Wall clock time and date at job start Tue Mar 31 2020 20:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47015 * 2 1 4 4 H 1.09010 * 109.47227 * 304.99805 * 3 2 1 5 5 C 1.53003 * 109.47207 * 185.00287 * 3 2 1 6 6 N 1.46491 * 109.47501 * 65.00050 * 3 2 1 7 7 C 1.34774 * 120.00496 * 205.00036 * 6 3 2 8 8 O 1.21280 * 120.00035 * 359.97438 * 7 6 3 9 9 C 1.50703 * 120.00317 * 179.97438 * 7 6 3 10 10 H 1.09000 * 109.47042 * 60.00151 * 9 7 6 11 11 C 1.53001 * 109.47185 * 299.99990 * 9 7 6 12 12 N 1.46503 * 109.47224 * 179.97438 * 9 7 6 13 13 C 1.34775 * 120.00069 * 205.00002 * 12 9 7 14 14 O 1.21594 * 119.99767 * 359.97438 * 13 12 9 15 15 N 1.34777 * 120.00065 * 179.97438 * 13 12 9 16 16 C 1.40192 * 120.00049 * 180.02562 * 15 13 12 17 17 C 1.40402 * 125.97032 * 359.97438 * 16 15 13 18 18 C 1.35245 * 107.86627 * 179.70432 * 17 16 15 19 19 N 1.34964 * 107.85965 * 0.26430 * 18 17 16 20 20 C 1.46495 * 125.98003 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47002 * 125.00169 * 20 19 18 22 22 H 1.07998 * 120.00063 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99758 * 180.02562 * 21 20 19 24 24 N 1.31508 * 120.00294 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99549 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47033 * 90.00087 * 25 23 21 27 27 H 1.48498 * 109.47028 * 210.00079 * 25 23 21 28 28 H 1.48493 * 109.47273 * 330.00233 * 25 23 21 29 29 N 1.31206 * 125.97560 * 180.17721 * 16 15 13 30 30 H 1.08998 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46964 * 299.99589 * 1 2 3 32 32 H 1.08998 * 109.47088 * 60.00242 * 1 2 3 33 33 H 1.09003 * 109.46968 * 239.99865 * 2 1 3 34 34 H 1.09000 * 109.47603 * 119.99796 * 2 1 3 35 35 H 1.08998 * 109.47328 * 299.99985 * 5 3 2 36 36 H 1.09006 * 109.47154 * 59.99868 * 5 3 2 37 37 H 1.08998 * 109.47102 * 179.97438 * 5 3 2 38 38 H 0.97003 * 120.00037 * 25.00355 * 6 3 2 39 39 H 1.09000 * 109.47262 * 300.00026 * 11 9 7 40 40 H 1.09001 * 109.46524 * 59.99734 * 11 9 7 41 41 H 1.08993 * 109.46948 * 179.97438 * 11 9 7 42 42 H 0.97005 * 119.99875 * 25.00307 * 12 9 7 43 43 H 0.97005 * 119.99878 * 0.02562 * 15 13 12 44 44 H 1.08002 * 126.07048 * 359.97438 * 17 16 15 45 45 H 1.08000 * 126.07435 * 180.26799 * 18 17 16 46 46 H 1.08994 * 109.47532 * 245.00383 * 20 19 18 47 47 H 1.08999 * 109.47116 * 5.01096 * 20 19 18 48 48 H 0.97002 * 120.00081 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8419 5 6 3.5648 1.4444 -0.1258 6 7 1.6525 2.0975 1.2517 7 6 1.5256 3.4384 1.2995 8 8 1.7327 4.1029 0.3063 9 6 1.1264 4.1121 2.5871 10 1 1.8647 3.8899 3.3575 11 6 -0.2440 3.5953 3.0296 12 7 1.0588 5.5608 2.3797 13 6 1.2229 6.3992 3.4221 14 8 1.4266 5.9532 4.5347 15 7 1.1612 7.7320 3.2311 16 6 1.3324 8.6041 4.3154 17 6 1.5728 8.2277 5.6465 18 6 1.6847 9.3565 6.3831 19 7 1.5163 10.4092 5.5555 20 6 1.5590 11.8220 5.9404 21 6 2.5760 12.5428 5.0934 22 1 3.1343 12.0026 4.3432 23 6 2.7937 13.8920 5.2764 24 7 2.1143 14.5497 6.1903 25 14 4.0539 14.7855 4.2261 26 1 3.3958 15.3105 3.0027 27 1 4.6327 15.9133 4.9996 28 1 5.1349 13.8431 3.8409 29 7 1.2923 9.9145 4.2642 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9995 0.9053 0.7160 36 1 3.8532 0.9570 -1.0572 37 1 3.9281 2.4720 -0.1263 38 1 1.4872 1.5661 2.0462 39 1 -0.9823 3.8175 2.2592 40 1 -0.1931 2.5175 3.1840 41 1 -0.5324 4.0822 3.9611 42 1 0.8959 5.9166 1.4920 43 1 0.9983 8.0878 2.3435 44 1 1.6580 7.2164 6.0159 45 1 1.8751 9.4066 7.4450 46 1 0.5770 12.2699 5.7887 47 1 1.8375 11.9041 6.9910 48 1 2.2677 15.4988 6.3192 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000118894021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:34 Heat of formation + Delta-G solvation = 7.612657 kcal Electronic energy + Delta-G solvation = -28440.933987 eV Core-core repulsion = 24339.791636 eV Total energy + Delta-G solvation = -4101.142352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.93751 -40.40202 -39.36590 -37.04346 -35.37895 -34.54974 -33.37642 -32.95359 -31.31451 -30.49907 -29.72398 -29.21316 -26.60637 -25.24311 -24.18939 -23.10395 -22.02903 -21.23624 -20.70969 -20.34863 -19.87265 -18.47350 -17.24945 -16.89852 -16.55605 -16.41523 -16.04738 -15.43387 -15.20296 -14.89353 -14.73493 -14.35999 -14.33895 -14.08601 -13.95764 -13.85220 -13.75419 -13.07770 -12.85956 -12.69693 -12.62735 -12.30578 -12.28345 -12.20359 -12.00812 -11.82936 -11.71192 -11.61678 -11.21812 -11.01970 -10.86819 -10.40593 -10.23054 -10.20787 -10.07135 -9.67235 -9.57460 -9.46938 -9.31794 -8.60420 -8.06830 -7.38335 -6.21441 -4.26237 2.17426 2.20009 2.66694 2.82223 3.12950 3.26290 3.31913 3.37380 3.63645 3.86460 4.10231 4.25183 4.31670 4.40499 4.47417 4.53688 4.71505 4.82138 4.92456 5.05266 5.10503 5.13702 5.18714 5.25688 5.38490 5.42128 5.42947 5.56668 5.58601 5.69506 5.80243 5.82816 5.84336 6.03895 6.15971 6.29296 6.56531 6.60160 6.89163 7.00629 7.04721 7.14189 7.52376 7.72585 7.74261 7.85533 8.00253 8.10246 8.58256 8.69973 8.84235 9.39294 10.87193 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.023176 B = 0.001846 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.861623 B =15166.892508 C =15943.468948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.140 3.860 4 H 0.089 0.911 5 C -0.166 4.166 6 N -0.720 5.720 7 C 0.514 3.486 8 O -0.532 6.532 9 C 0.147 3.853 10 H 0.117 0.883 11 C -0.161 4.161 12 N -0.729 5.729 13 C 0.719 3.281 14 O -0.569 6.569 15 N -0.641 5.641 16 C 0.276 3.724 17 C -0.286 4.286 18 C 0.051 3.949 19 N -0.320 5.320 20 C 0.259 3.741 21 C -0.528 4.528 22 H 0.069 0.931 23 C 0.062 3.938 24 N -0.895 5.895 25 Si 0.908 3.092 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.273 1.273 29 N -0.307 5.307 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.406 0.594 43 H 0.408 0.592 44 H 0.161 0.839 45 H 0.167 0.833 46 H 0.045 0.955 47 H 0.057 0.943 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -30.769 -9.561 32.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.036 3.964 4 H 0.108 0.892 5 C -0.224 4.224 6 N -0.373 5.373 7 C 0.299 3.701 8 O -0.408 6.408 9 C 0.038 3.962 10 H 0.135 0.865 11 C -0.219 4.219 12 N -0.387 5.387 13 C 0.418 3.582 14 O -0.445 6.445 15 N -0.291 5.291 16 C 0.022 3.978 17 C -0.318 4.318 18 C -0.099 4.099 19 N -0.102 5.102 20 C 0.141 3.859 21 C -0.566 4.566 22 H 0.087 0.913 23 C -0.141 4.141 24 N -0.534 5.534 25 Si 0.735 3.265 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.197 1.197 29 N -0.138 5.138 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.237 0.763 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.243 0.757 43 H 0.243 0.757 44 H 0.178 0.822 45 H 0.185 0.815 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.433 -29.364 -9.904 31.179 hybrid contribution 0.581 0.039 -0.494 0.764 sum -2.852 -29.325 -10.398 31.244 Atomic orbital electron populations 1.21786 0.95177 1.01841 1.02347 1.21845 0.96663 0.95217 1.03225 1.21046 0.95093 0.93076 0.87201 0.89243 1.22197 0.95171 1.02916 1.02133 1.46005 1.70724 1.06625 1.13962 1.20680 0.76586 0.82602 0.90222 1.90719 1.49765 1.63908 1.36436 1.20542 1.00085 0.80328 0.95264 0.86505 1.22180 0.95241 1.01228 1.03294 1.44694 1.78491 1.04493 1.11057 1.15483 0.78000 0.80307 0.84412 1.90858 1.55460 1.75945 1.22205 1.41320 1.74353 1.03290 1.10097 1.18768 1.02689 0.88874 0.87468 1.21501 1.19182 0.99927 0.91148 1.22552 1.02312 0.87251 0.97823 1.49053 1.50397 1.08032 1.02740 1.19730 0.99132 0.70245 0.96792 1.21271 1.21463 0.93913 1.19961 0.91297 1.24942 0.96538 0.97099 0.95512 1.69917 1.41029 1.09602 1.32847 0.86328 0.81105 0.79026 0.80041 1.20355 1.21010 1.19734 1.77334 1.27745 1.06483 1.02244 0.92466 0.92461 0.92527 0.90281 0.91258 0.92331 0.91550 0.91877 0.76332 0.91800 0.91233 0.90161 0.75712 0.75687 0.82164 0.81549 0.93760 0.92532 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.80 37.16 0.36 -0.20 16 2 C -0.13 -0.44 5.47 -26.73 -0.15 -0.59 16 3 C 0.14 0.78 2.57 -67.94 -0.17 0.61 16 4 H 0.09 0.66 7.58 -51.92 -0.39 0.27 16 5 C -0.17 -0.98 9.48 37.16 0.35 -0.63 16 6 N -0.72 -4.07 4.42 -53.81 -0.24 -4.31 16 7 C 0.51 4.51 7.19 -10.99 -0.08 4.43 16 8 O -0.53 -6.54 15.50 5.56 0.09 -6.45 16 9 C 0.15 1.31 2.98 -69.08 -0.21 1.10 16 10 H 0.12 1.08 7.58 -51.93 -0.39 0.69 16 11 C -0.16 -1.11 9.38 37.16 0.35 -0.77 16 12 N -0.73 -8.17 4.96 -59.81 -0.30 -8.47 16 13 C 0.72 10.75 8.50 -86.92 -0.74 10.01 16 14 O -0.57 -9.88 13.13 5.28 0.07 -9.81 16 15 N -0.64 -10.39 5.45 -15.51 -0.08 -10.47 16 16 C 0.28 5.67 8.11 -154.37 -1.25 4.42 16 17 C -0.29 -5.76 9.61 -39.83 -0.38 -6.14 16 18 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 19 N -0.32 -7.56 3.67 -62.57 -0.23 -7.79 16 20 C 0.26 6.65 6.26 -5.19 -0.03 6.62 16 21 C -0.53 -14.87 9.24 -34.44 -0.32 -15.19 16 22 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 24 N -0.90 -25.54 13.29 55.43 0.74 -24.80 16 25 Si 0.91 21.65 29.54 -169.99 -5.02 16.63 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 29 N -0.31 -7.21 12.42 31.44 0.39 -6.82 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.06 0.21 7.75 -51.93 -0.40 -0.19 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.40 1.29 8.02 -40.82 -0.33 0.97 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.29 7.56 -51.93 -0.39 -0.11 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.41 4.20 7.80 -40.82 -0.32 3.88 16 43 H 0.41 5.57 8.84 -40.82 -0.36 5.21 16 44 H 0.16 3.12 5.91 -52.49 -0.31 2.81 16 45 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 46 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 48 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 403.90 15.07 6.09 6.09 Total: -1.00 -34.59 403.90 -8.57 -43.17 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -7.51 Total: 6.91 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.56 Total: 6.12 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.28 Total: -62.66 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.16 Total: -16.26 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.59 -8.57 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000118894021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.779 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds