Wall clock time and date at job start Tue Mar 31 2020 21:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47336 * 2 1 4 4 C 1.34776 * 119.99996 * 273.75713 * 3 2 1 5 5 O 1.21279 * 120.00110 * 184.97594 * 4 3 2 6 6 C 1.50696 * 120.00275 * 4.97098 * 4 3 2 7 7 C 1.53000 * 109.47457 * 180.02562 * 6 4 3 8 8 N 1.46504 * 109.47152 * 180.02562 * 7 6 4 9 9 C 1.33880 * 122.76091 * 269.71171 * 8 7 6 10 10 O 1.21224 * 125.39527 * 359.97438 * 9 8 7 11 11 C 1.51308 * 109.20876 * 179.84229 * 9 8 7 12 12 C 1.54234 * 103.55537 * 0.38259 * 11 9 8 13 13 C 1.33875 * 122.76235 * 89.99465 * 8 7 6 14 14 O 1.21223 * 125.40097 * 359.97438 * 13 8 7 15 15 C 1.46505 * 120.00399 * 93.75110 * 3 2 1 16 16 H 1.08990 * 110.89045 * 181.35147 * 15 3 2 17 17 C 1.55157 * 111.00302 * 305.23593 * 15 3 2 18 18 C 1.54331 * 102.94304 * 82.56923 * 17 15 3 19 19 N 1.47017 * 107.26927 * 22.18854 * 18 17 15 20 20 C 1.36940 * 125.64575 * 180.79267 * 19 18 17 21 21 H 1.08001 * 119.99835 * 180.02562 * 20 19 18 22 22 C 1.38807 * 120.00209 * 0.02755 * 20 19 18 23 23 N 1.31624 * 119.99750 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00300 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47209 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.47372 * 119.99940 * 24 22 20 27 27 H 1.48500 * 109.47364 * 240.00023 * 24 22 20 28 28 C 1.47422 * 108.70783 * 1.06363 * 19 18 17 29 29 H 1.08994 * 109.47361 * 177.89325 * 1 2 3 30 30 H 1.09006 * 109.46967 * 297.88689 * 1 2 3 31 31 H 1.09000 * 109.47302 * 57.88796 * 1 2 3 32 32 H 1.08997 * 109.47068 * 240.00174 * 2 1 3 33 33 H 1.08998 * 109.47656 * 120.00125 * 2 1 3 34 34 H 1.09008 * 109.46991 * 300.00704 * 6 4 3 35 35 H 1.09006 * 109.46924 * 59.99755 * 6 4 3 36 36 H 1.09000 * 109.47087 * 299.99609 * 7 6 4 37 37 H 1.08997 * 109.47225 * 60.00387 * 7 6 4 38 38 H 1.09002 * 110.79903 * 241.77863 * 11 9 8 39 39 H 1.08996 * 110.42288 * 118.80740 * 11 9 8 40 40 H 1.09002 * 110.60895 * 241.26372 * 12 11 9 41 41 H 1.08999 * 110.60440 * 118.28849 * 12 11 9 42 42 H 1.09004 * 110.72228 * 324.20725 * 17 15 3 43 43 H 1.08998 * 110.72098 * 200.93266 * 17 15 3 44 44 H 1.09003 * 109.87902 * 262.77560 * 18 17 15 45 45 H 1.09000 * 109.88345 * 141.61107 * 18 17 15 46 46 H 0.96998 * 119.99587 * 179.97438 * 23 22 20 47 47 H 1.09003 * 110.36868 * 94.70098 * 28 19 18 48 48 H 1.08999 * 110.37127 * 217.02822 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1709 2.0420 -1.1647 5 8 2.6596 3.1519 -1.1727 6 6 1.7343 1.4018 -2.4571 7 6 2.0169 2.3554 -3.6197 8 7 1.5919 1.7331 -4.8761 9 6 2.4070 0.9776 -5.6225 10 8 3.5627 0.7219 -5.3609 11 6 1.6562 0.4907 -6.8426 12 6 0.2538 1.1104 -6.6752 13 6 0.3580 1.8778 -5.3751 14 8 -0.5344 2.5210 -4.8660 15 6 2.3408 2.0442 1.2660 16 1 2.6663 3.0703 1.0954 17 6 1.1347 1.9980 2.2410 18 6 1.2575 0.5971 2.8766 19 7 2.6565 0.1708 2.7265 20 6 3.1760 -1.0245 3.1467 21 1 4.2217 -1.2439 2.9893 22 6 2.3586 -1.9541 3.7747 23 7 1.0841 -1.6869 3.9660 24 14 3.0671 -3.5849 4.3473 25 1 4.5136 -3.6399 4.0159 26 1 2.8913 -3.7126 5.8164 27 1 2.3599 -4.6986 3.6655 28 6 3.4089 1.2458 2.0545 29 1 -0.3634 -1.0269 -0.0378 30 1 -0.3633 0.4807 0.9084 31 1 -0.3634 0.5463 -0.8704 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2853 0.4733 -2.6070 35 1 0.6664 1.1875 -2.4138 36 1 1.4661 3.2840 -3.4701 37 1 3.0848 2.5692 -3.6629 38 1 1.5960 -0.5976 -6.8512 39 1 2.1312 0.8569 -7.7527 40 1 -0.5040 0.3304 -6.6005 41 1 0.0313 1.7850 -7.5019 42 1 0.1950 2.0936 1.6968 43 1 1.2226 2.7751 3.0003 44 1 0.5994 -0.1027 2.3614 45 1 0.9960 0.6454 3.9337 46 1 0.5129 -2.3367 4.4045 47 1 3.8943 1.8865 2.7907 48 1 4.1468 0.8234 1.3725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494900708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:31 Heat of formation + Delta-G solvation = -81.207522 kcal Electronic energy + Delta-G solvation = -30687.632607 eV Core-core repulsion = 26550.345972 eV Total energy + Delta-G solvation = -4137.286635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.183 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.88877 -41.44180 -39.64710 -39.23159 -36.99308 -36.21973 -35.19390 -34.18607 -31.94296 -31.52263 -30.94556 -28.67333 -27.08027 -26.57963 -25.74589 -24.10665 -23.28116 -22.15167 -21.92573 -20.44991 -19.91565 -18.90942 -18.81051 -18.03735 -17.75701 -17.53132 -17.07932 -16.68972 -16.61290 -15.79527 -15.67093 -15.55974 -15.28922 -15.12006 -14.91179 -14.77432 -14.52323 -14.33006 -13.96505 -13.80361 -13.69617 -13.51463 -13.39452 -13.38044 -12.90474 -12.86436 -12.61344 -12.54501 -12.20644 -12.08380 -12.06194 -11.98257 -11.79934 -11.71742 -11.63586 -11.52141 -11.07480 -11.03824 -10.74593 -10.68611 -9.73235 -8.79394 -7.82352 -5.17192 0.50421 1.40754 1.47348 1.48844 1.49943 1.58178 1.69893 2.04726 2.50360 3.23350 3.28982 3.36804 3.44100 3.65026 3.66716 3.68915 3.78190 3.88525 4.00414 4.05787 4.22812 4.27780 4.28641 4.34081 4.42298 4.49022 4.59615 4.65249 4.71126 4.78602 4.81741 4.85010 4.90967 4.94669 4.96533 4.97929 5.00547 5.25878 5.36493 5.49667 5.64201 5.69623 5.82865 5.84162 6.21675 6.33457 6.44358 6.73069 7.06012 7.13165 7.77361 8.42243 9.26866 Molecular weight = 337.18amu Principal moments of inertia in cm(-1) A = 0.016082 B = 0.002930 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.673051 B = 9553.988788 C =10056.990439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.087 3.913 3 N -0.583 5.583 4 C 0.518 3.482 5 O -0.581 6.581 6 C -0.142 4.142 7 C 0.119 3.881 8 N -0.579 5.579 9 C 0.517 3.483 10 O -0.524 6.524 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.518 3.482 14 O -0.522 6.522 15 C 0.133 3.867 16 H 0.105 0.895 17 C -0.144 4.144 18 C 0.179 3.821 19 N -0.614 5.614 20 C -0.239 4.239 21 H 0.076 0.924 22 C -0.053 4.053 23 N -0.941 5.941 24 Si 0.970 3.030 25 H -0.272 1.272 26 H -0.297 1.297 27 H -0.290 1.290 28 C 0.124 3.876 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.002 0.998 46 H 0.247 0.753 47 H 0.034 0.966 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.075 3.576 -24.252 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.035 4.035 3 N -0.314 5.314 4 C 0.307 3.693 5 O -0.462 6.462 6 C -0.182 4.182 7 C -0.004 4.004 8 N -0.322 5.322 9 C 0.309 3.691 10 O -0.398 6.398 11 C -0.179 4.179 12 C -0.178 4.178 13 C 0.310 3.690 14 O -0.396 6.396 15 C 0.028 3.972 16 H 0.123 0.877 17 C -0.182 4.182 18 C 0.055 3.945 19 N -0.341 5.341 20 C -0.368 4.368 21 H 0.094 0.906 22 C -0.247 4.247 23 N -0.589 5.589 24 Si 0.800 3.200 25 H -0.197 1.197 26 H -0.224 1.224 27 H -0.216 1.216 28 C -0.002 4.002 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.165 0.835 39 H 0.165 0.835 40 H 0.165 0.835 41 H 0.166 0.834 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.021 0.979 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.729 4.170 -23.720 24.371 hybrid contribution 0.464 -0.754 1.421 1.674 sum -3.266 3.416 -22.299 22.794 Atomic orbital electron populations 1.22217 0.95040 1.02507 1.01914 1.21985 0.95249 0.81388 1.04922 1.47858 1.63727 1.14595 1.05197 1.20711 0.77601 0.85280 0.85712 1.90645 1.46503 1.21545 1.87520 1.21906 1.04605 1.00539 0.91162 1.21252 1.02199 0.95885 0.81057 1.47051 1.15395 1.47042 1.22717 1.21881 0.85462 0.75719 0.86038 1.90796 1.17430 1.56766 1.74803 1.22616 0.93602 1.05754 0.95898 1.22620 0.99420 1.01973 0.93823 1.21859 0.79766 0.79344 0.88047 1.90790 1.41871 1.40904 1.66043 1.22078 0.95605 0.96619 0.82918 0.87685 1.23179 0.98032 0.98832 0.98202 1.21158 0.85700 0.91147 0.96525 1.44746 1.06105 1.14681 1.68524 1.19327 0.94218 0.91734 1.31479 0.90631 1.25446 0.96246 1.01490 1.01483 1.70150 1.04792 1.35564 1.48418 0.85137 0.77773 0.80086 0.77050 1.19693 1.22436 1.21646 1.21983 0.93877 0.90358 0.93958 0.91334 0.92686 0.91978 0.90297 0.88243 0.87725 0.87201 0.89181 0.89426 0.83523 0.83467 0.83505 0.83392 0.90216 0.90174 0.93386 0.97938 0.94371 0.94789 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.78 9.25 71.98 0.67 -4.12 16 2 C 0.09 2.92 4.90 86.38 0.42 3.35 16 3 N -0.58 -19.90 2.52 -790.15 -2.00 -21.90 16 4 C 0.52 16.93 7.64 87.66 0.67 17.60 16 5 O -0.58 -22.06 15.37 -3.03 -0.05 -22.11 16 6 C -0.14 -3.58 4.69 29.85 0.14 -3.44 16 7 C 0.12 2.89 4.85 86.38 0.42 3.31 16 8 N -0.58 -10.67 2.55 -756.66 -1.93 -12.60 16 9 C 0.52 8.44 8.08 87.99 0.71 9.15 16 10 O -0.52 -13.30 17.47 -2.86 -0.05 -13.35 16 11 C -0.14 -0.47 7.03 30.46 0.21 -0.25 16 12 C -0.14 -0.44 7.03 30.46 0.21 -0.22 16 13 C 0.52 8.21 8.08 88.00 0.71 8.92 16 14 O -0.52 -12.75 17.48 -2.85 -0.05 -12.80 16 15 C 0.13 4.86 3.66 46.38 0.17 5.03 16 16 H 0.11 3.79 7.03 -2.39 -0.02 3.77 16 17 C -0.14 -5.29 5.98 31.79 0.19 -5.10 16 18 C 0.18 8.30 4.14 86.73 0.36 8.66 16 19 N -0.61 -29.84 1.92 -691.98 -1.33 -31.18 16 20 C -0.24 -12.76 9.96 84.03 0.84 -11.92 16 21 H 0.08 3.98 7.83 -2.91 -0.02 3.95 16 22 C -0.05 -2.84 5.49 84.86 0.47 -2.38 16 23 N -0.94 -53.08 10.31 21.65 0.22 -52.86 16 24 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.12 5.18 6.58 86.86 0.57 5.75 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.85 4.58 -2.38 -0.01 1.84 16 31 H 0.06 1.59 6.51 -2.39 -0.02 1.57 16 32 H 0.08 2.30 6.64 -2.39 -0.02 2.28 16 33 H 0.10 4.25 4.38 -2.39 -0.01 4.24 16 34 H 0.10 2.51 7.27 -2.38 -0.02 2.50 16 35 H 0.11 2.56 6.52 -2.38 -0.02 2.54 16 36 H 0.09 2.38 7.79 -2.39 -0.02 2.37 16 37 H 0.09 2.37 7.78 -2.39 -0.02 2.35 16 38 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.15 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.15 -0.22 8.14 -2.39 -0.02 -0.24 16 42 H 0.08 2.73 6.60 -2.38 -0.02 2.71 16 43 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 44 H 0.05 2.34 4.42 -2.39 -0.01 2.33 16 45 H 0.00 0.13 7.49 -2.39 -0.02 0.11 16 46 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 47 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -74.96 374.14 4.59 -70.37 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.99 Total: 15.80 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 6.76 Total: 34.32 kcal Atomic # 7 Polarization: -113.50 SS G_CDS: -5.04 Total: -118.53 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -0.15 Total: -48.26 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -74.96 4.59 -70.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494900708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.842 kcal (2) G-P(sol) polarization free energy of solvation -74.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds