Wall clock time and date at job start Tue Mar 31 2020 20:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46870 * 2 1 4 4 H 1.09009 * 109.46738 * 304.99521 * 3 2 1 5 5 C 1.53000 * 109.47041 * 185.00072 * 3 2 1 6 6 N 1.46497 * 109.47319 * 64.99503 * 3 2 1 7 7 C 1.34776 * 119.99974 * 204.99753 * 6 3 2 8 8 O 1.21286 * 120.00080 * 0.02562 * 7 6 3 9 9 C 1.50702 * 120.00088 * 180.02562 * 7 6 3 10 10 H 1.09006 * 109.46938 * 300.00415 * 9 7 6 11 11 C 1.53000 * 109.47355 * 60.00023 * 9 7 6 12 12 N 1.46494 * 109.47319 * 180.02562 * 9 7 6 13 13 C 1.34780 * 120.00332 * 154.99750 * 12 9 7 14 14 O 1.21596 * 119.99507 * 0.02562 * 13 12 9 15 15 N 1.34768 * 120.00292 * 180.02562 * 13 12 9 16 16 C 1.40201 * 120.00142 * 180.02562 * 15 13 12 17 17 C 1.40396 * 125.97176 * 359.97438 * 16 15 13 18 18 C 1.35243 * 107.86896 * 179.97438 * 17 16 15 19 19 N 1.34962 * 107.85356 * 0.22585 * 18 17 16 20 20 C 1.46501 * 125.97082 * 179.76577 * 19 18 17 21 21 C 1.50703 * 109.46706 * 125.00181 * 20 19 18 22 22 H 1.07992 * 120.00189 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99721 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00333 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99825 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.46876 * 60.00164 * 25 23 21 27 27 H 1.48497 * 109.47301 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47223 * 300.00627 * 25 23 21 29 29 N 1.31202 * 125.97171 * 179.97438 * 16 15 13 30 30 H 1.09000 * 109.47139 * 300.00041 * 1 2 3 31 31 H 1.09001 * 109.46896 * 60.00648 * 1 2 3 32 32 H 1.08994 * 109.46628 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47139 * 239.99959 * 2 1 3 34 34 H 1.09001 * 109.46896 * 119.99351 * 2 1 3 35 35 H 1.09002 * 109.46644 * 299.99613 * 5 3 2 36 36 H 1.09000 * 109.47580 * 59.99722 * 5 3 2 37 37 H 1.08997 * 109.47141 * 179.97438 * 5 3 2 38 38 H 0.97001 * 120.00217 * 25.00415 * 6 3 2 39 39 H 1.08998 * 109.46592 * 59.99677 * 11 9 7 40 40 H 1.08992 * 109.47286 * 180.02562 * 11 9 7 41 41 H 1.09007 * 109.46819 * 300.00584 * 11 9 7 42 42 H 0.96998 * 120.00015 * 334.99776 * 12 9 7 43 43 H 0.96998 * 120.00056 * 359.97438 * 15 13 12 44 44 H 1.08003 * 126.06768 * 359.93842 * 17 16 15 45 45 H 1.08002 * 126.06857 * 179.97438 * 18 17 16 46 46 H 1.09000 * 109.47836 * 245.00121 * 20 19 18 47 47 H 1.08997 * 109.47518 * 5.00660 * 20 19 18 48 48 H 0.96995 * 120.00331 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8420 5 6 3.5648 1.4444 -0.1257 6 7 1.6523 2.0976 1.2517 7 6 1.5255 3.4385 1.2994 8 8 1.7319 4.1029 0.3059 9 6 1.1273 4.1124 2.5872 10 1 0.1512 3.7441 2.9033 11 6 2.1644 3.8006 3.6680 12 7 1.0583 5.5609 2.3794 13 6 0.2724 6.3185 3.1699 14 8 -0.3790 5.7997 4.0559 15 7 0.2085 7.6510 2.9783 16 6 -0.6086 8.4391 3.8010 17 6 -1.4098 7.9742 4.8560 18 6 -2.0400 9.0403 5.3995 19 7 -1.6594 10.1393 4.7147 20 6 -2.1086 11.5103 4.9693 21 6 -0.9108 12.4000 5.1814 22 1 0.0852 11.9857 5.1311 23 6 -1.0867 13.7431 5.4386 24 7 -2.2996 14.2477 5.4994 25 14 0.3979 14.8458 5.7022 26 1 1.2539 14.8219 4.4889 27 1 -0.0573 16.2356 5.9602 28 1 1.1774 14.3563 6.8675 29 7 -0.7582 9.7400 3.7195 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8901 35 1 3.9994 0.9054 0.7161 36 1 3.8533 0.9571 -1.0571 37 1 3.9281 2.4721 -0.1262 38 1 1.4870 1.5662 2.0462 39 1 3.1404 4.1688 3.3518 40 1 1.8761 4.2876 4.5994 41 1 2.2153 2.7228 3.8224 42 1 1.5782 5.9748 1.6728 43 1 0.7285 8.0649 2.2718 44 1 -1.5063 6.9473 5.1764 45 1 -2.7289 9.0159 6.2309 46 1 -2.6813 11.8698 4.1145 47 1 -2.7362 11.5275 5.8603 48 1 -2.4234 15.1925 5.6807 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894019.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:27 Heat of formation + Delta-G solvation = 7.670717 kcal Electronic energy + Delta-G solvation = -28428.215202 eV Core-core repulsion = 24327.075368 eV Total energy + Delta-G solvation = -4101.139834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93830 -40.40337 -39.36685 -37.04466 -35.37719 -34.54946 -33.37708 -32.95495 -31.29115 -30.47983 -29.77156 -29.21613 -26.60534 -25.21382 -24.19482 -23.10228 -22.03089 -21.26014 -20.69492 -20.35101 -19.87258 -18.46668 -17.27934 -16.90229 -16.55038 -16.39373 -15.84895 -15.64268 -15.31989 -14.86123 -14.59803 -14.38100 -14.27627 -14.18332 -13.94316 -13.83770 -13.75279 -13.12543 -12.80934 -12.69456 -12.65053 -12.30930 -12.28119 -12.18033 -11.98011 -11.84034 -11.72947 -11.60615 -11.21970 -11.04020 -10.84227 -10.41858 -10.22940 -10.20923 -10.07393 -9.67807 -9.57084 -9.47832 -9.32410 -8.60014 -8.06893 -7.38410 -6.21288 -4.26246 2.16761 2.20124 2.68062 2.80346 3.13440 3.27795 3.30869 3.35519 3.63574 3.86444 4.10144 4.24994 4.31357 4.40369 4.48433 4.54691 4.71967 4.82335 4.91754 5.04991 5.10810 5.13687 5.19463 5.24834 5.38642 5.43140 5.44662 5.56657 5.58492 5.70856 5.78477 5.84214 5.84335 6.03276 6.16081 6.29282 6.56518 6.60163 6.89138 7.00375 7.04745 7.14384 7.52349 7.72296 7.73894 7.85528 8.00256 8.10248 8.58234 8.69876 8.83908 9.39136 10.87322 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.026315 B = 0.001802 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.783545 B =15532.490377 C =15999.777387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.139 3.861 4 H 0.090 0.910 5 C -0.164 4.164 6 N -0.720 5.720 7 C 0.514 3.486 8 O -0.533 6.533 9 C 0.148 3.852 10 H 0.117 0.883 11 C -0.161 4.161 12 N -0.729 5.729 13 C 0.719 3.281 14 O -0.569 6.569 15 N -0.641 5.641 16 C 0.276 3.724 17 C -0.286 4.286 18 C 0.051 3.949 19 N -0.320 5.320 20 C 0.259 3.741 21 C -0.528 4.528 22 H 0.068 0.932 23 C 0.062 3.938 24 N -0.895 5.895 25 Si 0.908 3.092 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.275 1.275 29 N -0.307 5.307 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.406 0.594 43 H 0.408 0.592 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.045 0.955 47 H 0.057 0.943 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.492 -30.030 -8.339 32.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.169 4.169 3 C 0.035 3.965 4 H 0.108 0.892 5 C -0.223 4.223 6 N -0.373 5.373 7 C 0.299 3.701 8 O -0.409 6.409 9 C 0.038 3.962 10 H 0.135 0.865 11 C -0.220 4.220 12 N -0.387 5.387 13 C 0.418 3.582 14 O -0.445 6.445 15 N -0.291 5.291 16 C 0.022 3.978 17 C -0.318 4.318 18 C -0.099 4.099 19 N -0.102 5.102 20 C 0.141 3.859 21 C -0.567 4.567 22 H 0.086 0.914 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.735 3.265 26 H -0.200 1.200 27 H -0.211 1.211 28 H -0.201 1.201 29 N -0.138 5.138 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.082 0.918 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.243 0.757 43 H 0.243 0.757 44 H 0.178 0.822 45 H 0.185 0.815 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.226 -28.662 -8.833 31.100 hybrid contribution 0.938 0.158 0.253 0.984 sum 9.164 -28.504 -8.580 31.146 Atomic orbital electron populations 1.21793 0.95129 1.01887 1.02437 1.21845 0.96714 0.95179 1.03177 1.21053 0.95051 0.93131 0.87247 0.89238 1.22184 0.95171 1.02800 1.02106 1.46004 1.70732 1.06627 1.13942 1.20684 0.76618 0.82631 0.90143 1.90718 1.49754 1.63983 1.36400 1.20538 1.02344 0.80840 0.92479 0.86520 1.22182 0.98516 1.02103 0.99173 1.44692 1.49958 1.06081 1.38008 1.15483 0.80108 0.80569 0.82042 1.90859 1.47438 1.71928 1.34251 1.41319 1.47088 1.04900 1.35751 1.18769 0.95472 0.89760 0.93812 1.21499 1.07155 1.00718 1.02383 1.22551 1.01417 0.86782 0.99193 1.49055 1.30761 1.08573 1.21830 1.19728 0.96223 0.72020 0.97908 1.21228 0.92882 0.93001 1.49566 0.91351 1.24943 0.96548 0.97767 0.94820 1.69906 1.20712 1.14172 1.48598 0.86386 0.82193 0.78968 0.78933 1.19952 1.21070 1.20071 1.77336 1.14103 1.08829 1.13515 0.92429 0.92498 0.92426 0.90290 0.91279 0.92370 0.91570 0.91933 0.76324 0.91799 0.90138 0.91220 0.75715 0.75688 0.82165 0.81547 0.93752 0.92543 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.80 37.16 0.36 -0.30 16 2 C -0.13 -0.46 5.47 -26.73 -0.15 -0.61 16 3 C 0.14 0.77 2.57 -67.93 -0.17 0.59 16 4 H 0.09 0.68 7.58 -51.92 -0.39 0.29 16 5 C -0.16 -0.86 9.48 37.16 0.35 -0.51 16 6 N -0.72 -4.03 4.42 -53.80 -0.24 -4.26 16 7 C 0.51 4.48 7.19 -10.98 -0.08 4.40 16 8 O -0.53 -6.48 15.50 5.55 0.09 -6.39 16 9 C 0.15 1.31 2.98 -69.08 -0.21 1.10 16 10 H 0.12 1.06 7.58 -51.93 -0.39 0.67 16 11 C -0.16 -1.15 9.38 37.16 0.35 -0.81 16 12 N -0.73 -8.18 4.96 -59.81 -0.30 -8.47 16 13 C 0.72 10.75 8.50 -86.92 -0.74 10.01 16 14 O -0.57 -9.88 13.13 5.28 0.07 -9.81 16 15 N -0.64 -10.39 5.45 -15.51 -0.08 -10.47 16 16 C 0.28 5.67 8.11 -154.36 -1.25 4.42 16 17 C -0.29 -5.75 9.61 -39.84 -0.38 -6.13 16 18 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 19 N -0.32 -7.56 3.67 -62.56 -0.23 -7.79 16 20 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 21 C -0.53 -14.85 9.23 -34.44 -0.32 -15.17 16 22 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 25 Si 0.91 21.56 29.54 -169.99 -5.02 16.54 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 29 N -0.31 -7.20 12.42 31.44 0.39 -6.81 16 30 H 0.06 0.26 7.75 -51.93 -0.40 -0.14 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 35 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.40 1.28 8.02 -40.82 -0.33 0.95 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.30 7.57 -51.93 -0.39 -0.09 16 42 H 0.41 4.20 7.80 -40.82 -0.32 3.88 16 43 H 0.41 5.58 8.84 -40.82 -0.36 5.21 16 44 H 0.16 3.12 5.91 -52.48 -0.31 2.81 16 45 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 46 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 403.89 15.07 6.09 6.09 Total: -1.00 -34.47 403.89 -8.57 -43.04 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -7.51 Total: 7.06 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -2.56 Total: 6.06 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.28 Total: -62.59 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: 0.16 Total: -16.20 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.47 -8.57 -43.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894019.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.711 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds