Wall clock time and date at job start Tue Mar 31 2020 20:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47422 * 2 1 4 4 C 1.53000 * 109.47342 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47163 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.47421 * 304.99944 * 5 4 3 7 7 N 1.46498 * 109.47200 * 64.99800 * 5 4 3 8 8 C 1.34786 * 119.99953 * 59.99866 * 7 5 4 9 9 N 1.34774 * 119.99644 * 180.02562 * 8 7 5 10 10 O 1.21577 * 119.99851 * 0.02562 * 8 7 5 11 11 C 1.50704 * 109.47341 * 184.99410 * 5 4 3 12 12 O 1.21291 * 120.00259 * 260.00280 * 11 5 4 13 13 N 1.34779 * 119.99258 * 79.99937 * 11 5 4 14 14 C 1.40162 * 119.99437 * 180.02562 * 13 11 5 15 15 C 1.40415 * 125.97631 * 0.31570 * 14 13 11 16 16 C 1.35232 * 107.86655 * 180.13084 * 15 14 13 17 17 C 1.50703 * 126.06766 * 179.84998 * 16 15 14 18 18 N 1.34968 * 107.86163 * 359.58679 * 16 15 14 19 19 C 1.46509 * 125.97450 * 180.23081 * 18 16 15 20 20 C 1.50698 * 109.47025 * 89.99735 * 19 18 16 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48503 * 109.47226 * 329.99788 * 24 22 20 28 28 N 1.31221 * 125.97269 * 179.97438 * 14 13 11 29 29 H 1.09006 * 109.47473 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47407 * 300.00257 * 1 2 3 31 31 H 1.09004 * 109.47255 * 60.00248 * 1 2 3 32 32 H 1.09004 * 109.47188 * 239.99286 * 2 1 3 33 33 H 1.09007 * 109.47047 * 120.00228 * 2 1 3 34 34 H 1.08993 * 109.47231 * 59.99807 * 3 2 1 35 35 H 1.09004 * 109.46750 * 299.99534 * 3 2 1 36 36 H 1.09000 * 109.47601 * 59.99672 * 4 3 2 37 37 H 1.09004 * 109.47139 * 299.99633 * 4 3 2 38 38 H 0.97006 * 120.00311 * 239.99857 * 7 5 4 39 39 H 0.96999 * 120.00568 * 0.02562 * 9 8 7 40 40 H 0.97005 * 119.99870 * 179.97438 * 9 8 7 41 41 H 0.96991 * 120.00480 * 0.02562 * 13 11 5 42 42 H 1.07995 * 126.06342 * 0.02562 * 15 14 13 43 43 H 1.09002 * 109.47152 * 269.68932 * 17 16 15 44 44 H 1.09001 * 109.46980 * 149.69032 * 17 16 15 45 45 H 1.09004 * 109.47113 * 29.69013 * 17 16 15 46 46 H 1.08994 * 109.46750 * 210.00045 * 19 18 16 47 47 H 1.09004 * 109.46474 * 329.99737 * 19 18 16 48 48 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8848 -0.0013 6 1 3.6451 3.4237 -0.8431 7 7 3.6929 3.5402 1.2504 8 6 4.1179 3.0451 2.4298 9 7 3.7614 3.6478 3.5814 10 8 4.8229 2.0549 2.4548 11 6 5.5819 2.8866 -0.1256 12 8 6.2719 3.0399 0.8601 13 7 6.1583 2.7178 -1.3322 14 6 7.5551 2.7189 -1.4478 15 6 8.4698 2.8783 -0.3944 16 6 9.7165 2.8235 -0.9157 17 6 11.0061 2.9519 -0.1466 18 7 9.6007 2.6277 -2.2460 19 6 10.7081 2.5031 -3.1972 20 6 11.1060 1.0546 -3.3179 21 1 10.5858 0.3020 -2.7439 22 6 12.1335 0.6901 -4.1619 23 7 12.7666 1.6064 -4.8612 24 14 12.6263 -1.1056 -4.3121 25 1 11.8401 -1.7455 -5.3972 26 1 14.0740 -1.1965 -4.6301 27 1 12.3567 -1.8019 -3.0285 28 7 8.2368 2.5650 -2.5584 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5140 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8892 38 1 3.1308 4.3305 1.2305 39 1 3.1987 4.4376 3.5615 40 1 4.0669 3.2912 4.4302 41 1 5.6065 2.5956 -2.1205 42 1 8.2217 3.0210 0.6469 43 1 11.3045 3.9996 -0.1098 44 1 11.7837 2.3698 -0.6414 45 1 10.8630 2.5789 0.8676 46 1 10.3935 2.8759 -4.1719 47 1 11.5587 3.0853 -2.8426 48 1 13.4897 1.3500 -5.4547 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271060067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:16 Heat of formation + Delta-G solvation = -29.390870 kcal Electronic energy + Delta-G solvation = -29447.747076 eV Core-core repulsion = 25345.000131 eV Total energy + Delta-G solvation = -4102.746945 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.34577 -41.47217 -39.82737 -37.19958 -36.28018 -35.27947 -35.16765 -34.38795 -33.05295 -32.64426 -31.31742 -28.88091 -27.91101 -27.63325 -25.06050 -23.89715 -23.20306 -22.06178 -21.47466 -21.24521 -20.43843 -19.48711 -18.81178 -18.34173 -17.66248 -17.53483 -17.05383 -16.59016 -16.49801 -16.14299 -15.75481 -15.73117 -15.38054 -15.18426 -14.91360 -14.69601 -14.35914 -14.25672 -14.02321 -13.82676 -13.62364 -13.57993 -13.47334 -13.16028 -12.85476 -12.75923 -12.69959 -12.26197 -12.18731 -12.08200 -11.98159 -11.75676 -11.54613 -11.43966 -11.31233 -11.17802 -10.78384 -10.74417 -10.41861 -9.90620 -9.57093 -9.12150 -8.33668 -6.51465 0.93560 1.32094 1.36821 1.37781 1.44028 1.50449 1.99097 2.21378 2.30231 2.36633 2.56630 2.95630 3.52270 3.70015 3.84584 3.92143 4.01878 4.14707 4.18261 4.26029 4.43389 4.45271 4.56310 4.72230 4.78656 4.84820 4.86644 4.90011 4.96949 5.01422 5.03093 5.05822 5.13268 5.23964 5.26302 5.35443 5.40858 5.52415 5.52724 5.55296 5.80297 5.96694 6.00767 6.15138 6.25174 6.33533 6.61294 7.02768 7.19499 7.21844 7.23890 7.88683 8.72143 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.014065 B = 0.002562 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.244252 B =10926.220054 C =12089.104996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.100 4.100 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.164 0.836 7 N -0.717 5.717 8 C 0.700 3.300 9 N -0.854 5.854 10 O -0.618 6.618 11 C 0.495 3.505 12 O -0.520 6.520 13 N -0.624 5.624 14 C 0.276 3.724 15 C -0.300 4.300 16 C 0.085 3.915 17 C -0.085 4.085 18 N -0.343 5.343 19 C 0.276 3.724 20 C -0.554 4.554 21 H 0.047 0.953 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.272 1.272 28 N -0.356 5.356 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.421 0.579 39 H 0.412 0.588 40 H 0.416 0.584 41 H 0.424 0.576 42 H 0.157 0.843 43 H 0.094 0.906 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.026 0.974 47 H 0.051 0.949 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.741 6.365 12.558 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.167 4.167 3 C -0.138 4.138 4 C -0.172 4.172 5 C 0.061 3.939 6 H 0.181 0.819 7 N -0.375 5.375 8 C 0.398 3.602 9 N -0.423 5.423 10 O -0.496 6.496 11 C 0.281 3.719 12 O -0.392 6.392 13 N -0.276 5.276 14 C 0.022 3.978 15 C -0.331 4.331 16 C -0.045 4.045 17 C -0.143 4.143 18 N -0.126 5.126 19 C 0.158 3.842 20 C -0.592 4.592 21 H 0.065 0.935 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.197 1.197 28 N -0.187 5.187 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.061 0.939 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.259 0.741 39 H 0.242 0.758 40 H 0.248 0.752 41 H 0.262 0.738 42 H 0.174 0.826 43 H 0.112 0.888 44 H 0.087 0.913 45 H 0.115 0.885 46 H 0.044 0.956 47 H 0.069 0.931 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -24.543 5.515 11.693 27.740 hybrid contribution 0.236 -0.346 0.446 0.612 sum -24.307 5.169 12.140 27.657 Atomic orbital electron populations 1.21737 0.94750 1.01763 1.02289 1.21538 0.96695 0.97155 1.01350 1.21478 0.92000 0.96937 1.03343 1.21984 0.98013 0.93773 1.03438 1.20748 0.86910 0.97309 0.88920 0.81880 1.44499 1.56251 1.33888 1.02896 1.16202 0.79253 0.82810 0.81896 1.42781 1.58225 1.34586 1.06729 1.90975 1.42448 1.29503 1.86705 1.22095 0.92928 0.75607 0.81272 1.90685 1.64913 1.46275 1.37296 1.42686 1.01195 1.71863 1.11836 1.19355 0.86090 1.00096 0.92248 1.21358 0.89633 1.21492 1.00654 1.21702 0.98653 0.99315 0.84827 1.20480 0.90632 1.03836 0.99335 1.48777 1.03874 1.53365 1.06558 1.19236 0.80682 0.97516 0.86799 1.21432 1.18330 0.92518 1.26967 0.93506 1.25712 0.95233 1.02684 0.94069 1.69991 1.23287 1.35185 1.27020 0.85375 0.77934 0.78690 0.78611 1.19833 1.19342 1.19685 1.77160 0.88474 1.31364 1.21671 0.93000 0.92582 0.91666 0.92118 0.93869 0.91547 0.89259 0.90462 0.92314 0.74072 0.75762 0.75224 0.73767 0.82559 0.88774 0.91324 0.88473 0.95552 0.93109 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 71.98 0.71 -0.87 16 2 C -0.13 -1.80 5.93 30.59 0.18 -1.62 16 3 C -0.10 -1.16 5.10 30.59 0.16 -1.01 16 4 C -0.13 -2.41 4.54 30.59 0.14 -2.27 16 5 C 0.17 2.86 3.01 44.25 0.13 3.00 16 6 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 7 N -0.72 -10.34 4.66 -461.42 -2.15 -12.49 16 8 C 0.70 15.45 7.59 179.05 1.36 16.81 16 9 N -0.85 -10.90 8.88 -184.75 -1.64 -12.54 16 10 O -0.62 -21.24 13.03 18.50 0.24 -21.00 16 11 C 0.50 14.42 6.78 87.66 0.59 15.01 16 12 O -0.52 -19.90 10.81 19.40 0.21 -19.69 16 13 N -0.62 -19.29 5.45 -307.50 -1.68 -20.96 16 14 C 0.28 11.76 8.11 133.32 1.08 12.84 16 15 C -0.30 -13.30 9.52 22.11 0.21 -13.08 16 16 C 0.09 3.84 6.92 41.38 0.29 4.13 16 17 C -0.08 -3.06 9.89 71.24 0.70 -2.36 16 18 N -0.34 -17.29 3.59 -338.43 -1.22 -18.51 16 19 C 0.28 15.01 5.81 85.63 0.50 15.51 16 20 C -0.55 -31.93 9.39 25.60 0.24 -31.69 16 21 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 22 C 0.02 1.35 5.46 84.66 0.46 1.81 16 23 N -0.92 -52.43 13.29 21.45 0.28 -52.14 16 24 Si 0.97 44.02 29.54 68.60 2.03 46.04 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 27 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 28 N -0.36 -17.23 12.59 -54.44 -0.69 -17.91 16 29 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 33 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.74 7.75 -2.39 -0.02 0.72 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.59 6.04 -2.39 -0.01 1.58 16 38 H 0.42 2.32 8.84 -92.70 -0.82 1.50 16 39 H 0.41 1.87 8.84 -92.71 -0.82 1.05 16 40 H 0.42 5.24 8.93 -92.70 -0.83 4.41 16 41 H 0.42 9.85 8.82 -92.71 -0.82 9.03 16 42 H 0.16 6.98 5.92 -2.91 -0.02 6.96 16 43 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 44 H 0.07 2.67 7.71 -2.39 -0.02 2.65 16 45 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 46 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 48 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -85.82 397.32 -0.10 -85.92 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: -2.26 Total: 27.05 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 6.76 Total: 16.22 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -7.08 Total: -134.55 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: 0.45 Total: -40.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -85.82 -0.10 -85.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271060067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.531 kcal (2) G-P(sol) polarization free energy of solvation -85.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds