Wall clock time and date at job start Tue Mar 31 2020 20:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47422 * 2 1 4 4 C 1.53000 * 109.47342 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47163 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47421 * 304.99944 * 5 4 3 7 7 N 1.46498 * 109.47200 * 64.99800 * 5 4 3 8 8 C 1.34786 * 119.99953 * 59.99866 * 7 5 4 9 9 N 1.34774 * 119.99644 * 180.02562 * 8 7 5 10 10 O 1.21577 * 119.99851 * 0.02562 * 8 7 5 11 11 C 1.50704 * 109.47341 * 184.99410 * 5 4 3 12 12 O 1.21291 * 120.00259 * 260.00280 * 11 5 4 13 13 N 1.34779 * 119.99258 * 79.99937 * 11 5 4 14 14 C 1.40162 * 119.99437 * 180.02562 * 13 11 5 15 15 C 1.40415 * 125.97631 * 0.31570 * 14 13 11 16 16 C 1.35232 * 107.86655 * 180.13084 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84998 * 16 15 14 18 18 N 1.34968 * 107.86163 * 359.58679 * 16 15 14 19 19 C 1.46509 * 125.97450 * 180.23081 * 18 16 15 20 20 C 1.50698 * 109.47025 * 89.99735 * 19 18 16 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48503 * 109.47226 * 329.99788 * 24 22 20 28 28 N 1.31221 * 125.97269 * 179.97438 * 14 13 11 29 29 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47407 * 300.00257 * 1 2 3 31 31 H 1.09004 * 109.47255 * 60.00248 * 1 2 3 32 32 H 1.09004 * 109.47188 * 239.99286 * 2 1 3 33 33 H 1.09007 * 109.47047 * 120.00228 * 2 1 3 34 34 H 1.08993 * 109.47231 * 59.99807 * 3 2 1 35 35 H 1.09004 * 109.46750 * 299.99534 * 3 2 1 36 36 H 1.09000 * 109.47601 * 59.99672 * 4 3 2 37 37 H 1.09004 * 109.47139 * 299.99633 * 4 3 2 38 38 H 0.97006 * 120.00311 * 239.99857 * 7 5 4 39 39 H 0.96999 * 120.00568 * 0.02562 * 9 8 7 40 40 H 0.97005 * 119.99870 * 179.97438 * 9 8 7 41 41 H 0.96991 * 120.00480 * 0.02562 * 13 11 5 42 42 H 1.07995 * 126.06342 * 0.02562 * 15 14 13 43 43 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 44 44 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 45 45 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 46 46 H 1.08994 * 109.46750 * 210.00045 * 19 18 16 47 47 H 1.09004 * 109.46474 * 329.99737 * 19 18 16 48 48 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8848 -0.0013 6 1 3.6451 3.4237 -0.8431 7 7 3.6929 3.5402 1.2504 8 6 4.1179 3.0451 2.4298 9 7 3.7614 3.6478 3.5814 10 8 4.8229 2.0549 2.4548 11 6 5.5819 2.8866 -0.1256 12 8 6.2719 3.0399 0.8601 13 7 6.1583 2.7178 -1.3322 14 6 7.5551 2.7189 -1.4478 15 6 8.4698 2.8783 -0.3944 16 6 9.7165 2.8235 -0.9157 17 6 11.0061 2.9519 -0.1466 18 7 9.6007 2.6277 -2.2460 19 6 10.7081 2.5031 -3.1972 20 6 11.1060 1.0546 -3.3179 21 1 10.5858 0.3020 -2.7439 22 6 12.1335 0.6901 -4.1619 23 7 12.7666 1.6064 -4.8612 24 14 12.6263 -1.1056 -4.3121 25 1 11.8401 -1.7455 -5.3972 26 1 14.0740 -1.1965 -4.6301 27 1 12.3567 -1.8019 -3.0285 28 7 8.2368 2.5650 -2.5584 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8892 38 1 3.1308 4.3305 1.2305 39 1 3.1987 4.4376 3.5615 40 1 4.0669 3.2912 4.4302 41 1 5.6065 2.5956 -2.1205 42 1 8.2217 3.0210 0.6469 43 1 11.3045 3.9996 -0.1098 44 1 11.7837 2.3698 -0.6414 45 1 10.8630 2.5789 0.8676 46 1 10.3935 2.8759 -4.1719 47 1 11.5587 3.0853 -2.8426 48 1 13.4897 1.3500 -5.4547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271060067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:17 Heat of formation + Delta-G solvation = -1.185440 kcal Electronic energy + Delta-G solvation = -29446.523997 eV Core-core repulsion = 25345.000131 eV Total energy + Delta-G solvation = -4101.523866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.91685 -40.23259 -38.65670 -36.43029 -34.74550 -34.33974 -33.62855 -33.32007 -31.44702 -30.87339 -30.49496 -27.46124 -26.36977 -26.19147 -23.43728 -22.85993 -22.07528 -21.24479 -20.40745 -19.71432 -19.10541 -18.59460 -17.47927 -16.68027 -16.48499 -16.15278 -15.84453 -15.34739 -15.14438 -14.83339 -14.59076 -14.35950 -14.28705 -14.10663 -13.90393 -13.48463 -13.21861 -12.91226 -12.88383 -12.44384 -12.26454 -12.18858 -11.96453 -11.60113 -11.50558 -11.36584 -11.33932 -11.16646 -11.00126 -10.83642 -10.80952 -10.36218 -10.24070 -10.12411 -9.84954 -9.68951 -9.65090 -9.46320 -8.91899 -8.61601 -7.85600 -7.37158 -6.22668 -4.30186 2.38769 2.60201 2.89224 3.05037 3.24147 3.30132 3.33761 3.36300 3.78834 3.93334 4.30438 4.33387 4.48851 4.63384 4.69072 4.77956 4.90497 5.05015 5.10824 5.16551 5.43943 5.47210 5.52780 5.60073 5.64803 5.78533 5.81783 5.94793 6.01199 6.02018 6.14696 6.15151 6.24750 6.34504 6.53254 6.54274 6.66110 6.81127 6.83414 6.98449 7.09174 7.54453 7.70260 7.75500 7.84138 7.92503 8.11545 8.39987 8.67006 8.71710 8.79949 9.36165 10.84443 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.002562 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.244252 B =10926.220054 C =12089.104996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.138 4.138 5 C 0.162 3.838 6 H 0.111 0.889 7 N -0.732 5.732 8 C 0.710 3.290 9 N -0.872 5.872 10 O -0.559 6.559 11 C 0.501 3.499 12 O -0.480 6.480 13 N -0.634 5.634 14 C 0.267 3.733 15 C -0.288 4.288 16 C 0.090 3.910 17 C -0.088 4.088 18 N -0.318 5.318 19 C 0.259 3.741 20 C -0.535 4.535 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.892 5.892 24 Si 0.906 3.094 25 H -0.278 1.278 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.323 5.323 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.399 0.601 39 H 0.392 0.608 40 H 0.413 0.587 41 H 0.407 0.593 42 H 0.158 0.842 43 H 0.069 0.931 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.703 5.817 12.396 27.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.177 4.177 5 C 0.052 3.948 6 H 0.129 0.871 7 N -0.389 5.389 8 C 0.408 3.592 9 N -0.440 5.440 10 O -0.433 6.433 11 C 0.284 3.716 12 O -0.349 6.349 13 N -0.283 5.283 14 C 0.014 3.986 15 C -0.319 4.319 16 C -0.041 4.041 17 C -0.146 4.146 18 N -0.101 5.101 19 C 0.141 3.859 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.530 5.530 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.196 1.196 28 N -0.154 5.154 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.233 0.767 39 H 0.219 0.781 40 H 0.245 0.755 41 H 0.242 0.758 42 H 0.175 0.825 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.421 4.894 11.521 25.678 hybrid contribution -0.312 -0.223 0.395 0.551 sum -22.733 4.671 11.916 26.088 Atomic orbital electron populations 1.21764 0.95977 1.01542 1.01574 1.21523 0.95634 0.96869 1.02379 1.21536 0.94384 0.97045 1.01860 1.22057 0.96071 0.94234 1.05319 1.20601 0.91077 0.96319 0.86817 0.87101 1.44667 1.56720 1.33439 1.04107 1.15845 0.79620 0.83235 0.80503 1.42968 1.58819 1.34440 1.07782 1.91000 1.39753 1.26850 1.85736 1.20894 0.90702 0.77516 0.82509 1.90706 1.63429 1.44731 1.36078 1.42489 1.03311 1.72148 1.10338 1.18987 0.83783 1.02556 0.93268 1.21246 0.89359 1.20734 1.00554 1.21050 0.96928 1.00697 0.85465 1.20369 0.92893 1.02377 0.99006 1.48964 1.03816 1.51261 1.06045 1.19665 0.80193 0.98527 0.87466 1.21343 1.17686 0.91983 1.26367 0.91740 1.24926 0.95631 0.98423 0.94807 1.69917 1.23016 1.33268 1.26837 0.86362 0.77622 0.83983 0.78774 1.20343 1.20894 1.19620 1.77234 0.88533 1.29286 1.20301 0.92863 0.92962 0.92792 0.91822 0.91950 0.91967 0.92017 0.90461 0.88391 0.76733 0.78107 0.75494 0.75809 0.82489 0.91184 0.89941 0.90675 0.93060 0.92873 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.13 -0.96 5.93 -26.74 -0.16 -1.12 16 3 C -0.11 -0.79 5.10 -26.73 -0.14 -0.93 16 4 C -0.14 -1.34 4.54 -26.73 -0.12 -1.47 16 5 C 0.16 1.56 3.01 -69.08 -0.21 1.35 16 6 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 7 N -0.73 -6.19 4.66 -59.82 -0.28 -6.47 16 8 C 0.71 8.19 7.59 -86.91 -0.66 7.53 16 9 N -0.87 -6.24 8.88 27.63 0.25 -5.99 16 10 O -0.56 -9.44 13.03 -18.20 -0.24 -9.67 16 11 C 0.50 7.52 6.78 -10.98 -0.07 7.45 16 12 O -0.48 -9.16 10.81 -17.95 -0.19 -9.35 16 13 N -0.63 -10.03 5.45 -11.13 -0.06 -10.10 16 14 C 0.27 5.63 8.11 -154.38 -1.25 4.37 16 15 C -0.29 -6.28 9.52 -39.83 -0.38 -6.66 16 16 C 0.09 1.99 6.92 -82.28 -0.57 1.42 16 17 C -0.09 -1.60 9.89 36.01 0.36 -1.24 16 18 N -0.32 -7.79 3.59 -58.32 -0.21 -8.00 16 19 C 0.26 6.79 5.81 -5.19 -0.03 6.76 16 20 C -0.54 -15.04 9.39 -34.44 -0.32 -15.37 16 21 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 24 Si 0.91 21.47 29.54 -169.99 -5.02 16.45 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 N -0.32 -7.64 12.59 31.44 0.40 -7.24 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.44 7.75 -51.93 -0.40 0.04 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.31 6.04 -51.93 -0.31 0.99 16 38 H 0.40 1.85 8.84 -40.82 -0.36 1.49 16 39 H 0.39 1.39 8.84 -40.82 -0.36 1.03 16 40 H 0.41 2.81 8.93 -40.82 -0.36 2.44 16 41 H 0.41 5.04 8.82 -40.82 -0.36 4.68 16 42 H 0.16 3.45 5.92 -52.49 -0.31 3.14 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 44 H 0.08 1.59 7.71 -51.93 -0.40 1.19 16 45 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.05 1.38 7.65 -51.93 -0.40 0.98 16 48 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 397.32 15.07 5.99 5.99 Total: -1.00 -37.66 397.32 -9.39 -47.05 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.47 Total: 8.76 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -3.29 Total: 3.22 kcal Atomic # 7 Polarization: -63.27 SS G_CDS: 0.83 Total: -62.44 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.43 Total: -19.03 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.66 -9.39 -47.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271060067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.861 kcal (2) G-P(sol) polarization free energy of solvation -37.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds