Wall clock time and date at job start Tue Mar 31 2020 19:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47381 * 2 1 4 4 C 1.50698 * 109.47269 * 239.99721 * 2 1 3 5 5 O 1.21280 * 120.00253 * 239.99976 * 4 2 1 6 6 N 1.34782 * 119.99885 * 60.00005 * 4 2 1 7 7 C 1.46498 * 119.99731 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46757 * 179.97438 * 7 6 4 9 9 H 1.08993 * 112.84799 * 43.80170 * 8 7 6 10 10 C 1.53780 * 113.61306 * 174.99976 * 8 7 6 11 11 C 1.53786 * 87.07877 * 139.97965 * 10 8 7 12 12 H 1.09005 * 113.61041 * 219.93060 * 11 10 8 13 13 N 1.46498 * 113.61318 * 89.11766 * 11 10 8 14 14 C 1.36939 * 120.00206 * 156.52556 * 13 11 10 15 15 H 1.08005 * 119.99831 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00123 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99846 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47245 * 59.99478 * 18 16 14 20 20 H 1.48503 * 109.47026 * 299.99646 * 18 16 14 21 21 H 1.48495 * 109.46982 * 180.02562 * 18 16 14 22 22 C 1.53778 * 87.17538 * 334.52193 * 11 10 8 23 23 N 1.46905 * 109.47112 * 119.99664 * 2 1 3 24 24 C 1.46896 * 110.99875 * 52.44983 * 23 2 1 25 25 C 1.46897 * 110.99925 * 288.49313 * 23 2 1 26 26 C 1.52996 * 109.47352 * 282.42550 * 25 23 2 27 27 F 1.39907 * 109.46749 * 66.37691 * 26 25 23 28 28 F 1.39898 * 109.47121 * 186.37199 * 26 25 23 29 29 F 1.39890 * 109.47252 * 306.37672 * 26 25 23 30 30 H 1.08997 * 109.46879 * 300.00065 * 1 2 3 31 31 H 1.08997 * 109.47174 * 60.00230 * 1 2 3 32 32 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00023 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47310 * 60.00391 * 7 6 4 35 35 H 1.08997 * 109.47565 * 299.99640 * 7 6 4 36 36 H 1.09000 * 113.61266 * 25.43724 * 10 8 7 37 37 H 1.08989 * 113.61831 * 254.52790 * 10 8 7 38 38 H 0.96996 * 120.00086 * 336.52831 * 13 11 10 39 39 H 0.96994 * 120.00333 * 0.02562 * 17 16 14 40 40 H 1.09002 * 113.61090 * 140.01934 * 22 11 10 41 41 H 1.08994 * 113.61785 * 270.92831 * 22 11 10 42 42 H 1.09008 * 109.47027 * 64.07314 * 24 23 2 43 43 H 1.09000 * 109.46925 * 184.07185 * 24 23 2 44 44 H 1.08998 * 109.47271 * 304.07809 * 24 23 2 45 45 H 1.08999 * 109.47026 * 42.42907 * 25 23 2 46 46 H 1.09006 * 109.46525 * 162.42268 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1947 -0.9410 -3.6506 8 6 1.6842 -0.2201 -4.9000 9 1 1.7691 0.8641 -4.8273 10 6 2.2404 -0.7949 -6.2134 11 6 0.8350 -0.5940 -6.8046 12 1 0.5138 -1.4088 -7.4536 13 7 0.6354 0.7260 -7.4078 14 6 -0.3271 0.9027 -8.3657 15 1 -0.9388 0.0687 -8.6769 16 6 -0.5166 2.1536 -8.9368 17 7 0.2292 3.1698 -8.5580 18 14 -1.8301 2.3947 -10.2430 19 1 -3.1598 2.0536 -9.6768 20 1 -1.5440 1.5110 -11.4017 21 1 -1.8301 3.8109 -10.6895 22 6 0.2979 -0.7025 -5.3678 23 7 2.0197 -0.6924 1.1995 24 6 1.4071 -2.0215 1.3270 25 6 1.7850 0.1133 2.4052 26 6 2.8332 1.2247 2.4878 27 9 2.6440 2.1235 1.4325 28 9 2.7010 1.9008 3.7055 29 9 4.1129 0.6663 2.4010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 1.8309 -1.9686 -3.6505 35 1 3.2847 -0.9414 -3.6509 36 1 2.5379 -1.8410 -6.1407 37 1 3.0025 -0.1682 -6.6762 38 1 1.1850 1.4749 -7.1287 39 1 0.9114 3.0445 -7.8800 40 1 -0.5070 -0.0009 -5.1485 41 1 0.0655 -1.7232 -5.0644 42 1 1.7142 -2.6452 0.4874 43 1 1.7312 -2.4829 2.2599 44 1 0.3216 -1.9227 1.3283 45 1 0.7897 0.5552 2.3588 46 1 1.8594 -0.5227 3.2873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479390708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:57 Heat of formation + Delta-G solvation = -145.544045 kcal Electronic energy + Delta-G solvation = -29931.671816 eV Core-core repulsion = 25249.738600 eV Total energy + Delta-G solvation = -4681.933216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.39495 -47.98565 -47.78455 -40.43093 -38.87445 -37.60943 -34.80538 -33.58750 -31.90590 -30.05029 -29.59554 -27.32411 -26.27543 -25.18716 -24.39216 -23.52167 -22.44418 -21.65629 -20.22351 -18.89802 -18.83782 -18.59545 -17.70100 -17.57832 -17.16695 -16.71424 -15.88136 -15.28713 -15.18681 -14.99936 -14.81776 -14.69042 -14.38472 -14.31943 -14.26246 -14.02117 -13.97352 -13.88280 -13.72865 -13.59844 -13.32161 -13.05301 -12.72868 -12.50408 -12.27241 -12.17571 -12.07141 -11.84365 -11.61059 -11.46990 -10.97352 -10.79184 -10.40338 -10.17499 -10.00059 -9.82369 -9.67052 -9.20621 -9.07820 -8.94861 -8.89640 -7.11282 -6.16865 -3.17498 2.32776 2.52869 2.74589 3.30184 3.48252 3.51174 3.51573 3.63330 3.69104 4.03166 4.37961 4.41320 4.56569 4.60926 4.62051 4.75848 4.91758 4.93579 4.95891 5.04293 5.09963 5.14645 5.29625 5.43176 5.49584 5.55234 5.61020 5.71041 5.77547 5.86445 5.94735 6.09928 6.22929 6.23897 6.27816 6.34387 6.48142 6.61222 6.75805 6.90718 7.43123 7.76924 8.14594 8.68629 9.15593 10.01764 10.16147 11.31108 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.002122 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.303602 B =13190.241014 C =13806.590483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.041 3.959 3 H 0.123 0.877 4 C 0.521 3.479 5 O -0.526 6.526 6 N -0.723 5.723 7 C 0.133 3.867 8 C -0.120 4.120 9 H 0.091 0.909 10 C -0.148 4.148 11 C 0.172 3.828 12 H 0.062 0.938 13 N -0.717 5.717 14 C -0.334 4.334 15 H 0.066 0.934 16 C -0.044 4.044 17 N -0.942 5.942 18 Si 1.080 2.920 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.285 1.285 22 C -0.167 4.167 23 N -0.511 5.511 24 C 0.016 3.984 25 C 0.004 3.996 26 C 0.456 3.544 27 F -0.183 7.183 28 F -0.185 7.185 29 F -0.170 7.170 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.401 0.599 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.368 0.632 39 H 0.255 0.745 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.088 0.912 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.614 -7.553 24.980 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.071 4.071 3 H 0.140 0.860 4 C 0.305 3.695 5 O -0.401 6.401 6 N -0.375 5.375 7 C 0.010 3.990 8 C -0.139 4.139 9 H 0.109 0.891 10 C -0.187 4.187 11 C 0.060 3.940 12 H 0.080 0.920 13 N -0.357 5.357 14 C -0.465 4.465 15 H 0.084 0.916 16 C -0.242 4.242 17 N -0.587 5.587 18 Si 0.911 3.089 19 H -0.222 1.222 20 H -0.222 1.222 21 H -0.210 1.210 22 C -0.208 4.208 23 N -0.234 5.234 24 C -0.130 4.130 25 C -0.126 4.126 26 C 0.401 3.599 27 F -0.165 7.165 28 F -0.166 7.166 29 F -0.151 7.151 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.055 0.945 45 H 0.106 0.894 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.808 -7.370 23.856 25.034 hybrid contribution -0.058 -0.155 1.306 1.316 sum 1.749 -7.525 25.162 26.321 Atomic orbital electron populations 1.22420 0.94573 1.03689 1.03803 1.22099 0.94930 1.00308 0.89759 0.85977 1.20131 0.80485 0.84735 0.84127 1.90672 1.37091 1.25936 1.86424 1.46036 1.53637 1.32315 1.05553 1.21459 0.98857 0.95963 0.82708 1.22759 0.98466 0.99975 0.92654 0.89115 1.23435 0.99433 1.00503 0.95369 1.20982 0.92245 0.89442 0.91323 0.91960 1.42172 1.42333 1.05143 1.46090 1.20079 1.12810 0.97519 1.16082 0.91593 1.25808 1.03660 0.91560 1.03147 1.70892 1.23103 1.31709 1.33034 0.83235 0.74563 0.75922 0.75182 1.22228 1.22184 1.21006 1.23916 0.95627 0.99899 1.01359 1.61676 1.58958 1.03292 0.99498 1.22671 0.96918 0.88800 1.04639 1.23332 0.96392 0.95331 0.97541 1.20544 0.83269 0.82932 0.73153 1.93103 1.95113 1.70671 1.57582 1.93189 1.95925 1.82104 1.45428 1.93224 1.41342 1.84812 1.95734 0.91355 0.90424 0.90967 0.76458 0.91547 0.91738 0.90253 0.91456 0.79865 0.93409 0.91579 0.91299 0.88472 0.90937 0.94508 0.89410 0.85947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 8.34 37.16 0.31 -0.95 16 2 C 0.04 0.37 2.62 -68.86 -0.18 0.19 16 3 H 0.12 1.10 5.37 -51.93 -0.28 0.83 16 4 C 0.52 6.33 6.91 -10.98 -0.08 6.25 16 5 O -0.53 -8.15 14.43 5.56 0.08 -8.07 16 6 N -0.72 -8.26 5.45 -60.29 -0.33 -8.58 16 7 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 8 C -0.12 -1.71 3.65 -89.66 -0.33 -2.04 16 9 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 10 C -0.15 -2.31 7.38 -25.92 -0.19 -2.50 16 11 C 0.17 3.31 4.55 -67.12 -0.31 3.01 16 12 H 0.06 1.23 8.11 -51.93 -0.42 0.81 16 13 N -0.72 -17.39 5.31 -52.63 -0.28 -17.67 16 14 C -0.33 -9.19 9.97 -15.06 -0.15 -9.34 16 15 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 16 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 17 N -0.94 -28.61 13.70 55.49 0.76 -27.85 16 18 Si 1.08 25.44 29.92 -169.99 -5.09 20.35 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 C -0.17 -2.68 7.45 -25.77 -0.19 -2.87 16 23 N -0.51 -4.54 4.15 -236.28 -0.98 -5.52 16 24 C 0.02 0.13 8.73 60.06 0.52 0.65 16 25 C 0.00 0.03 5.01 -3.83 -0.02 0.01 16 26 C 0.46 3.89 3.28 37.16 0.12 4.01 16 27 F -0.18 -1.75 14.69 2.25 0.03 -1.72 16 28 F -0.18 -1.55 17.32 2.25 0.04 -1.51 16 29 F -0.17 -1.84 17.12 2.25 0.04 -1.80 16 30 H 0.07 0.36 6.52 -51.93 -0.34 0.02 16 31 H 0.08 0.51 7.56 -51.93 -0.39 0.12 16 32 H 0.07 0.51 6.23 -51.93 -0.32 0.18 16 33 H 0.40 3.94 7.89 -40.82 -0.32 3.62 16 34 H 0.07 0.87 7.85 -51.93 -0.41 0.47 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.07 1.11 8.14 -51.94 -0.42 0.69 16 38 H 0.37 9.16 6.73 -40.82 -0.27 8.89 16 39 H 0.25 7.58 6.77 -40.82 -0.28 7.31 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 42 H 0.10 1.02 6.09 -51.92 -0.32 0.70 16 43 H 0.07 0.45 7.87 -51.93 -0.41 0.04 16 44 H 0.04 0.23 5.95 -51.93 -0.31 -0.08 16 45 H 0.09 0.39 6.24 -51.93 -0.32 0.06 16 46 H 0.12 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -33.10 375.61 -7.19 -40.29 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -6.52 Total: 9.69 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -0.60 Total: -3.27 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.83 Total: -59.62 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.08 Total: -8.07 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.11 Total: -5.02 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.09 Total: 20.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.10 -7.19 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479390708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.257 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds