Wall clock time and date at job start Tue Mar 31 2020 19:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47034 * 2 1 4 4 N 1.29948 * 126.28362 * 269.97528 * 3 2 1 5 5 O 1.21308 * 110.24507 * 179.72412 * 4 3 2 6 6 C 1.33635 * 109.81107 * 0.46582 * 5 4 3 7 7 C 1.50707 * 126.54790 * 179.80125 * 6 5 4 8 8 H 1.09000 * 109.46880 * 194.68797 * 7 6 5 9 9 C 1.53001 * 109.47079 * 74.69142 * 7 6 5 10 10 N 1.46896 * 109.47077 * 314.68896 * 7 6 5 11 11 C 1.46961 * 110.99735 * 179.97438 * 10 7 6 12 12 C 1.53059 * 109.36302 * 183.18721 * 11 10 7 13 13 N 1.46952 * 109.36370 * 301.60193 * 12 11 10 14 14 C 1.46906 * 110.99889 * 183.18679 * 13 12 11 15 15 C 1.50701 * 109.46965 * 170.00017 * 14 13 12 16 16 O 1.21289 * 120.00042 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00007 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99839 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99636 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47328 * 90.00117 * 22 20 18 24 24 H 1.48507 * 109.46658 * 209.99905 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99218 * 22 20 18 26 26 C 1.46961 * 110.88410 * 59.32054 * 13 12 11 27 27 C 1.46955 * 111.00246 * 303.79973 * 10 7 6 28 28 N 1.31124 * 106.90084 * 359.53825 * 6 5 4 29 29 H 1.08999 * 109.46921 * 60.00900 * 1 2 3 30 30 H 1.08999 * 109.46504 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47398 * 300.00084 * 1 2 3 32 32 H 1.08999 * 109.47398 * 239.99916 * 2 1 3 33 33 H 1.09005 * 109.47043 * 119.99506 * 2 1 3 34 34 H 1.09000 * 109.46983 * 299.99592 * 9 7 6 35 35 H 1.09002 * 109.47195 * 59.99859 * 9 7 6 36 36 H 1.09000 * 109.47184 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.48904 * 63.22353 * 11 10 7 38 38 H 1.08989 * 109.49349 * 303.15552 * 11 10 7 39 39 H 1.08999 * 109.48651 * 181.63251 * 12 11 10 40 40 H 1.08996 * 109.48556 * 61.57139 * 12 11 10 41 41 H 1.08993 * 109.47164 * 289.99960 * 14 13 12 42 42 H 1.08996 * 109.46920 * 49.99994 * 14 13 12 43 43 H 0.97001 * 120.00106 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.48904 * 60.64354 * 26 13 12 46 46 H 1.09002 * 109.49205 * 180.70887 * 26 13 12 47 47 H 1.09008 * 109.48713 * 296.78155 * 27 10 7 48 48 H 1.09002 * 109.48661 * 56.82117 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 -1.0475 5 8 2.6724 3.2468 -0.7124 6 6 2.7069 3.3279 0.6211 7 6 3.1294 4.5225 1.4369 8 1 3.3025 4.2153 2.4683 9 6 2.0263 5.5821 1.3987 10 7 4.3669 5.0837 0.8788 11 6 4.8095 6.2535 1.6504 12 6 6.0535 6.8548 0.9918 13 7 7.1119 5.8373 0.9296 14 6 8.3495 6.3985 0.3714 15 6 9.4735 5.4102 0.5480 16 8 9.2641 4.3433 1.0855 17 7 10.7114 5.7121 0.1087 18 6 11.7341 4.8134 0.2698 19 1 11.5476 3.8633 0.7484 20 6 13.0102 5.1244 -0.1835 21 7 13.9903 4.2627 -0.0295 22 14 13.3324 6.7673 -1.0119 23 1 13.7213 7.7701 0.0120 24 1 14.4311 6.6166 -1.9995 25 1 12.1010 7.2212 -1.7069 26 6 6.6693 4.6675 0.1579 27 6 5.4252 4.0661 0.8160 28 7 2.2975 2.1714 1.0840 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8531 5.8893 0.3674 35 1 1.1080 5.1657 1.8129 36 1 2.3316 6.4460 1.9892 37 1 5.0491 5.9479 2.6689 38 1 4.0135 6.9977 1.6714 39 1 6.4005 7.7052 1.5787 40 1 5.8069 7.1853 -0.0172 41 1 8.2092 6.6033 -0.6899 42 1 8.5950 7.3247 0.8909 43 1 10.8787 6.5653 -0.3214 44 1 14.8812 4.4799 -0.3457 45 1 6.4297 4.9731 -0.8606 46 1 7.4654 3.9232 0.1369 47 1 5.6719 3.7352 1.8249 48 1 5.0777 3.2157 0.2292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108867607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:16 Heat of formation + Delta-G solvation = 56.864238 kcal Electronic energy + Delta-G solvation = -29580.065918 eV Core-core repulsion = 25481.059275 eV Total energy + Delta-G solvation = -4099.006643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.76777 -39.75253 -38.31416 -36.58136 -36.15984 -34.03212 -33.70655 -32.11986 -31.65983 -31.26053 -30.44887 -28.13384 -25.75772 -25.35346 -24.72061 -23.39567 -23.29803 -22.66108 -20.69348 -19.77616 -19.36896 -18.38012 -18.25136 -17.52701 -16.48156 -16.22247 -15.87660 -15.20399 -15.06327 -14.97183 -14.93734 -14.52675 -14.47884 -14.12141 -13.90737 -13.45659 -13.34034 -13.11306 -12.89179 -12.79057 -12.64181 -12.38265 -12.27005 -12.12825 -11.91004 -11.77476 -11.65390 -11.56637 -11.51487 -11.23198 -11.21547 -11.15874 -10.82548 -10.75263 -10.59279 -10.08238 -9.97405 -9.53685 -8.72991 -8.54748 -8.18096 -7.96175 -6.30908 -3.82236 0.94817 1.99511 2.58399 3.02701 3.06886 3.12209 3.15192 3.59571 3.73566 3.88745 3.90411 4.10474 4.43192 4.56679 4.69304 4.75403 4.77632 4.82516 4.84773 5.01017 5.06620 5.20895 5.23042 5.25370 5.26365 5.37768 5.39856 5.45001 5.50226 5.52501 5.56677 5.62460 5.68573 5.72553 5.76072 5.79851 5.81213 5.85417 5.92509 6.11047 6.30453 6.60547 6.72761 7.15414 7.29043 7.58822 8.00143 8.14796 8.60432 8.95516 9.42731 9.83628 10.82207 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002333 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.123803 B =11999.958514 C =13059.629721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.033 4.033 3 C 0.168 3.832 4 N -0.386 5.386 5 O 0.094 5.906 6 C 0.197 3.803 7 C 0.174 3.826 8 H 0.090 0.910 9 C -0.147 4.147 10 N -0.535 5.535 11 C 0.059 3.941 12 C 0.056 3.944 13 N -0.518 5.518 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.560 6.560 17 N -0.591 5.591 18 C -0.304 4.304 19 H 0.119 0.881 20 C 0.040 3.960 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.057 3.943 27 C 0.061 3.939 28 N -0.481 5.481 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.050 0.950 42 H 0.091 0.909 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.035 0.965 46 H 0.109 0.891 47 H 0.053 0.947 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.778 3.513 0.907 27.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.105 4.105 4 N -0.092 5.092 5 O 0.035 5.965 6 C -0.025 4.025 7 C 0.063 3.937 8 H 0.108 0.892 9 C -0.205 4.205 10 N -0.261 5.261 11 C -0.068 4.068 12 C -0.072 4.072 13 N -0.242 5.242 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.442 6.442 17 N -0.230 5.230 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.070 4.070 27 C -0.067 4.067 28 N -0.216 5.216 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.109 0.891 43 H 0.203 0.797 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.127 0.873 47 H 0.071 0.929 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.886 2.112 0.726 26.978 hybrid contribution 0.644 1.380 -0.724 1.686 sum -26.242 3.492 0.002 26.473 Atomic orbital electron populations 1.21729 0.93336 1.02796 1.02570 1.19935 0.96726 0.85696 1.04823 1.25871 1.00579 1.00532 0.83492 1.74667 1.17549 0.92976 1.24012 1.85356 1.60141 1.26495 1.24490 1.28524 0.95542 0.96061 0.82328 1.20104 0.92327 0.87374 0.93883 0.89249 1.21950 0.96552 0.97845 1.04188 1.62298 1.03091 1.08374 1.52382 1.22245 0.96813 0.92012 0.95746 1.22177 0.90669 0.94456 0.99929 1.61748 1.02570 1.06693 1.53231 1.21863 0.90436 0.97992 0.98415 1.19658 0.83281 0.88890 0.84370 1.90522 1.82493 1.25221 1.45962 1.42217 1.08637 1.17893 1.54299 1.19418 0.86356 1.00271 1.37194 0.86299 1.25045 0.95407 0.97933 0.97854 1.69623 1.01394 1.34936 1.46202 0.86668 0.78717 0.83931 0.80044 1.19606 1.20217 1.19515 1.22298 0.96573 0.94346 0.93824 1.22193 0.90518 0.93140 1.00824 1.71880 1.18426 1.01670 1.29589 0.92374 0.91025 0.92046 0.89015 0.88546 0.90666 0.91337 0.90086 0.93126 0.89514 0.89993 0.93983 0.93197 0.89123 0.79719 0.91632 0.94707 0.87291 0.92909 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.89 37.16 0.37 -0.62 16 2 C -0.03 -0.28 6.56 -27.88 -0.18 -0.46 16 3 C 0.17 2.02 7.47 -156.37 -1.17 0.85 16 4 N -0.39 -5.18 12.16 30.90 0.38 -4.80 16 5 O 0.09 1.24 11.14 18.12 0.20 1.44 16 6 C 0.20 2.30 5.64 -13.06 -0.07 2.23 16 7 C 0.17 1.64 2.62 -68.86 -0.18 1.45 16 8 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 9 C -0.15 -0.97 8.95 37.16 0.33 -0.64 16 10 N -0.53 -5.85 4.57 -227.87 -1.04 -6.90 16 11 C 0.06 0.57 5.32 -3.76 -0.02 0.55 16 12 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 13 N -0.52 -8.03 4.45 -235.91 -1.05 -9.08 16 14 C 0.04 0.73 5.45 -4.97 -0.03 0.70 16 15 C 0.45 10.12 7.48 -10.98 -0.08 10.04 16 16 O -0.56 -14.70 13.91 5.55 0.08 -14.63 16 17 N -0.59 -13.95 5.09 -10.96 -0.06 -14.01 16 18 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 19 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 20 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 21 N -0.88 -25.76 13.96 55.50 0.77 -24.98 16 22 Si 0.88 19.31 27.74 -169.99 -4.71 14.60 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 C 0.06 0.92 5.26 -3.77 -0.02 0.90 16 27 C 0.06 0.84 5.34 -3.77 -0.02 0.82 16 28 N -0.48 -6.01 11.55 -9.87 -0.11 -6.12 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.40 6.34 -51.93 -0.33 0.07 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.59 6.14 -51.94 -0.32 0.27 16 39 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 42 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 43 H 0.37 7.67 5.76 -40.82 -0.24 7.43 16 44 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.11 2.15 5.85 -51.93 -0.30 1.84 16 47 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 48 H 0.07 0.96 6.73 -51.93 -0.35 0.61 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -33.69 384.97 -8.51 -42.20 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -7.42 Total: 7.74 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -1.34 Total: 8.74 kcal Atomic # 7 Polarization: -64.78 SS G_CDS: -1.11 Total: -65.89 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.28 Total: -13.19 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.71 Total: 14.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.69 -8.51 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108867607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.061 kcal (2) G-P(sol) polarization free energy of solvation -33.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds