 * 185.02611 * 1 2 3 32 32 H 1.09001 * 109.47274 * 240.00325 * 2 1 3 33 33 H 1.08997 * 109.47570 * 120.00394 * 2 1 3 34 34 H 1.08993 * 109.47862 * 57.83099 * 4 3 2 35 35 H 1.08998 * 109.46869 * 177.83810 * 4 3 2 36 36 H 1.09002 * 109.47287 * 185.48312 * 5 4 3 37 37 H 1.08997 * 109.47104 * 305.48647 * 5 4 3 38 38 H 1.09001 * 109.46778 * 65.47746 * 5 4 3 39 39 H 1.08997 * 110.72111 * 88.02022 * 8 6 3 40 40 H 1.09007 * 110.86668 * 324.82226 * 8 6 3 41 41 H 1.09006 * 109.88378 * 262.77156 * 9 8 6 42 42 H 1.09001 * 109.88545 * 141.61282 * 9 8 6 43 43 H 0.96992 * 120.00154 * 0.02562 * 13 11 10 44 44 H 0.97004 * 120.00317 * 5.25263 * 19 18 16 45 45 H 1.09002 * 110.36554 * 94.48691 * 28 10 9 46 46 H 1.09005 * 110.36479 * 216.80464 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5197 2.1201 -1.1695 5 6 2.0432 1.4619 -2.4476 6 6 1.6577 2.0714 1.2473 7 1 0.5805 2.0376 1.4110 8 6 2.1742 3.5344 1.2473 9 6 2.3348 3.8443 2.7504 10 7 2.4670 2.5578 3.4497 11 6 2.6069 2.3979 4.7807 12 8 2.7085 1.2816 5.2515 13 7 2.6340 3.4756 5.5897 14 6 2.7866 3.3019 7.0363 15 1 3.4414 2.4529 7.2333 16 6 3.3883 4.5488 7.6314 17 1 2.7480 5.3068 8.0579 18 6 4.7561 4.7221 7.6311 19 7 5.5407 3.7604 7.1964 20 14 5.4949 6.3230 8.2483 21 1 4.4065 7.2366 8.6797 22 1 6.3911 6.0434 9.3988 23 1 6.2744 6.9614 7.1574 24 6 1.4162 3.0459 7.6667 25 9 0.6091 4.1769 7.5031 26 9 0.8133 1.9486 7.0424 27 9 1.5730 2.7783 9.0308 28 6 2.4275 1.4720 2.4534 29 1 -0.3634 0.5898 0.8415 30 1 -0.3634 0.4339 -0.9316 31 1 -0.3633 -1.0238 0.0900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 0.4299 2.1018 -1.1716 35 1 1.8657 3.1527 -1.1246 36 1 1.7537 2.0621 -3.3102 37 1 3.1300 1.3924 -2.4016 38 1 1.6189 0.4623 -2.5415 39 1 1.4426 4.2017 0.7919 40 1 3.1330 3.6076 0.7339 41 1 1.4560 4.3760 3.1153 42 1 3.2285 4.4472 2.9113 43 1 2.5525 4.3661 5.2141 44 1 5.1562 2.9602 6.8054 45 1 3.4386 1.1903 2.1590 46 1 1.8938 0.6097 2.8530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932917607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:58 Heat of formation + Delta-G solvation = -202.861082 kcal Electronic energy + Delta-G solvation = -31389.768529 eV Core-core repulsion = 26705.349859 eV Total energy + Delta-G solvation = -4684.418670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.95319 -48.46687 -48.44101 -41.41648 -39.91330 -37.61040 -36.73667 -34.35196 -32.53325 -32.29694 -30.32938 -30.18146 -28.08279 -26.57390 -25.41609 -24.13279 -23.27265 -22.62729 -21.02055 -20.34513 -20.13246 -19.43615 -19.10853 -18.98694 -18.14787 -17.86952 -16.69387 -16.54551 -16.36924 -15.74181 -15.64930 -15.44557 -15.42397 -15.15676 -14.94742 -14.85853 -14.79993 -14.72874 -14.65147 -14.53971 -14.11744 -13.97108 -13.87987 -13.62435 -13.42096 -13.05892 -12.91174 -12.68345 -12.66883 -12.51952 -12.29073 -12.09272 -11.94217 -11.87014 -11.67282 -11.45989 -11.39755 -11.16412 -10.75024 -10.22079 -9.55115 -9.27138 -8.88630 -6.75525 1.44266 1.59233 1.69483 1.84268 1.88713 2.21070 2.47606 2.74495 2.96822 3.09219 3.31513 3.34659 3.40318 3.62207 3.68106 3.96179 4.09481 4.20355 4.22783 4.28627 4.35705 4.44673 4.48001 4.52218 4.60479 4.69489 4.71959 4.79598 4.84597 4.92090 4.98339 5.11661 5.13924 5.17988 5.19635 5.24888 5.36282 5.46212 5.51200 5.89532 6.05766 6.09519 6.16314 6.23990 7.01729 7.13432 7.55344 8.47785 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.015483 B = 0.003313 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.031003 B = 8449.351468 C = 9472.285904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.044 3.956 5 C -0.146 4.146 6 C 0.079 3.921 7 H 0.063 0.937 8 C -0.106 4.106 9 C 0.094 3.906 10 N -0.639 5.639 11 C 0.706 3.294 12 O -0.635 6.635 13 N -0.718 5.718 14 C 0.240 3.760 15 H 0.053 0.947 16 C -0.617 4.617 17 H 0.076 0.924 18 C 0.001 3.999 19 N -0.898 5.898 20 Si 1.130 2.870 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.273 1.273 24 C 0.439 3.561 25 F -0.185 7.185 26 F -0.197 7.197 27 F -0.189 7.189 28 C 0.137 3.863 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.109 0.891 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.402 0.598 44 H 0.261 0.739 45 H 0.063 0.937 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.591 1.365 -18.492 20.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.085 4.085 3 N -0.256 5.256 4 C -0.083 4.083 5 C -0.203 4.203 6 C -0.030 4.030 7 H 0.080 0.920 8 C -0.144 4.144 9 C -0.029 4.029 10 N -0.378 5.378 11 C 0.408 3.592 12 O -0.516 6.516 13 N -0.372 5.372 14 C 0.135 3.865 15 H 0.071 0.929 16 C -0.655 4.655 17 H 0.094 0.906 18 C -0.204 4.204 19 N -0.531 5.531 20 Si 0.949 3.051 21 H -0.187 1.187 22 H -0.206 1.206 23 H -0.198 1.198 24 C 0.383 3.617 25 F -0.166 7.166 26 F -0.179 7.179 27 F -0.170 7.170 28 C 0.013 3.987 29 H 0.063 0.937 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.127 0.873 40 H 0.110 0.890 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.238 0.762 44 H 0.071 0.929 45 H 0.081 0.919 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.614 1.257 -17.798 19.029 hybrid contribution -2.561 -1.102 0.111 2.790 sum -9.175 0.154 -17.688 19.926 Atomic orbital electron populations 1.22354 0.97562 1.02737 1.01900 1.22240 0.93487 0.89729 1.03003 1.62255 1.59588 1.02501 1.01210 1.22217 0.97990 0.98543 0.89516 1.21774 1.01631 1.00837 0.96071 1.22665 0.97162 0.94346 0.88857 0.91967 1.22664 1.03745 0.94872 0.93130 1.22228 1.02050 0.85117 0.93462 1.47548 1.77116 1.09810 1.03281 1.16065 0.77614 0.84821 0.80716 1.90833 1.60187 1.25275 1.75343 1.46308 1.76823 1.07727 1.06378 1.19392 0.86434 1.01156 0.79558 0.92917 1.22092 0.95466 1.04400 1.43535 0.90624 1.27570 0.94121 1.05364 0.93299 1.70842 1.39273 1.07069 1.35920 0.82780 0.75586 0.70124 0.76592 1.18739 1.20613 1.19837 1.21695 0.90389 0.73007 0.76587 1.93061 1.76285 1.51951 1.95317 1.93131 1.86163 1.56051 1.82552 1.93075 1.95928 1.93893 1.34131 1.22000 1.00324 0.89349 0.87004 0.93695 0.91306 0.91527 0.89015 0.92044 0.93970 0.89747 0.90961 0.92519 0.92633 0.87293 0.88991 0.90668 0.91348 0.76153 0.92882 0.91907 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.87 9.19 71.98 0.66 -2.21 16 2 C 0.04 0.74 5.60 86.30 0.48 1.22 16 3 N -0.53 -9.50 4.64 -862.43 -4.00 -13.50 16 4 C 0.04 0.58 5.13 86.30 0.44 1.03 16 5 C -0.15 -1.64 9.58 71.98 0.69 -0.95 16 6 C 0.08 1.66 2.48 46.38 0.12 1.77 16 7 H 0.06 1.33 6.29 -2.38 -0.01 1.31 16 8 C -0.11 -1.90 5.05 31.78 0.16 -1.74 16 9 C 0.09 2.36 6.15 86.73 0.53 2.89 16 10 N -0.64 -22.32 3.32 -829.33 -2.76 -25.08 16 11 C 0.71 32.09 7.92 179.05 1.42 33.51 16 12 O -0.63 -34.09 15.20 -3.97 -0.06 -34.15 16 13 N -0.72 -32.37 4.98 -461.40 -2.30 -34.67 16 14 C 0.24 12.18 1.77 44.24 0.08 12.26 16 15 H 0.05 3.11 6.13 -2.38 -0.01 3.09 16 16 C -0.62 -31.65 8.13 25.60 0.21 -31.44 16 17 H 0.08 3.79 7.44 -2.91 -0.02 3.77 16 18 C 0.00 0.05 5.45 84.65 0.46 0.52 16 19 N -0.90 -51.38 13.62 21.45 0.29 -51.09 16 20 Si 1.13 45.02 29.91 68.60 2.05 47.07 16 21 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 24 C 0.44 21.08 2.83 71.98 0.20 21.29 16 25 F -0.18 -8.20 16.63 44.97 0.75 -7.45 16 26 F -0.20 -9.64 15.56 44.97 0.70 -8.94 16 27 F -0.19 -9.08 17.13 44.97 0.77 -8.31 16 28 C 0.14 4.13 5.63 86.93 0.49 4.62 16 29 H 0.04 0.81 6.27 -2.39 -0.01 0.80 16 30 H 0.07 0.90 6.62 -2.39 -0.02 0.88 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.34 6.56 -2.39 -0.02 1.33 16 33 H 0.06 1.26 7.12 -2.39 -0.02 1.24 16 34 H 0.04 0.53 6.27 -2.39 -0.01 0.51 16 35 H 0.08 1.00 6.70 -2.39 -0.02 0.98 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.05 0.61 6.78 -2.39 -0.02 0.59 16 39 H 0.11 1.34 7.98 -2.39 -0.02 1.32 16 40 H 0.09 1.62 8.11 -2.38 -0.02 1.60 16 41 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 42 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.40 16.23 7.58 -92.71 -0.70 15.53 16 44 H 0.26 15.78 6.67 -92.71 -0.62 15.16 16 45 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 1.78 7.80 -2.38 -0.02 1.76 16 Total: -1.00 -66.58 370.37 1.85 -64.73 By element: Atomic # 1 Polarization: 28.15 SS G_CDS: 0.46 Total: 28.62 kcal Atomic # 6 Polarization: 36.83 SS G_CDS: 5.94 Total: 42.77 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -8.77 Total: -124.34 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.06 Total: -34.15 kcal Atomic # 9 Polarization: -26.92 SS G_CDS: 2.22 Total: -24.70 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.05 Total: 47.07 kcal Total: -66.58 1.85 -64.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932917607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.130 kcal (2) G-P(sol) polarization free energy of solvation -66.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds