Wall clock time and date at job start Tue Mar 31 2020 19:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 C 1.35322 * 126.12880 * 95.00014 * 4 3 2 6 6 C 1.39870 * 107.91958 * 179.97438 * 5 4 3 7 7 C 1.50705 * 125.89679 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47087 * 74.99555 * 7 6 5 9 9 C 1.52997 * 109.46976 * 194.99795 * 7 6 5 10 10 C 1.53001 * 109.47058 * 314.99484 * 7 6 5 11 11 N 1.30837 * 108.20276 * 359.97438 * 6 5 4 12 12 N 1.34950 * 126.12688 * 274.68636 * 4 3 2 13 13 H 0.97001 * 126.03507 * 0.03260 * 12 4 3 14 14 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 15 15 O 1.21579 * 120.00114 * 179.72787 * 14 2 1 16 16 N 1.34777 * 119.99908 * 359.72514 * 14 2 1 17 17 C 1.46496 * 120.00258 * 179.97438 * 16 14 2 18 18 C 1.50699 * 109.47313 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00041 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99618 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99526 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00463 * 359.97438 * 21 20 18 23 23 C 1.38959 * 120.00019 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99541 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47706 * 59.99728 * 25 23 21 27 27 H 1.48506 * 109.47148 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47092 * 299.99754 * 25 23 21 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 1.07999 * 126.03563 * 359.93782 * 5 4 3 35 35 H 1.08993 * 109.47078 * 59.99961 * 8 7 6 36 36 H 1.09000 * 109.46825 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46690 * 299.99768 * 8 7 6 38 38 H 1.08991 * 109.47567 * 59.99658 * 9 7 6 39 39 H 1.09006 * 109.46856 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.46958 * 299.99709 * 9 7 6 41 41 H 1.08999 * 109.47033 * 59.99961 * 10 7 6 42 42 H 1.08992 * 109.47311 * 179.97438 * 10 7 6 43 43 H 1.09004 * 109.46959 * 300.00140 * 10 7 6 44 44 H 0.96999 * 120.00047 * 0.02562 * 16 14 2 45 45 H 1.09000 * 109.47024 * 300.00478 * 17 16 14 46 46 H 1.09004 * 109.46875 * 60.00324 * 17 16 14 47 47 H 0.96996 * 120.00263 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 6 1.6748 2.5614 -2.1360 6 6 2.2505 2.6996 -3.4032 7 6 1.7238 3.5583 -4.5241 8 6 2.0230 5.0285 -4.2240 9 6 2.4019 3.1572 -5.8356 10 6 0.2119 3.3610 -4.6505 11 7 3.3257 1.9554 -3.4470 12 7 3.4710 1.3226 -2.2057 13 1 4.1836 0.7141 -1.9553 14 6 2.1388 -1.1673 -0.0056 15 8 3.3546 -1.1673 -0.0106 16 7 1.4649 -2.3345 -0.0055 17 6 2.1973 -3.6032 -0.0121 18 6 1.2179 -4.7486 -0.0113 19 8 0.0256 -4.5269 -0.0062 20 7 1.6672 -6.0192 -0.0162 21 6 0.7763 -7.0612 -0.0160 22 1 -0.2855 -6.8639 -0.0114 23 6 1.2394 -8.3714 -0.0216 24 7 2.5313 -8.6115 -0.0276 25 14 0.0255 -9.7911 -0.0220 26 1 -0.8324 -9.7087 -1.2313 27 1 0.7679 -11.0772 -0.0278 28 1 -0.8242 -9.7162 1.1937 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 0.7759 3.0496 -1.7896 35 1 3.1000 5.1690 -4.1339 36 1 1.6416 5.6496 -5.0345 37 1 1.5398 5.3141 -3.2896 38 1 2.1889 2.1099 -6.0494 39 1 2.0213 3.7787 -6.6463 40 1 3.4791 3.2978 -5.7455 41 1 -0.2712 3.6466 -3.7162 42 1 -0.1691 3.9824 -5.4609 43 1 -0.0012 2.3135 -4.8643 44 1 0.4949 -2.3344 -0.0019 45 1 2.8199 -3.6586 -0.9051 46 1 2.8279 -3.6633 0.8749 47 1 2.6208 -6.1965 -0.0207 48 1 2.8546 -9.5260 -0.0311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358268978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:11 Heat of formation + Delta-G solvation = -0.915538 kcal Electronic energy + Delta-G solvation = -28912.722889 eV Core-core repulsion = 24811.210727 eV Total energy + Delta-G solvation = -4101.512162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53653 -40.08175 -38.29507 -37.05802 -35.68167 -34.56358 -33.77777 -31.50488 -31.28715 -30.53944 -28.19921 -27.58817 -27.49726 -27.11197 -25.52136 -24.20766 -22.71392 -20.85151 -19.90144 -19.67030 -18.49556 -18.38786 -17.83413 -17.56882 -16.48081 -15.77653 -15.58173 -15.14252 -15.03189 -14.71378 -14.56025 -14.38847 -14.19400 -14.04111 -13.76846 -13.61287 -13.50778 -13.32953 -13.04573 -12.65725 -12.50613 -12.35498 -12.26137 -12.05461 -11.96038 -11.88635 -11.65247 -11.38010 -11.24843 -11.22975 -11.12499 -10.52777 -10.52746 -10.34392 -10.17952 -9.65269 -9.41980 -9.10258 -8.76804 -8.66525 -8.62105 -8.12871 -6.53739 -3.95928 1.66003 2.50439 2.79492 2.87735 3.11675 3.20006 3.22184 3.23777 3.71491 3.96177 4.13550 4.25848 4.44564 4.67657 4.76621 4.78657 4.84114 4.96689 5.00521 5.14691 5.21743 5.30714 5.37116 5.38559 5.43589 5.54666 5.55935 5.58723 5.63360 5.67542 5.79586 5.83496 5.84861 5.94626 5.97037 6.03554 6.07543 6.16107 6.27241 6.54153 6.65533 6.85316 7.23989 7.43495 7.64539 7.89273 8.01918 8.42030 8.62291 9.01870 9.36356 9.84072 10.62995 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002035 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.915253 B =13758.483431 C =14126.575868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.630 5.630 3 C 0.194 3.806 4 C 0.074 3.926 5 C -0.259 4.259 6 C 0.084 3.916 7 C 0.012 3.988 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.137 4.137 11 N -0.287 5.287 12 N -0.458 5.458 13 H 0.443 0.557 14 C 0.707 3.293 15 O -0.599 6.599 16 N -0.720 5.720 17 C 0.127 3.873 18 C 0.428 3.572 19 O -0.599 6.599 20 N -0.548 5.548 21 C -0.306 4.306 22 H 0.105 0.895 23 C 0.026 3.974 24 N -0.894 5.894 25 Si 0.935 3.065 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.408 0.592 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.396 0.604 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.722 25.296 -4.049 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.368 5.368 3 C 0.069 3.931 4 C -0.057 4.057 5 C -0.289 4.289 6 C -0.082 4.082 7 C 0.010 3.990 8 C -0.193 4.193 9 C -0.194 4.194 10 C -0.195 4.195 11 N -0.110 5.110 12 N -0.166 5.166 13 H 0.288 0.712 14 C 0.408 3.592 15 O -0.479 6.479 16 N -0.378 5.378 17 C -0.002 4.002 18 C 0.213 3.787 19 O -0.485 6.485 20 N -0.182 5.182 21 C -0.435 4.435 22 H 0.123 0.877 23 C -0.177 4.177 24 N -0.534 5.534 25 Si 0.761 3.239 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.198 1.198 29 H 0.079 0.921 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.248 0.752 45 H 0.099 0.901 46 H 0.101 0.899 47 H 0.230 0.770 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.547 24.778 -4.737 25.233 hybrid contribution -0.732 -1.088 0.640 1.459 sum -1.279 23.690 -4.097 24.076 Atomic orbital electron populations 1.21800 0.79087 1.03592 1.02129 1.46943 1.06688 1.04157 1.78975 1.19802 0.99111 0.84869 0.89337 1.21592 0.90699 0.97709 0.95720 1.21028 1.04845 1.08321 0.94705 1.22119 0.93544 0.97167 0.95416 1.18984 0.95434 0.93225 0.91372 1.21836 1.01898 0.93774 1.01806 1.21789 1.00911 1.01530 0.95199 1.21852 0.93385 1.02191 1.02047 1.77280 1.20333 1.12918 1.00501 1.46404 1.22614 1.38139 1.09436 0.71231 1.15805 0.85188 0.80385 0.77809 1.90865 1.11513 1.86457 1.59019 1.44930 1.11152 1.03624 1.78132 1.20811 0.94052 0.82159 1.03130 1.19725 0.89115 0.84150 0.85685 1.90484 1.16495 1.84083 1.57473 1.41779 1.10014 1.03925 1.62521 1.19678 0.91389 0.84022 1.48447 0.87716 1.25338 0.96720 0.98933 0.96738 1.69607 1.12564 1.22123 1.49107 0.85860 0.79599 0.79273 0.79159 1.19764 1.20839 1.19762 0.92129 0.90589 0.90894 0.87658 0.88355 0.83884 0.92536 0.91980 0.92225 0.92429 0.92470 0.92062 0.92131 0.91999 0.92362 0.75217 0.90094 0.89905 0.77014 0.91504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.20 59.84 0.61 1.31 16 2 N -0.63 -7.33 2.86 -188.75 -0.54 -7.87 16 3 C 0.19 1.85 5.95 -5.20 -0.03 1.82 16 4 C 0.07 0.82 6.79 -82.26 -0.56 0.26 16 5 C -0.26 -2.65 10.01 -40.01 -0.40 -3.05 16 6 C 0.08 0.95 5.66 -82.40 -0.47 0.49 16 7 C 0.01 0.10 0.96 -155.66 -0.15 -0.05 16 8 C -0.14 -0.97 8.46 37.16 0.31 -0.65 16 9 C -0.14 -1.23 8.03 37.16 0.30 -0.93 16 10 C -0.14 -1.02 8.20 37.16 0.30 -0.71 16 11 N -0.29 -3.87 12.02 33.67 0.40 -3.46 16 12 N -0.46 -5.82 7.36 33.48 0.25 -5.58 16 13 H 0.44 5.55 8.96 -182.61 -1.64 3.92 16 14 C 0.71 11.07 8.28 -86.91 -0.72 10.35 16 15 O -0.60 -10.72 15.92 5.30 0.08 -10.63 16 16 N -0.72 -12.04 5.39 -66.42 -0.36 -12.40 16 17 C 0.13 2.34 6.15 -5.20 -0.03 2.31 16 18 C 0.43 9.76 7.85 -10.99 -0.09 9.68 16 19 O -0.60 -15.17 15.24 5.56 0.08 -15.08 16 20 N -0.55 -13.54 5.29 -10.96 -0.06 -13.59 16 21 C -0.31 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 23 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 24 N -0.89 -23.80 13.05 55.50 0.72 -23.07 16 25 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 27 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.07 0.75 6.37 -51.93 -0.33 0.42 16 32 H 0.11 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.10 1.00 7.42 -51.93 -0.39 0.62 16 34 H 0.14 1.12 7.71 -52.49 -0.40 0.72 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 41 H 0.06 0.40 7.53 -51.93 -0.39 0.01 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.41 6.71 5.17 -40.82 -0.21 6.50 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 46 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.40 9.42 7.90 -40.82 -0.32 9.10 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 401.89 15.07 6.06 6.06 Total: -1.00 -32.51 401.89 -8.21 -40.73 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: -8.68 Total: 16.49 kcal Atomic # 6 Polarization: 14.13 SS G_CDS: -1.16 Total: 12.97 kcal Atomic # 7 Polarization: -66.39 SS G_CDS: 0.42 Total: -65.97 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.17 Total: -25.72 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.51 -8.21 -40.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358268978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.812 kcal (2) G-P(sol) polarization free energy of solvation -32.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds