Wall clock time and date at job start Tue Mar 31 2020 20:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47294 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03777 * 124.99918 * 5 4 3 7 7 C 1.35325 * 107.74538 * 179.97438 * 6 5 4 8 8 C 1.50697 * 126.04020 * 179.97438 * 7 6 5 9 9 N 1.46504 * 109.47051 * 260.02314 * 8 7 6 10 10 C 1.34779 * 119.99930 * 179.97438 * 9 8 7 11 11 O 1.21590 * 119.99840 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00005 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00199 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47089 * 180.02562 * 13 12 10 15 15 O 1.21287 * 120.00449 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99854 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00030 * 180.02562 * 16 14 13 18 18 H 1.07996 * 120.00193 * 359.97438 * 17 16 14 19 19 C 1.38958 * 119.99861 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00005 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 119.99753 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47000 * 120.00244 * 21 19 17 24 24 H 1.48503 * 109.47115 * 240.00099 * 21 19 17 25 25 C 1.39875 * 107.91725 * 359.97438 * 7 6 5 26 26 C 1.50699 * 125.89439 * 179.97438 * 25 7 6 27 27 N 1.30838 * 108.20344 * 359.74614 * 25 7 6 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 31 31 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 32 32 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 33 33 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 36 36 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 37 37 H 1.07997 * 126.13184 * 359.97438 * 6 5 4 38 38 H 1.09004 * 109.46964 * 20.02097 * 8 7 6 39 39 H 1.08996 * 109.47221 * 140.02006 * 8 7 6 40 40 H 0.97002 * 119.99948 * 359.97438 * 9 8 7 41 41 H 0.97002 * 119.99872 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47287 * 300.00159 * 13 12 10 43 43 H 1.09000 * 109.47069 * 60.00068 * 13 12 10 44 44 H 0.97006 * 119.99674 * 0.02562 * 16 14 13 45 45 H 0.96993 * 119.99983 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.47472 * 90.00330 * 26 25 7 47 47 H 1.09007 * 109.46909 * 210.00328 * 26 25 7 48 48 H 1.09005 * 109.47120 * 330.00164 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8237 -0.0013 6 6 4.9135 3.3638 0.8921 7 6 5.1124 4.6562 0.5434 8 6 5.9957 5.6427 1.2627 9 7 5.1727 6.5032 2.1162 10 6 5.7517 7.4668 2.8597 11 8 6.9571 7.6216 2.8224 12 7 4.9946 8.2587 3.6445 13 6 5.6239 9.3057 4.4531 14 6 4.5656 10.0421 5.2334 15 8 3.4004 9.7234 5.1252 16 7 4.9140 11.0549 6.0516 17 6 3.9513 11.7244 6.7619 18 1 2.9138 11.4406 6.6656 19 6 4.3105 12.7689 7.6051 20 7 5.5729 13.1153 7.7212 21 14 2.9989 13.6807 8.5734 22 1 1.6661 13.1013 8.2685 23 1 3.2750 13.5487 10.0265 24 1 3.0132 15.1168 8.1953 25 6 4.3532 4.9144 -0.6027 26 6 4.2761 6.2300 -1.3336 27 7 3.7255 3.8151 -0.9334 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9337 0.9286 0.8891 36 1 3.9330 0.9288 -0.8909 37 1 5.3592 2.8559 1.7345 38 1 6.7167 5.1039 1.8775 39 1 6.5260 6.2548 0.5332 40 1 4.2111 6.3795 2.1462 41 1 4.0329 8.1355 3.6740 42 1 6.3352 8.8531 5.1440 43 1 6.1464 10.0046 3.7999 44 1 5.8459 11.3100 6.1379 45 1 5.8235 13.8446 8.3095 46 1 5.0514 6.2665 -2.0989 47 1 3.2972 6.3281 -1.8030 48 1 4.4239 7.0472 -0.6274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345595067.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:09:47 Heat of formation + Delta-G solvation = -34.255686 kcal Electronic energy + Delta-G solvation = -27689.374776 eV Core-core repulsion = 23586.416877 eV Total energy + Delta-G solvation = -4102.957899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.33717 -41.05918 -39.95422 -37.16566 -36.25606 -35.84892 -35.19235 -34.11675 -33.34564 -31.85442 -30.90106 -29.23919 -28.30929 -26.78613 -25.81836 -24.00560 -22.15241 -21.90585 -21.75472 -21.32347 -20.46195 -20.08355 -19.48584 -17.80571 -17.39829 -17.12530 -16.85279 -16.75725 -16.45134 -16.07908 -15.82594 -15.77886 -15.23104 -15.17229 -15.03982 -14.73020 -14.46468 -14.18837 -13.92678 -13.77949 -13.65991 -13.53056 -13.52041 -13.31938 -13.17288 -12.93715 -12.87828 -12.42366 -12.35822 -12.19779 -12.10205 -11.97810 -11.60998 -11.55797 -11.42476 -11.38024 -10.52386 -10.34954 -10.19883 -10.07404 -9.73125 -9.44778 -8.48972 -5.98893 0.86551 1.36667 1.39664 1.44802 1.56824 1.58401 1.92927 2.01224 2.20581 2.31846 3.12440 3.18406 3.40435 3.48633 3.84208 3.87956 3.92652 4.08406 4.18785 4.24852 4.27584 4.38725 4.42832 4.46264 4.49470 4.52251 4.60118 4.76418 4.77811 4.81256 4.88741 4.98375 5.03625 5.09108 5.14263 5.21427 5.29949 5.36975 5.40688 5.41914 5.55638 5.68650 5.94628 6.03414 6.10220 6.51036 6.73508 7.06123 7.10072 7.46196 7.61138 7.97825 8.68181 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.015245 B = 0.001730 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.280223 B =16177.465069 C =17318.952984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.125 4.125 4 C 0.128 3.872 5 N -0.371 5.371 6 C 0.089 3.911 7 C -0.272 4.272 8 C 0.228 3.772 9 N -0.727 5.727 10 C 0.706 3.294 11 O -0.632 6.632 12 N -0.726 5.726 13 C 0.143 3.857 14 C 0.434 3.566 15 O -0.625 6.625 16 N -0.560 5.560 17 C -0.337 4.337 18 H 0.086 0.914 19 C -0.011 4.011 20 N -0.916 5.916 21 Si 0.997 3.003 22 H -0.271 1.271 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.080 3.920 26 C -0.075 4.075 27 N -0.327 5.327 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.207 0.793 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.405 0.595 41 H 0.408 0.592 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.399 0.601 45 H 0.279 0.721 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -25.594 -16.119 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.163 4.163 4 C 0.008 3.992 5 N -0.152 5.152 6 C -0.060 4.060 7 C -0.284 4.284 8 C 0.104 3.896 9 N -0.383 5.383 10 C 0.405 3.595 11 O -0.514 6.514 12 N -0.384 5.384 13 C 0.014 3.986 14 C 0.221 3.779 15 O -0.513 6.513 16 N -0.195 5.195 17 C -0.466 4.466 18 H 0.104 0.896 19 C -0.211 4.211 20 N -0.556 5.556 21 Si 0.820 3.180 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.197 1.197 25 C -0.086 4.086 26 C -0.134 4.134 27 N -0.150 5.150 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.110 0.890 37 H 0.224 0.776 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.240 0.760 41 H 0.246 0.754 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.233 0.767 45 H 0.089 0.911 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.986 -26.239 -16.942 31.375 hybrid contribution -0.354 1.085 1.143 1.615 sum -3.341 -25.154 -15.798 29.891 Atomic orbital electron populations 1.21777 0.95811 1.02184 1.01548 1.21436 0.96058 0.94596 1.03323 1.21807 0.93659 0.98595 1.02267 1.22100 0.95414 0.75955 1.05699 1.48847 1.35074 1.10842 1.20389 1.22927 0.93261 0.94094 0.95695 1.19893 1.10770 0.95767 1.01976 1.19150 0.90358 0.88922 0.91181 1.45174 1.11263 1.35003 1.46876 1.15932 0.84761 0.79738 0.79036 1.90882 1.13989 1.74749 1.71741 1.44711 1.11401 1.35516 1.46737 1.20570 0.93439 0.90206 0.94388 1.20461 0.89859 0.83537 0.84026 1.90467 1.21150 1.69700 1.69961 1.41838 1.10488 1.29128 1.38091 1.19772 0.90844 1.13784 1.22186 0.89633 1.26115 0.99258 0.97576 0.98180 1.69686 1.17168 1.29949 1.38778 0.84814 0.77650 0.77782 0.77732 1.19511 1.19661 1.19673 1.22566 0.95056 0.95544 0.95457 1.20243 1.03509 0.89794 0.99827 1.77276 1.25264 0.97438 1.14973 0.91653 0.93145 0.93293 0.90858 0.90324 0.92557 0.92458 0.85570 0.88996 0.77636 0.90975 0.91697 0.76035 0.75410 0.89025 0.89045 0.76675 0.91108 0.89543 0.90739 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.12 -0.79 5.93 30.60 0.18 -0.60 16 3 C -0.12 -1.32 5.41 30.60 0.17 -1.15 16 4 C 0.13 1.13 6.51 86.38 0.56 1.70 16 5 N -0.37 -5.88 3.68 -348.06 -1.28 -7.16 16 6 C 0.09 1.28 11.36 83.54 0.95 2.23 16 7 C -0.27 -4.97 5.47 -20.14 -0.11 -5.08 16 8 C 0.23 4.68 5.78 85.63 0.50 5.17 16 9 N -0.73 -17.05 5.55 -482.29 -2.68 -19.73 16 10 C 0.71 22.31 8.57 179.06 1.53 23.84 16 11 O -0.63 -24.16 16.34 -4.00 -0.07 -24.23 16 12 N -0.73 -24.12 5.53 -482.31 -2.67 -26.79 16 13 C 0.14 5.27 6.15 85.63 0.53 5.80 16 14 C 0.43 20.11 7.85 87.66 0.69 20.80 16 15 O -0.62 -32.39 15.24 -3.05 -0.05 -32.44 16 16 N -0.56 -28.19 5.29 -306.98 -1.62 -29.81 16 17 C -0.34 -18.59 9.68 84.04 0.81 -17.78 16 18 H 0.09 4.99 7.16 -2.91 -0.02 4.96 16 19 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 20 N -0.92 -48.69 13.05 21.67 0.28 -48.40 16 21 Si 1.00 41.87 29.55 68.60 2.03 43.90 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 25 C 0.08 1.63 7.22 43.10 0.31 1.94 16 26 C -0.08 -1.29 10.26 71.24 0.73 -0.56 16 27 N -0.33 -7.05 12.42 -47.38 -0.59 -7.64 16 28 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.47 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.13 0.36 8.07 -2.39 -0.02 0.34 16 36 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 38 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.40 8.32 8.48 -92.71 -0.79 7.53 16 41 H 0.41 13.35 7.45 -92.71 -0.69 12.66 16 42 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 43 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.40 19.31 7.90 -92.70 -0.73 18.57 16 45 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 1.22 8.14 -2.38 -0.02 1.21 16 48 H 0.08 1.37 7.96 -2.38 -0.02 1.35 16 Total: -1.00 -72.02 410.95 0.18 -71.85 By element: Atomic # 1 Polarization: 46.08 SS G_CDS: -1.21 Total: 44.87 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 8.03 Total: 35.59 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -8.55 Total: -139.53 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -0.11 Total: -56.67 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -72.02 0.18 -71.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345595067.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.592 kcal (2) G-P(sol) polarization free energy of solvation -72.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds