Wall clock time and date at job start Tue Mar 31 2020 20:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03777 * 124.99918 * 5 4 3 7 7 C 1.35325 * 107.74538 * 179.97438 * 6 5 4 8 8 C 1.50697 * 126.04020 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47051 * 260.02314 * 8 7 6 10 10 C 1.34779 * 119.99930 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99840 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00005 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00199 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47089 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00449 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99854 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00030 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99861 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99753 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47000 * 120.00244 * 21 19 17 24 24 H 1.48503 * 109.47115 * 240.00099 * 21 19 17 25 25 C 1.39875 * 107.91725 * 359.97438 * 7 6 5 26 26 C 1.50699 * 125.89439 * 179.97438 * 25 7 6 27 27 N 1.30838 * 108.20344 * 359.74614 * 25 7 6 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 36 36 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 37 37 H 1.07997 * 126.13184 * 359.97438 * 6 5 4 38 38 H 1.09004 * 109.46964 * 20.02097 * 8 7 6 39 39 H 1.08996 * 109.47221 * 140.02006 * 8 7 6 40 40 H 0.97002 * 119.99948 * 359.97438 * 9 8 7 41 41 H 0.97002 * 119.99872 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47287 * 300.00159 * 13 12 10 43 43 H 1.09000 * 109.47069 * 60.00068 * 13 12 10 44 44 H 0.97006 * 119.99674 * 0.02562 * 16 14 13 45 45 H 0.96993 * 119.99983 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.47472 * 90.00330 * 26 25 7 47 47 H 1.09007 * 109.46909 * 210.00328 * 26 25 7 48 48 H 1.09005 * 109.47120 * 330.00164 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.9135 3.3638 0.8921 7 6 5.1124 4.6562 0.5434 8 6 5.9957 5.6427 1.2627 9 7 5.1727 6.5032 2.1162 10 6 5.7517 7.4668 2.8597 11 8 6.9571 7.6216 2.8224 12 7 4.9946 8.2587 3.6445 13 6 5.6239 9.3057 4.4531 14 6 4.5656 10.0421 5.2334 15 8 3.4004 9.7234 5.1252 16 7 4.9140 11.0549 6.0516 17 6 3.9513 11.7244 6.7619 18 1 2.9138 11.4406 6.6656 19 6 4.3105 12.7689 7.6051 20 7 5.5729 13.1153 7.7212 21 14 2.9989 13.6807 8.5734 22 1 1.6661 13.1013 8.2685 23 1 3.2750 13.5487 10.0265 24 1 3.0132 15.1168 8.1953 25 6 4.3532 4.9144 -0.6027 26 6 4.2761 6.2300 -1.3336 27 7 3.7255 3.8151 -0.9334 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9288 -0.8909 37 1 5.3592 2.8559 1.7345 38 1 6.7167 5.1039 1.8775 39 1 6.5260 6.2548 0.5332 40 1 4.2111 6.3795 2.1462 41 1 4.0329 8.1355 3.6740 42 1 6.3352 8.8531 5.1440 43 1 6.1464 10.0046 3.7999 44 1 5.8459 11.3100 6.1379 45 1 5.8235 13.8446 8.3095 46 1 5.0514 6.2665 -2.0989 47 1 3.2972 6.3281 -1.8030 48 1 4.4239 7.0472 -0.6274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345595067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:48 Heat of formation + Delta-G solvation = -10.159032 kcal Electronic energy + Delta-G solvation = -27688.329867 eV Core-core repulsion = 23586.416877 eV Total energy + Delta-G solvation = -4101.912990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.63306 -39.67549 -38.15807 -36.64035 -34.96783 -34.32093 -33.58375 -33.45388 -31.36627 -31.06152 -30.23328 -27.99876 -27.39587 -25.59879 -24.27436 -23.41280 -21.74282 -21.06692 -20.60747 -19.73125 -19.52873 -18.36126 -17.93991 -16.99221 -16.27283 -16.07985 -15.54107 -15.49660 -15.36756 -14.66275 -14.63137 -14.32044 -14.28187 -14.09669 -13.95918 -13.76653 -13.43543 -13.40347 -13.07717 -12.92891 -12.76258 -12.52318 -12.26489 -12.13257 -11.90803 -11.81901 -11.75001 -11.60874 -11.56226 -11.18054 -11.12254 -10.69838 -10.39053 -10.30270 -10.02287 -9.61876 -9.48987 -9.06146 -8.73666 -8.58494 -8.50128 -8.06802 -6.48762 -3.90553 1.54738 2.13110 2.28958 3.12136 3.15523 3.24412 3.31457 3.49576 3.79138 3.94995 4.12441 4.27173 4.42752 4.47075 4.54145 4.61447 4.66924 4.79800 4.92128 4.95297 4.99378 5.04712 5.20026 5.21101 5.22995 5.26311 5.38690 5.44392 5.61268 5.64266 5.66096 5.73112 5.77192 5.82107 5.92722 5.98044 6.06364 6.12783 6.40640 6.60822 6.69320 6.83250 7.21738 7.44609 7.48849 7.95876 8.33554 8.48674 8.89030 9.07799 9.43078 9.91126 10.68274 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.001730 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.280223 B =16177.465069 C =17318.952984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.132 4.132 4 C 0.135 3.865 5 N -0.372 5.372 6 C 0.078 3.922 7 C -0.257 4.257 8 C 0.223 3.777 9 N -0.745 5.745 10 C 0.704 3.296 11 O -0.600 6.600 12 N -0.726 5.726 13 C 0.129 3.871 14 C 0.429 3.571 15 O -0.598 6.598 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.895 5.895 21 Si 0.932 3.068 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.280 1.280 25 C 0.091 3.909 26 C -0.077 4.077 27 N -0.295 5.295 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.175 0.825 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.396 0.604 41 H 0.406 0.594 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.396 0.604 45 H 0.273 0.727 46 H 0.078 0.922 47 H 0.072 0.928 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.674 -24.242 -16.397 29.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.171 4.171 4 C 0.014 3.986 5 N -0.153 5.153 6 C -0.069 4.069 7 C -0.269 4.269 8 C 0.098 3.902 9 N -0.402 5.402 10 C 0.404 3.596 11 O -0.479 6.479 12 N -0.383 5.383 13 C 0.001 3.999 14 C 0.215 3.785 15 O -0.484 6.484 16 N -0.185 5.185 17 C -0.434 4.434 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.535 5.535 21 Si 0.759 3.241 22 H -0.192 1.192 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.076 4.076 26 C -0.136 4.136 27 N -0.117 5.117 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.192 0.808 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.229 0.771 41 H 0.243 0.757 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.230 0.770 45 H 0.083 0.917 46 H 0.096 0.904 47 H 0.091 0.909 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.089 -24.850 -17.184 30.370 hybrid contribution -0.301 0.776 1.294 1.539 sum -3.390 -24.074 -15.890 29.044 Atomic orbital electron populations 1.21751 0.95225 1.01854 1.02198 1.21462 0.96613 0.95627 1.02270 1.21910 0.93257 0.97890 1.04004 1.21785 0.95804 0.77257 1.03780 1.48569 1.35457 1.10228 1.21018 1.22444 0.94379 0.94512 0.95592 1.19988 1.09955 0.95216 1.01716 1.19157 0.90365 0.89104 0.91603 1.45221 1.10680 1.36232 1.48045 1.15875 0.85307 0.79435 0.79024 1.90902 1.12617 1.73754 1.70652 1.44783 1.11333 1.35615 1.46579 1.20766 0.94931 0.89892 0.94356 1.19799 0.89389 0.84379 0.84924 1.90489 1.19526 1.69118 1.69310 1.41797 1.10695 1.28503 1.37536 1.19778 0.91095 1.12178 1.20301 0.87664 1.25319 0.97143 0.97428 0.97876 1.69624 1.15874 1.29575 1.38420 0.85763 0.80486 0.78932 0.78926 1.19179 1.20660 1.20639 1.22310 0.95023 0.95178 0.95054 1.20236 1.03120 0.90419 0.99789 1.77321 1.24243 0.96647 1.13512 0.92488 0.92548 0.92532 0.91659 0.91719 0.90319 0.91236 0.88615 0.89813 0.80777 0.91338 0.91005 0.77053 0.75674 0.90084 0.90032 0.77016 0.91681 0.90383 0.90856 0.90006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.51 5.93 -26.73 -0.16 -0.67 16 3 C -0.13 -0.76 5.41 -26.73 -0.14 -0.91 16 4 C 0.13 0.74 6.51 -4.05 -0.03 0.72 16 5 N -0.37 -3.26 3.68 -61.37 -0.23 -3.48 16 6 C 0.08 0.65 11.36 -17.22 -0.20 0.46 16 7 C -0.26 -2.52 5.47 -105.05 -0.57 -3.09 16 8 C 0.22 2.42 5.78 -5.19 -0.03 2.39 16 9 N -0.75 -9.17 5.55 -66.41 -0.37 -9.54 16 10 C 0.70 11.49 8.57 -86.92 -0.74 10.74 16 11 O -0.60 -11.75 16.34 5.29 0.09 -11.66 16 12 N -0.73 -12.35 5.53 -66.42 -0.37 -12.72 16 13 C 0.13 2.43 6.15 -5.20 -0.03 2.40 16 14 C 0.43 9.92 7.85 -10.98 -0.09 9.84 16 15 O -0.60 -15.39 15.24 5.55 0.08 -15.30 16 16 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.03 0.66 5.50 -17.46 -0.10 0.56 16 20 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 21 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 C 0.09 0.96 7.22 -82.40 -0.59 0.36 16 26 C -0.08 -0.67 10.26 36.01 0.37 -0.30 16 27 N -0.29 -3.27 12.42 33.67 0.42 -2.85 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.31 8.07 -51.93 -0.42 -0.11 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.40 4.31 8.48 -40.82 -0.35 3.97 16 41 H 0.41 6.77 7.45 -40.82 -0.30 6.46 16 42 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.40 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -33.70 410.95 -8.28 -41.99 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -7.66 Total: 15.12 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: -2.09 Total: 13.69 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.12 Total: -65.62 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: 0.17 Total: -26.97 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.70 -8.28 -41.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345595067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.829 kcal (2) G-P(sol) polarization free energy of solvation -33.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds