Wall clock time and date at job start Tue Mar 31 2020 19:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47034 * 2 1 4 4 N 1.29948 * 126.28362 * 269.97528 * 3 2 1 5 5 O 1.21308 * 110.24507 * 179.72412 * 4 3 2 6 6 C 1.33635 * 109.81107 * 0.46582 * 5 4 3 7 7 C 1.50707 * 126.54790 * 179.80125 * 6 5 4 8 8 H 1.09000 * 109.46880 * 194.68797 * 7 6 5 9 9 C 1.53001 * 109.47079 * 74.69142 * 7 6 5 10 10 N 1.46896 * 109.47077 * 314.68896 * 7 6 5 11 11 C 1.46961 * 110.99735 * 179.97438 * 10 7 6 12 12 C 1.53059 * 109.36302 * 183.18721 * 11 10 7 13 13 N 1.46952 * 109.36370 * 301.60193 * 12 11 10 14 14 C 1.46906 * 110.99889 * 183.18679 * 13 12 11 15 15 C 1.50701 * 109.46965 * 170.00017 * 14 13 12 16 16 O 1.21289 * 120.00042 * 0.02562 * 15 14 13 17 17 N 1.34780 * 119.99669 * 180.02562 * 15 14 13 18 18 C 1.37097 * 120.00007 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99870 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00222 * 179.97438 * 18 17 15 21 21 N 1.31412 * 119.99839 * 180.02562 * 20 18 17 22 22 Si 1.86795 * 119.99636 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47328 * 90.00117 * 22 20 18 24 24 H 1.48507 * 109.46658 * 209.99905 * 22 20 18 25 25 H 1.48504 * 109.47191 * 329.99218 * 22 20 18 26 26 C 1.46961 * 110.88410 * 59.32054 * 13 12 11 27 27 C 1.46955 * 111.00246 * 303.79973 * 10 7 6 28 28 N 1.31124 * 106.90084 * 359.53825 * 6 5 4 29 29 H 1.08999 * 109.46921 * 60.00900 * 1 2 3 30 30 H 1.08999 * 109.46504 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47398 * 300.00084 * 1 2 3 32 32 H 1.08999 * 109.47398 * 239.99916 * 2 1 3 33 33 H 1.09005 * 109.47043 * 119.99506 * 2 1 3 34 34 H 1.09000 * 109.46983 * 299.99592 * 9 7 6 35 35 H 1.09002 * 109.47195 * 59.99859 * 9 7 6 36 36 H 1.09000 * 109.47184 * 179.97438 * 9 7 6 37 37 H 1.09003 * 109.48904 * 63.22353 * 11 10 7 38 38 H 1.08989 * 109.49349 * 303.15552 * 11 10 7 39 39 H 1.08999 * 109.48651 * 181.63251 * 12 11 10 40 40 H 1.08996 * 109.48556 * 61.57139 * 12 11 10 41 41 H 1.08993 * 109.47164 * 289.99960 * 14 13 12 42 42 H 1.08996 * 109.46920 * 49.99994 * 14 13 12 43 43 H 0.97001 * 120.00106 * 359.97438 * 17 15 14 44 44 H 0.96999 * 119.99726 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.48904 * 60.64354 * 26 13 12 46 46 H 1.09002 * 109.49205 * 180.70887 * 26 13 12 47 47 H 1.09008 * 109.48713 * 296.78155 * 27 10 7 48 48 H 1.09002 * 109.48661 * 56.82117 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2891 2.1457 -1.0475 5 8 2.6724 3.2468 -0.7124 6 6 2.7069 3.3279 0.6211 7 6 3.1294 4.5225 1.4369 8 1 3.3025 4.2153 2.4683 9 6 2.0263 5.5821 1.3987 10 7 4.3669 5.0837 0.8788 11 6 4.8095 6.2535 1.6504 12 6 6.0535 6.8548 0.9918 13 7 7.1119 5.8373 0.9296 14 6 8.3495 6.3985 0.3714 15 6 9.4735 5.4102 0.5480 16 8 9.2641 4.3433 1.0855 17 7 10.7114 5.7121 0.1087 18 6 11.7341 4.8134 0.2698 19 1 11.5476 3.8633 0.7484 20 6 13.0102 5.1244 -0.1835 21 7 13.9903 4.2627 -0.0295 22 14 13.3324 6.7673 -1.0119 23 1 13.7213 7.7701 0.0120 24 1 14.4311 6.6166 -1.9995 25 1 12.1010 7.2212 -1.7069 26 6 6.6693 4.6675 0.1579 27 6 5.4252 4.0661 0.8160 28 7 2.2975 2.1714 1.0840 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 1.8531 5.8893 0.3674 35 1 1.1080 5.1657 1.8129 36 1 2.3316 6.4460 1.9892 37 1 5.0491 5.9479 2.6689 38 1 4.0135 6.9977 1.6714 39 1 6.4005 7.7052 1.5787 40 1 5.8069 7.1853 -0.0172 41 1 8.2092 6.6033 -0.6899 42 1 8.5950 7.3247 0.8909 43 1 10.8787 6.5653 -0.3214 44 1 14.8812 4.4799 -0.3457 45 1 6.4297 4.9731 -0.8606 46 1 7.4654 3.9232 0.1369 47 1 5.6719 3.7352 1.8249 48 1 5.0777 3.2157 0.2292 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108867607.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:15 Heat of formation + Delta-G solvation = 28.051164 kcal Electronic energy + Delta-G solvation = -29581.315346 eV Core-core repulsion = 25481.059275 eV Total energy + Delta-G solvation = -4100.256072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.70307 -40.93129 -39.86793 -37.51095 -37.24248 -35.92248 -34.65787 -33.75752 -32.93661 -32.23053 -31.35348 -29.39443 -27.07427 -26.11200 -25.96431 -24.73372 -24.28254 -23.51833 -21.56867 -21.27483 -20.74721 -20.20525 -19.28956 -18.45311 -17.79564 -17.33809 -16.98000 -16.79651 -16.41819 -15.93483 -15.80684 -15.69984 -15.36883 -15.33604 -15.11801 -15.01531 -14.56803 -14.22772 -14.05740 -13.87361 -13.70200 -13.64864 -13.31565 -13.05487 -12.87159 -12.71439 -12.66137 -12.57533 -12.41740 -12.39282 -12.31783 -12.22673 -12.03462 -11.98919 -11.86886 -11.80105 -11.45256 -11.00161 -10.35065 -10.22694 -9.60133 -9.19885 -8.40752 -6.01362 0.02899 1.08839 1.30502 1.36189 1.44901 1.72376 1.97286 2.23602 2.28343 2.62720 2.76975 3.03124 3.14233 3.21568 3.66371 3.77311 3.88985 4.04785 4.08524 4.15466 4.17417 4.19284 4.26119 4.32477 4.33762 4.40837 4.46207 4.54472 4.62449 4.68985 4.72111 4.77958 4.81986 4.87851 4.89056 4.97361 4.98134 4.98816 5.11921 5.19734 5.25194 5.53324 5.69553 5.77789 5.93089 6.03606 6.21637 6.60853 6.89616 7.07494 7.41145 7.99002 8.77013 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002333 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.123803 B =11999.958514 C =13059.629721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.036 4.036 3 C 0.166 3.834 4 N -0.410 5.410 5 O 0.079 5.921 6 C 0.199 3.801 7 C 0.173 3.827 8 H 0.094 0.906 9 C -0.140 4.140 10 N -0.532 5.532 11 C 0.058 3.942 12 C 0.055 3.945 13 N -0.538 5.538 14 C 0.056 3.944 15 C 0.450 3.550 16 O -0.607 6.607 17 N -0.592 5.592 18 C -0.326 4.326 19 H 0.053 0.947 20 C -0.018 4.018 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.231 1.231 26 C 0.064 3.936 27 C 0.075 3.925 28 N -0.500 5.500 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.046 0.954 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.389 0.611 44 H 0.278 0.722 45 H 0.039 0.961 46 H 0.061 0.939 47 H 0.034 0.966 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.037 7.448 0.461 29.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.075 4.075 3 C -0.107 4.107 4 N -0.120 5.120 5 O 0.023 5.977 6 C -0.022 4.022 7 C 0.063 3.937 8 H 0.112 0.888 9 C -0.198 4.198 10 N -0.259 5.259 11 C -0.068 4.068 12 C -0.072 4.072 13 N -0.264 5.264 14 C -0.075 4.075 15 C 0.238 3.762 16 O -0.491 6.491 17 N -0.235 5.235 18 C -0.455 4.455 19 H 0.071 0.929 20 C -0.216 4.216 21 N -0.577 5.577 22 Si 0.786 3.214 23 H -0.179 1.179 24 H -0.202 1.202 25 H -0.155 1.155 26 C -0.064 4.064 27 C -0.054 4.054 28 N -0.235 5.235 29 H 0.069 0.931 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.064 0.936 38 H 0.145 0.855 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.225 0.775 44 H 0.088 0.912 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -29.183 6.089 0.290 29.813 hybrid contribution 1.285 0.007 -0.485 1.374 sum -27.898 6.096 -0.196 28.557 Atomic orbital electron populations 1.21692 0.91879 1.04157 1.01963 1.20170 0.97900 0.83851 1.05601 1.26539 0.99496 1.01629 0.83058 1.74649 1.18989 0.93440 1.24874 1.85313 1.60650 1.26600 1.25112 1.29077 0.94512 0.96530 0.82080 1.20363 0.92457 0.87559 0.93295 0.88847 1.21964 0.95604 0.97509 1.04685 1.62298 1.02467 1.07852 1.53262 1.22417 0.97514 0.91988 0.94909 1.22369 0.89745 0.93873 1.01237 1.61704 1.03689 1.07808 1.53153 1.21813 0.88244 0.96743 1.00652 1.20979 0.84129 0.89217 0.81904 1.90517 1.83414 1.27798 1.47411 1.42043 1.08162 1.17964 1.55286 1.18973 0.88652 0.99437 1.38420 0.92860 1.26146 0.94181 1.03296 0.98026 1.69813 1.02211 1.38096 1.47571 0.85344 0.79924 0.77167 0.78943 1.17946 1.20202 1.15451 1.22036 0.95822 0.93960 0.94577 1.21888 0.90821 0.93541 0.99137 1.71898 1.19374 1.02174 1.30011 0.93056 0.88672 0.92495 0.88280 0.87678 0.90819 0.90558 0.87579 0.93610 0.85516 0.87473 0.92896 0.90646 0.85435 0.77494 0.91210 0.94280 0.92113 0.94782 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.89 71.98 0.71 -1.03 16 2 C -0.04 -0.60 6.56 29.85 0.20 -0.40 16 3 C 0.17 4.01 7.47 138.46 1.03 5.05 16 4 N -0.41 -11.20 12.16 -60.32 -0.73 -11.94 16 5 O 0.08 2.09 11.14 74.89 0.83 2.92 16 6 C 0.20 4.60 5.64 88.38 0.50 5.09 16 7 C 0.17 2.98 2.62 44.17 0.12 3.10 16 8 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 9 C -0.14 -1.40 8.95 71.98 0.64 -0.76 16 10 N -0.53 -10.71 4.57 -874.85 -4.00 -14.71 16 11 C 0.06 0.91 5.32 86.31 0.46 1.37 16 12 C 0.05 1.02 5.61 86.31 0.48 1.50 16 13 N -0.54 -15.79 4.45 -900.28 -4.00 -19.79 16 14 C 0.06 1.70 5.45 85.56 0.47 2.17 16 15 C 0.45 20.32 7.48 87.66 0.66 20.98 16 16 O -0.61 -33.73 13.91 -3.06 -0.04 -33.78 16 17 N -0.59 -27.99 5.09 -306.98 -1.56 -29.55 16 18 C -0.33 -19.20 10.16 84.04 0.85 -18.35 16 19 H 0.05 3.76 7.39 -2.91 -0.02 3.74 16 20 C -0.02 -1.02 5.50 84.93 0.47 -0.55 16 21 N -0.94 -56.98 13.96 21.66 0.30 -56.68 16 22 Si 0.97 38.90 27.74 68.60 1.90 40.80 16 23 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 24 H -0.28 -11.12 7.11 99.48 0.71 -10.42 16 25 H -0.23 -7.81 6.52 99.48 0.65 -7.16 16 26 C 0.06 2.10 5.26 86.31 0.45 2.55 16 27 C 0.07 2.11 5.34 86.31 0.46 2.57 16 28 N -0.50 -12.51 11.55 -303.20 -3.50 -16.01 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.54 6.34 -2.39 -0.02 0.53 16 37 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 1.03 6.14 -2.39 -0.01 1.01 16 39 H 0.11 1.50 8.07 -2.39 -0.02 1.48 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 42 H 0.13 2.97 8.03 -2.39 -0.02 2.95 16 43 H 0.39 15.14 5.76 -92.71 -0.53 14.60 16 44 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 2.57 5.85 -2.39 -0.01 2.55 16 47 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 48 H 0.05 1.61 6.73 -2.39 -0.02 1.59 16 Total: -1.00 -81.93 384.97 -2.92 -84.85 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: 0.39 Total: 30.60 kcal Atomic # 6 Polarization: 15.79 SS G_CDS: 7.50 Total: 23.29 kcal Atomic # 7 Polarization: -135.19 SS G_CDS: -13.50 Total: -148.68 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: 0.79 Total: -30.85 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.80 kcal Total: -81.93 -2.92 -84.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108867607.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.900 kcal (2) G-P(sol) polarization free energy of solvation -81.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds