Wall clock time and date at job start Tue Mar 31 2020 21:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47336 * 2 1 4 4 C 1.34776 * 119.99996 * 273.75713 * 3 2 1 5 5 O 1.21279 * 120.00110 * 184.97594 * 4 3 2 6 6 C 1.50696 * 120.00275 * 4.97098 * 4 3 2 7 7 C 1.53000 * 109.47457 * 180.02562 * 6 4 3 8 8 N 1.46504 * 109.47152 * 180.02562 * 7 6 4 9 9 C 1.33880 * 122.76091 * 269.71171 * 8 7 6 10 10 O 1.21224 * 125.39527 * 359.97438 * 9 8 7 11 11 C 1.51308 * 109.20876 * 179.84229 * 9 8 7 12 12 C 1.54234 * 103.55537 * 0.38259 * 11 9 8 13 13 C 1.33875 * 122.76235 * 89.99465 * 8 7 6 14 14 O 1.21223 * 125.40097 * 359.97438 * 13 8 7 15 15 C 1.46505 * 120.00399 * 93.75110 * 3 2 1 16 16 H 1.08990 * 110.89045 * 181.35147 * 15 3 2 17 17 C 1.55157 * 111.00302 * 305.23593 * 15 3 2 18 18 C 1.54331 * 102.94304 * 82.56923 * 17 15 3 19 19 N 1.47017 * 107.26927 * 22.18854 * 18 17 15 20 20 C 1.36940 * 125.64575 * 180.79267 * 19 18 17 21 21 H 1.08001 * 119.99835 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00209 * 0.02755 * 20 19 18 23 23 N 1.31624 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00300 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47372 * 119.99940 * 24 22 20 27 27 H 1.48500 * 109.47364 * 240.00023 * 24 22 20 28 28 C 1.47422 * 108.70783 * 1.06363 * 19 18 17 29 29 H 1.08994 * 109.47361 * 177.89325 * 1 2 3 30 30 H 1.09006 * 109.46967 * 297.88689 * 1 2 3 31 31 H 1.09000 * 109.47302 * 57.88796 * 1 2 3 32 32 H 1.08997 * 109.47068 * 240.00174 * 2 1 3 33 33 H 1.08998 * 109.47656 * 120.00125 * 2 1 3 34 34 H 1.09008 * 109.46991 * 300.00704 * 6 4 3 35 35 H 1.09006 * 109.46924 * 59.99755 * 6 4 3 36 36 H 1.09000 * 109.47087 * 299.99609 * 7 6 4 37 37 H 1.08997 * 109.47225 * 60.00387 * 7 6 4 38 38 H 1.09002 * 110.79903 * 241.77863 * 11 9 8 39 39 H 1.08996 * 110.42288 * 118.80740 * 11 9 8 40 40 H 1.09002 * 110.60895 * 241.26372 * 12 11 9 41 41 H 1.08999 * 110.60440 * 118.28849 * 12 11 9 42 42 H 1.09004 * 110.72228 * 324.20725 * 17 15 3 43 43 H 1.08998 * 110.72098 * 200.93266 * 17 15 3 44 44 H 1.09003 * 109.87902 * 262.77560 * 18 17 15 45 45 H 1.09000 * 109.88345 * 141.61107 * 18 17 15 46 46 H 0.96998 * 119.99587 * 179.97438 * 23 22 20 47 47 H 1.09003 * 110.36868 * 94.70098 * 28 19 18 48 48 H 1.08999 * 110.37127 * 217.02822 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1709 2.0420 -1.1647 5 8 2.6596 3.1519 -1.1727 6 6 1.7343 1.4018 -2.4571 7 6 2.0169 2.3554 -3.6197 8 7 1.5919 1.7331 -4.8761 9 6 2.4070 0.9776 -5.6225 10 8 3.5627 0.7219 -5.3609 11 6 1.6562 0.4907 -6.8426 12 6 0.2538 1.1104 -6.6752 13 6 0.3580 1.8778 -5.3751 14 8 -0.5344 2.5210 -4.8660 15 6 2.3408 2.0442 1.2660 16 1 2.6663 3.0703 1.0954 17 6 1.1347 1.9980 2.2410 18 6 1.2575 0.5971 2.8766 19 7 2.6565 0.1708 2.7265 20 6 3.1760 -1.0245 3.1467 21 1 4.2217 -1.2439 2.9893 22 6 2.3586 -1.9541 3.7747 23 7 1.0841 -1.6869 3.9660 24 14 3.0671 -3.5849 4.3473 25 1 4.5136 -3.6399 4.0159 26 1 2.8913 -3.7126 5.8164 27 1 2.3599 -4.6986 3.6655 28 6 3.4089 1.2458 2.0545 29 1 -0.3634 -1.0269 -0.0378 30 1 -0.3633 0.4807 0.9084 31 1 -0.3634 0.5463 -0.8704 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2853 0.4733 -2.6070 35 1 0.6664 1.1875 -2.4138 36 1 1.4661 3.2840 -3.4701 37 1 3.0848 2.5692 -3.6629 38 1 1.5960 -0.5976 -6.8512 39 1 2.1312 0.8569 -7.7527 40 1 -0.5040 0.3304 -6.6005 41 1 0.0313 1.7850 -7.5019 42 1 0.1950 2.0936 1.6968 43 1 1.2226 2.7751 3.0003 44 1 0.5994 -0.1027 2.3614 45 1 0.9960 0.6454 3.9337 46 1 0.5129 -2.3367 4.4045 47 1 3.8943 1.8865 2.7907 48 1 4.1468 0.8234 1.3725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494900708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:32 Heat of formation + Delta-G solvation = -60.660009 kcal Electronic energy + Delta-G solvation = -30686.741600 eV Core-core repulsion = 26550.345972 eV Total energy + Delta-G solvation = -4136.395628 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.18205 -40.01336 -38.85616 -37.66041 -36.17140 -34.65510 -34.40268 -32.42986 -30.69722 -30.28186 -29.24323 -27.05256 -26.55510 -25.01132 -24.34635 -22.75195 -22.69595 -20.71433 -20.10581 -19.67881 -18.52101 -17.77741 -17.27146 -16.98744 -16.78129 -16.68707 -15.75430 -15.40086 -14.85428 -14.72520 -14.53872 -14.43608 -14.27115 -14.02334 -13.82606 -13.71357 -13.32749 -13.15701 -12.94062 -12.49698 -12.32099 -12.10185 -11.94227 -11.89256 -11.82999 -11.43224 -11.20611 -11.00791 -10.95453 -10.90870 -10.74995 -10.45893 -10.34301 -10.24966 -10.13777 -10.06809 -9.91595 -9.69136 -9.36823 -8.70291 -8.23105 -6.85585 -5.78469 -3.12470 1.17730 2.16146 2.36809 2.83891 3.34666 3.36660 3.42350 3.43718 3.68351 3.82028 4.00122 4.38788 4.44222 4.65848 4.75989 4.78616 4.99747 5.12650 5.14387 5.22119 5.24352 5.35745 5.42143 5.45516 5.48366 5.54969 5.69513 5.77846 5.79358 5.87436 5.93405 6.18802 6.19678 6.33010 6.47360 6.52152 6.53026 6.61379 6.71043 6.79535 6.98667 7.11568 7.44164 7.51678 7.56225 7.77178 7.83523 8.17955 8.43213 9.15176 9.74400 10.39903 11.32353 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.002930 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.673051 B = 9553.988788 C =10056.990439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.082 3.918 3 N -0.581 5.581 4 C 0.519 3.481 5 O -0.556 6.556 6 C -0.155 4.155 7 C 0.115 3.885 8 N -0.575 5.575 9 C 0.523 3.477 10 O -0.476 6.476 11 C -0.157 4.157 12 C -0.157 4.157 13 C 0.524 3.476 14 O -0.478 6.478 15 C 0.123 3.877 16 H 0.099 0.901 17 C -0.158 4.158 18 C 0.167 3.833 19 N -0.602 5.602 20 C -0.230 4.230 21 H 0.078 0.922 22 C -0.005 4.005 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.124 3.876 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.138 0.862 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.252 0.748 47 H 0.031 0.969 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 4.283 -21.315 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.041 4.041 3 N -0.311 5.311 4 C 0.307 3.693 5 O -0.436 6.436 6 C -0.196 4.196 7 C -0.006 4.006 8 N -0.318 5.318 9 C 0.312 3.688 10 O -0.347 6.347 11 C -0.197 4.197 12 C -0.197 4.197 13 C 0.312 3.688 14 O -0.349 6.349 15 C 0.019 3.981 16 H 0.117 0.883 17 C -0.197 4.197 18 C 0.043 3.957 19 N -0.329 5.329 20 C -0.358 4.358 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.002 4.002 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.078 0.922 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.048 0.952 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.124 4.877 -20.741 21.534 hybrid contribution 0.222 -1.021 0.516 1.166 sum -2.901 3.855 -20.225 20.793 Atomic orbital electron populations 1.22329 0.96338 1.02054 1.01888 1.22124 0.94259 0.81839 1.05872 1.47816 1.63580 1.14443 1.05299 1.20174 0.78446 0.85625 0.85078 1.90658 1.45454 1.20310 1.87144 1.21991 1.04129 1.00544 0.92912 1.21526 1.03213 0.96182 0.79652 1.46848 1.14445 1.46989 1.23517 1.20880 0.86001 0.76897 0.85029 1.90816 1.15308 1.55109 1.73499 1.22486 0.94717 1.04419 0.98059 1.22489 0.98846 1.01745 0.96600 1.20877 0.81055 0.80034 0.86794 1.90809 1.40756 1.38822 1.64478 1.22247 0.96606 0.96728 0.82511 0.88267 1.23313 0.97265 1.01125 0.98036 1.21396 0.86392 0.89104 0.98805 1.44616 1.05288 1.14588 1.68453 1.19092 0.94201 0.90657 1.31893 0.90407 1.24777 0.95853 0.98669 1.00887 1.69973 1.03940 1.34972 1.47725 0.86076 0.78071 0.83595 0.78208 1.20549 1.21801 1.21756 1.21914 0.93504 0.90893 0.93937 0.91806 0.90962 0.94087 0.92303 0.84442 0.88480 0.88290 0.88003 0.87957 0.85999 0.86179 0.86042 0.86154 0.91628 0.91434 0.92154 0.94057 0.93773 0.95184 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 9.25 37.16 0.34 -2.27 16 2 C 0.08 1.39 4.90 -4.04 -0.02 1.37 16 3 N -0.58 -10.06 2.52 -163.68 -0.41 -10.47 16 4 C 0.52 8.63 7.64 -10.99 -0.08 8.55 16 5 O -0.56 -10.58 15.37 5.56 0.09 -10.49 16 6 C -0.16 -2.03 4.69 -27.88 -0.13 -2.16 16 7 C 0.12 1.41 4.85 -4.04 -0.02 1.39 16 8 N -0.57 -5.68 2.55 -115.34 -0.29 -5.97 16 9 C 0.52 4.77 8.08 -11.09 -0.09 4.68 16 10 O -0.48 -6.21 17.47 5.61 0.10 -6.11 16 11 C -0.16 -0.61 7.03 -26.94 -0.19 -0.80 16 12 C -0.16 -0.60 7.03 -26.93 -0.19 -0.79 16 13 C 0.52 4.72 8.08 -11.08 -0.09 4.63 16 14 O -0.48 -6.10 17.48 5.61 0.10 -6.01 16 15 C 0.12 2.28 3.66 -65.78 -0.24 2.04 16 16 H 0.10 1.82 7.03 -51.93 -0.36 1.46 16 17 C -0.16 -2.94 5.98 -24.89 -0.15 -3.08 16 18 C 0.17 3.79 4.14 -3.06 -0.01 3.77 16 19 N -0.60 -14.36 1.92 -170.07 -0.33 -14.69 16 20 C -0.23 -6.06 9.96 -15.06 -0.15 -6.21 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -25.33 10.31 55.49 0.57 -24.76 16 24 Si 0.91 21.31 29.55 -169.99 -5.02 16.29 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.12 2.57 6.58 -2.53 -0.02 2.55 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.23 4.58 -51.93 -0.24 0.99 16 31 H 0.04 0.56 6.51 -51.93 -0.34 0.23 16 32 H 0.06 0.89 6.64 -51.93 -0.34 0.55 16 33 H 0.14 2.91 4.38 -51.93 -0.23 2.68 16 34 H 0.10 1.23 7.27 -51.92 -0.38 0.85 16 35 H 0.10 1.24 6.52 -51.93 -0.34 0.90 16 36 H 0.10 1.32 7.79 -51.93 -0.40 0.92 16 37 H 0.10 1.34 7.78 -51.93 -0.40 0.94 16 38 H 0.12 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.12 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.07 1.15 6.60 -51.93 -0.34 0.80 16 43 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.43 4.42 -51.93 -0.23 1.20 16 45 H 0.04 1.07 7.49 -51.93 -0.39 0.68 16 46 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 47 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -32.93 374.14 -7.63 -40.56 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.93 Total: 2.60 kcal Atomic # 6 Polarization: 14.56 SS G_CDS: -1.13 Total: 13.43 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.46 Total: -55.90 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.28 Total: -22.61 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.93 -7.63 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494900708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.102 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds