Wall clock time and date at job start Tue Mar 31 2020 19:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47381 * 2 1 4 4 C 1.50698 * 109.47269 * 239.99721 * 2 1 3 5 5 O 1.21280 * 120.00253 * 239.99976 * 4 2 1 6 6 N 1.34782 * 119.99885 * 60.00005 * 4 2 1 7 7 C 1.46498 * 119.99731 * 180.02562 * 6 4 2 8 8 C 1.53007 * 109.46757 * 179.97438 * 7 6 4 9 9 H 1.08993 * 112.84799 * 43.80170 * 8 7 6 10 10 C 1.53780 * 113.61306 * 174.99976 * 8 7 6 11 11 C 1.53786 * 87.07877 * 139.97965 * 10 8 7 12 12 H 1.09005 * 113.61041 * 219.93060 * 11 10 8 13 13 N 1.46498 * 113.61318 * 89.11766 * 11 10 8 14 14 C 1.36939 * 120.00206 * 156.52556 * 13 11 10 15 15 H 1.08005 * 119.99831 * 359.97438 * 14 13 11 16 16 C 1.38812 * 120.00123 * 179.97438 * 14 13 11 17 17 N 1.31616 * 119.99846 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99852 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47245 * 59.99478 * 18 16 14 20 20 H 1.48503 * 109.47026 * 299.99646 * 18 16 14 21 21 H 1.48495 * 109.46982 * 180.02562 * 18 16 14 22 22 C 1.53778 * 87.17538 * 334.52193 * 11 10 8 23 23 N 1.46905 * 109.47112 * 119.99664 * 2 1 3 24 24 C 1.46896 * 110.99875 * 52.44983 * 23 2 1 25 25 C 1.46897 * 110.99925 * 288.49313 * 23 2 1 26 26 C 1.52996 * 109.47352 * 282.42550 * 25 23 2 27 27 F 1.39907 * 109.46749 * 66.37691 * 26 25 23 28 28 F 1.39898 * 109.47121 * 186.37199 * 26 25 23 29 29 F 1.39890 * 109.47252 * 306.37672 * 26 25 23 30 30 H 1.08997 * 109.46879 * 300.00065 * 1 2 3 31 31 H 1.08997 * 109.47174 * 60.00230 * 1 2 3 32 32 H 1.08997 * 109.47348 * 180.02562 * 1 2 3 33 33 H 0.96997 * 120.00023 * 359.97438 * 6 4 2 34 34 H 1.09003 * 109.47310 * 60.00391 * 7 6 4 35 35 H 1.08997 * 109.47565 * 299.99640 * 7 6 4 36 36 H 1.09000 * 113.61266 * 25.43724 * 10 8 7 37 37 H 1.08989 * 113.61831 * 254.52790 * 10 8 7 38 38 H 0.96996 * 120.00086 * 336.52831 * 13 11 10 39 39 H 0.96994 * 120.00333 * 0.02562 * 17 16 14 40 40 H 1.09002 * 113.61090 * 140.01934 * 22 11 10 41 41 H 1.08994 * 113.61785 * 270.92831 * 22 11 10 42 42 H 1.09008 * 109.47027 * 64.07314 * 24 23 2 43 43 H 1.09000 * 109.46925 * 184.07185 * 24 23 2 44 44 H 1.08998 * 109.47271 * 304.07809 * 24 23 2 45 45 H 1.08999 * 109.47026 * 42.42907 * 25 23 2 46 46 H 1.09006 * 109.46525 * 162.42268 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7296 -1.6965 -1.1191 6 7 1.7068 -0.2500 -2.4546 7 6 2.1947 -0.9410 -3.6506 8 6 1.6842 -0.2201 -4.9000 9 1 1.7691 0.8641 -4.8273 10 6 2.2404 -0.7949 -6.2134 11 6 0.8350 -0.5940 -6.8046 12 1 0.5138 -1.4088 -7.4536 13 7 0.6354 0.7260 -7.4078 14 6 -0.3271 0.9027 -8.3657 15 1 -0.9388 0.0687 -8.6769 16 6 -0.5166 2.1536 -8.9368 17 7 0.2292 3.1698 -8.5580 18 14 -1.8301 2.3947 -10.2430 19 1 -3.1598 2.0536 -9.6768 20 1 -1.5440 1.5110 -11.4017 21 1 -1.8301 3.8109 -10.6895 22 6 0.2979 -0.7025 -5.3678 23 7 2.0197 -0.6924 1.1995 24 6 1.4071 -2.0215 1.3270 25 6 1.7850 0.1133 2.4052 26 6 2.8332 1.2247 2.4878 27 9 2.6440 2.1235 1.4325 28 9 2.7010 1.9008 3.7055 29 9 4.1129 0.6663 2.4010 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 1.8309 -1.9686 -3.6505 35 1 3.2847 -0.9414 -3.6509 36 1 2.5379 -1.8410 -6.1407 37 1 3.0025 -0.1682 -6.6762 38 1 1.1850 1.4749 -7.1287 39 1 0.9114 3.0445 -7.8800 40 1 -0.5070 -0.0009 -5.1485 41 1 0.0655 -1.7232 -5.0644 42 1 1.7142 -2.6452 0.4874 43 1 1.7312 -2.4829 2.2599 44 1 0.3216 -1.9227 1.3283 45 1 0.7897 0.5552 2.3588 46 1 1.8594 -0.5227 3.2873 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479390708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:56 Heat of formation + Delta-G solvation = -168.885648 kcal Electronic energy + Delta-G solvation = -29932.683984 eV Core-core repulsion = 25249.738600 eV Total energy + Delta-G solvation = -4682.945384 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.172 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.07472 -48.65511 -48.50982 -41.32637 -40.17036 -38.42459 -36.21180 -35.19797 -32.67107 -31.69479 -30.29719 -28.53493 -26.90981 -26.53528 -25.64006 -24.98814 -23.49711 -22.66294 -21.14140 -20.04269 -19.57621 -19.49635 -19.39553 -18.30909 -18.18641 -17.49988 -16.83753 -16.73176 -16.34023 -16.02191 -15.72179 -15.53675 -15.44923 -15.26667 -15.20574 -15.00859 -14.86779 -14.79233 -14.69777 -14.66482 -14.53089 -13.82836 -13.62392 -13.43171 -13.28433 -13.05442 -12.93114 -12.81823 -12.76201 -12.54389 -12.45522 -12.22661 -11.95290 -11.77862 -11.57995 -11.36002 -11.01313 -10.87607 -10.66783 -10.07845 -9.52668 -9.11529 -8.39666 -5.33867 1.59089 1.60456 1.68525 1.72573 1.84990 1.97512 2.60116 2.70857 2.90795 3.05709 3.38091 3.40547 3.55945 3.60370 3.69335 3.82214 3.84888 4.00000 4.01925 4.09592 4.22401 4.24789 4.31488 4.38415 4.52251 4.59783 4.64448 4.72717 4.76298 4.84486 4.90009 5.01224 5.06847 5.14468 5.21118 5.27070 5.48221 5.50514 5.63575 5.66329 5.72167 6.49088 6.52450 7.09476 7.22308 8.00001 8.10685 9.12067 Molecular weight = 337.17amu Principal moments of inertia in cm(-1) A = 0.018401 B = 0.002122 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.303602 B =13190.241014 C =13806.590483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.046 3.954 3 H 0.123 0.877 4 C 0.517 3.483 5 O -0.562 6.562 6 N -0.719 5.719 7 C 0.143 3.857 8 C -0.101 4.101 9 H 0.080 0.920 10 C -0.135 4.135 11 C 0.147 3.853 12 H 0.055 0.945 13 N -0.732 5.732 14 C -0.332 4.332 15 H 0.067 0.933 16 C -0.104 4.104 17 N -0.975 5.975 18 Si 1.127 2.873 19 H -0.277 1.277 20 H -0.279 1.279 21 H -0.294 1.294 22 C -0.149 4.149 23 N -0.534 5.534 24 C 0.021 3.979 25 C 0.011 3.989 26 C 0.450 3.550 27 F -0.192 7.192 28 F -0.184 7.184 29 F -0.188 7.188 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.410 0.590 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.056 0.944 38 H 0.361 0.639 39 H 0.244 0.756 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.087 0.913 44 H 0.055 0.945 45 H 0.113 0.887 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.355 -8.509 26.404 27.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.066 4.066 3 H 0.140 0.860 4 C 0.303 3.697 5 O -0.440 6.440 6 N -0.371 5.371 7 C 0.020 3.980 8 C -0.120 4.120 9 H 0.098 0.902 10 C -0.174 4.174 11 C 0.037 3.963 12 H 0.074 0.926 13 N -0.372 5.372 14 C -0.463 4.463 15 H 0.085 0.915 16 C -0.295 4.295 17 N -0.623 5.623 18 Si 0.952 3.048 19 H -0.203 1.203 20 H -0.205 1.205 21 H -0.220 1.220 22 C -0.190 4.190 23 N -0.258 5.258 24 C -0.126 4.126 25 C -0.119 4.119 26 C 0.396 3.604 27 F -0.173 7.173 28 F -0.166 7.166 29 F -0.169 7.169 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.245 0.755 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.193 0.807 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.106 0.894 44 H 0.073 0.927 45 H 0.131 0.869 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.542 -8.370 25.313 26.666 hybrid contribution 0.392 0.068 0.904 0.988 sum 0.935 -8.302 26.216 27.515 Atomic orbital electron populations 1.22405 0.92537 1.03994 1.05017 1.22046 0.96396 0.99572 0.88557 0.85980 1.20741 0.79704 0.84296 0.84953 1.90659 1.38748 1.27660 1.86977 1.45992 1.53529 1.32421 1.05207 1.21238 0.98473 0.95855 0.82448 1.22530 0.97045 0.99413 0.93005 0.90193 1.23345 0.96891 1.02058 0.95131 1.21328 0.95407 0.87012 0.92567 0.92641 1.42305 1.41870 1.06815 1.46238 1.20412 1.12680 0.97360 1.15855 0.91506 1.27180 1.05417 0.91671 1.05279 1.70995 1.24380 1.32732 1.34238 0.82633 0.73155 0.75493 0.73543 1.20279 1.20479 1.22015 1.23720 0.95798 1.00929 0.98530 1.61553 1.59969 1.04037 1.00233 1.22598 0.97944 0.87961 1.04087 1.23437 0.96457 0.94740 0.97222 1.20986 0.83158 0.83414 0.72869 1.93084 1.95089 1.71125 1.58039 1.93187 1.95864 1.82212 1.45336 1.93187 1.42850 1.85068 1.95818 0.89149 0.90264 0.91043 0.75465 0.91282 0.92234 0.87522 0.92540 0.80691 0.94537 0.93328 0.88858 0.91508 0.89385 0.92671 0.86903 0.83620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.97 8.34 71.98 0.60 -1.37 16 2 C 0.05 0.76 2.62 44.17 0.12 0.87 16 3 H 0.12 2.03 5.37 -2.39 -0.01 2.02 16 4 C 0.52 12.08 6.91 87.66 0.61 12.68 16 5 O -0.56 -17.26 14.43 -3.03 -0.04 -17.31 16 6 N -0.72 -15.57 5.45 -463.05 -2.52 -18.10 16 7 C 0.14 3.47 5.51 86.38 0.48 3.95 16 8 C -0.10 -2.78 3.65 -10.17 -0.04 -2.82 16 9 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 10 C -0.14 -4.06 7.38 31.12 0.23 -3.83 16 11 C 0.15 5.56 4.55 45.52 0.21 5.77 16 12 H 0.06 2.16 8.11 -2.38 -0.02 2.14 16 13 N -0.73 -35.89 5.31 -320.44 -1.70 -37.59 16 14 C -0.33 -18.34 9.97 84.03 0.84 -17.50 16 15 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 16 C -0.10 -5.98 5.50 84.86 0.47 -5.51 16 17 N -0.98 -60.34 13.70 21.65 0.30 -60.04 16 18 Si 1.13 51.17 29.92 68.60 2.05 53.23 16 19 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 20 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 C -0.15 -4.59 7.45 31.21 0.23 -4.36 16 23 N -0.53 -8.51 4.15 -901.47 -3.75 -12.25 16 24 C 0.02 0.28 8.73 127.69 1.11 1.40 16 25 C 0.01 0.11 5.01 86.30 0.43 0.54 16 26 C 0.45 7.01 3.28 71.98 0.24 7.25 16 27 F -0.19 -3.45 14.69 44.97 0.66 -2.79 16 28 F -0.18 -2.79 17.32 44.97 0.78 -2.02 16 29 F -0.19 -3.95 17.12 44.97 0.77 -3.18 16 30 H 0.09 0.60 6.52 -2.39 -0.02 0.59 16 31 H 0.08 0.85 7.56 -2.39 -0.02 0.83 16 32 H 0.07 0.81 6.23 -2.39 -0.01 0.80 16 33 H 0.41 7.53 7.89 -92.71 -0.73 6.79 16 34 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.11 2.65 8.10 -2.39 -0.02 2.63 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.36 18.45 6.73 -92.71 -0.62 17.83 16 39 H 0.24 15.00 6.77 -92.71 -0.63 14.37 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.09 2.44 7.90 -2.39 -0.02 2.43 16 42 H 0.07 1.36 6.09 -2.38 -0.01 1.35 16 43 H 0.09 0.89 7.87 -2.39 -0.02 0.88 16 44 H 0.05 0.54 5.95 -2.39 -0.01 0.52 16 45 H 0.11 0.57 6.24 -2.39 -0.01 0.55 16 46 H 0.15 0.75 7.73 -2.38 -0.02 0.74 16 Total: -1.00 -72.77 375.61 1.88 -70.89 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.18 Total: 32.10 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.52 Total: -2.95 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -7.67 Total: -127.98 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.04 Total: -17.31 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 2.21 Total: -7.98 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.23 kcal Total: -72.77 1.88 -70.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479390708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.994 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds