Wall clock time and date at job start Tue Mar 31 2020 19:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46494 * 120.00444 * 2 1 4 4 C 1.50694 * 109.47248 * 270.27463 * 3 2 1 5 5 C 1.35322 * 126.12880 * 95.00014 * 4 3 2 6 6 C 1.39870 * 107.91958 * 179.97438 * 5 4 3 7 7 C 1.50705 * 125.89679 * 180.02562 * 6 5 4 8 8 C 1.53001 * 109.47087 * 74.99555 * 7 6 5 9 9 C 1.52997 * 109.46976 * 194.99795 * 7 6 5 10 10 C 1.53001 * 109.47058 * 314.99484 * 7 6 5 11 11 N 1.30837 * 108.20276 * 359.97438 * 6 5 4 12 12 N 1.34950 * 126.12688 * 274.68636 * 4 3 2 13 13 H 0.97001 * 126.03507 * 0.03260 * 12 4 3 14 14 C 1.34784 * 119.99864 * 180.27290 * 2 1 3 15 15 O 1.21579 * 120.00114 * 179.72787 * 14 2 1 16 16 N 1.34777 * 119.99908 * 359.72514 * 14 2 1 17 17 C 1.46496 * 120.00258 * 179.97438 * 16 14 2 18 18 C 1.50699 * 109.47313 * 180.02562 * 17 16 14 19 19 O 1.21282 * 120.00041 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99618 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99526 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00463 * 359.97438 * 21 20 18 23 23 C 1.38959 * 120.00019 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99541 * 359.97438 * 23 21 20 25 25 Si 1.86790 * 120.00052 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47706 * 59.99728 * 25 23 21 27 27 H 1.48506 * 109.47148 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47092 * 299.99754 * 25 23 21 29 29 H 1.09000 * 109.47297 * 269.72722 * 1 2 3 30 30 H 1.09002 * 109.47192 * 29.72648 * 1 2 3 31 31 H 1.08996 * 109.47342 * 149.72358 * 1 2 3 32 32 H 1.09003 * 109.47006 * 30.27410 * 3 2 1 33 33 H 1.09004 * 109.47665 * 150.27102 * 3 2 1 34 34 H 1.07999 * 126.03563 * 359.93782 * 5 4 3 35 35 H 1.08993 * 109.47078 * 59.99961 * 8 7 6 36 36 H 1.09000 * 109.46825 * 180.02562 * 8 7 6 37 37 H 1.09002 * 109.46690 * 299.99768 * 8 7 6 38 38 H 1.08991 * 109.47567 * 59.99658 * 9 7 6 39 39 H 1.09006 * 109.46856 * 180.02562 * 9 7 6 40 40 H 1.09002 * 109.46958 * 299.99709 * 9 7 6 41 41 H 1.08999 * 109.47033 * 59.99961 * 10 7 6 42 42 H 1.08992 * 109.47311 * 179.97438 * 10 7 6 43 43 H 1.09004 * 109.46959 * 300.00140 * 10 7 6 44 44 H 0.96999 * 120.00047 * 0.02562 * 16 14 2 45 45 H 1.09000 * 109.47024 * 300.00478 * 17 16 14 46 46 H 1.09004 * 109.46875 * 60.00324 * 17 16 14 47 47 H 0.96996 * 120.00263 * 359.97438 * 20 18 17 48 48 H 0.97002 * 119.99680 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4428 1.7070 -1.4207 5 6 1.6748 2.5614 -2.1360 6 6 2.2505 2.6996 -3.4032 7 6 1.7238 3.5583 -4.5241 8 6 2.0230 5.0285 -4.2240 9 6 2.4019 3.1572 -5.8356 10 6 0.2119 3.3610 -4.6505 11 7 3.3257 1.9554 -3.4470 12 7 3.4710 1.3226 -2.2057 13 1 4.1836 0.7141 -1.9553 14 6 2.1388 -1.1673 -0.0056 15 8 3.3546 -1.1673 -0.0106 16 7 1.4649 -2.3345 -0.0055 17 6 2.1973 -3.6032 -0.0121 18 6 1.2179 -4.7486 -0.0113 19 8 0.0256 -4.5269 -0.0062 20 7 1.6672 -6.0192 -0.0162 21 6 0.7763 -7.0612 -0.0160 22 1 -0.2855 -6.8639 -0.0114 23 6 1.2394 -8.3714 -0.0216 24 7 2.5313 -8.6115 -0.0276 25 14 0.0255 -9.7911 -0.0220 26 1 -0.8324 -9.7087 -1.2313 27 1 0.7679 -11.0772 -0.0278 28 1 -0.8242 -9.7162 1.1937 29 1 -0.3634 -0.0049 1.0276 30 1 -0.3634 0.8924 -0.5096 31 1 -0.3634 -0.8874 -0.5181 32 1 1.6106 2.0271 0.5181 33 1 3.1521 1.1371 0.5096 34 1 0.7759 3.0496 -1.7896 35 1 3.1000 5.1690 -4.1339 36 1 1.6416 5.6496 -5.0345 37 1 1.5398 5.3141 -3.2896 38 1 2.1889 2.1099 -6.0494 39 1 2.0213 3.7787 -6.6463 40 1 3.4791 3.2978 -5.7455 41 1 -0.2712 3.6466 -3.7162 42 1 -0.1691 3.9824 -5.4609 43 1 -0.0012 2.3135 -4.8643 44 1 0.4949 -2.3344 -0.0019 45 1 2.8199 -3.6586 -0.9051 46 1 2.8279 -3.6633 0.8749 47 1 2.6208 -6.1965 -0.0207 48 1 2.8546 -9.5260 -0.0311 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358268978.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:10 Heat of formation + Delta-G solvation = -23.761763 kcal Electronic energy + Delta-G solvation = -28913.713576 eV Core-core repulsion = 24811.210727 eV Total energy + Delta-G solvation = -4102.502849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.39412 -41.30700 -40.07926 -37.77910 -36.69918 -36.28359 -35.39832 -33.40153 -32.27874 -31.38637 -29.45731 -28.57235 -28.05396 -27.85404 -26.88910 -25.72623 -23.48651 -21.82442 -21.39224 -21.02333 -20.14031 -19.29636 -19.21316 -18.45663 -17.64916 -17.34644 -16.94424 -16.55991 -16.17132 -15.96258 -15.76859 -15.70211 -15.17888 -15.13538 -14.90324 -14.55332 -14.51165 -14.32169 -14.01890 -13.78958 -13.55239 -13.53550 -13.35077 -13.05320 -12.95546 -12.91155 -12.86793 -12.51370 -12.48577 -12.14762 -12.09100 -11.91815 -11.89161 -11.57815 -11.43581 -11.30342 -10.58544 -10.36153 -10.30813 -10.11812 -9.72694 -9.56280 -8.52462 -6.02902 0.77897 1.36877 1.41544 1.51671 1.57430 1.86268 1.91391 1.93685 2.05648 2.27389 2.86627 3.14562 3.14789 3.52826 3.69837 3.95463 4.05440 4.11957 4.19019 4.24196 4.33793 4.38322 4.41320 4.53857 4.58535 4.70479 4.79375 4.81468 4.84354 4.90449 4.94934 4.98620 5.07635 5.12428 5.19783 5.26143 5.28983 5.36636 5.39060 5.48364 5.51343 5.77457 5.77648 5.90045 6.35117 6.45622 6.77776 6.82445 7.01388 7.36927 7.44725 7.91739 8.64136 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018589 B = 0.002035 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.915253 B =13758.483431 C =14126.575868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.621 5.621 3 C 0.194 3.806 4 C 0.068 3.932 5 C -0.255 4.255 6 C 0.078 3.922 7 C 0.009 3.991 8 C -0.130 4.130 9 C -0.134 4.134 10 C -0.133 4.133 11 N -0.327 5.327 12 N -0.474 5.474 13 H 0.437 0.563 14 C 0.702 3.298 15 O -0.626 6.626 16 N -0.724 5.724 17 C 0.141 3.859 18 C 0.433 3.567 19 O -0.623 6.623 20 N -0.559 5.559 21 C -0.338 4.338 22 H 0.087 0.913 23 C -0.012 4.012 24 N -0.916 5.916 25 Si 0.998 3.002 26 H -0.270 1.270 27 H -0.272 1.272 28 H -0.269 1.269 29 H 0.077 0.923 30 H 0.105 0.895 31 H 0.056 0.944 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.174 0.826 35 H 0.042 0.958 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.410 0.590 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.399 0.601 48 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.374 27.012 -3.739 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.358 5.358 3 C 0.070 3.930 4 C -0.063 4.063 5 C -0.285 4.285 6 C -0.088 4.088 7 C 0.006 3.994 8 C -0.188 4.188 9 C -0.192 4.192 10 C -0.191 4.191 11 N -0.150 5.150 12 N -0.181 5.181 13 H 0.281 0.719 14 C 0.403 3.597 15 O -0.507 6.507 16 N -0.383 5.383 17 C 0.013 3.987 18 C 0.220 3.780 19 O -0.512 6.512 20 N -0.194 5.194 21 C -0.467 4.467 22 H 0.105 0.895 23 C -0.212 4.212 24 N -0.556 5.556 25 Si 0.821 3.179 26 H -0.195 1.195 27 H -0.197 1.197 28 H -0.193 1.193 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.166 0.834 33 H 0.107 0.893 34 H 0.191 0.809 35 H 0.061 0.939 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.060 0.940 44 H 0.250 0.750 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.233 0.767 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.212 26.545 -4.426 27.002 hybrid contribution -0.217 -1.510 0.516 1.611 sum -2.428 25.035 -3.909 25.454 Atomic orbital electron populations 1.22017 0.77221 1.04267 1.03479 1.47017 1.07837 1.03435 1.77466 1.20092 0.99457 0.84685 0.88760 1.21941 0.90335 0.97787 0.96206 1.21379 1.05384 1.07791 0.93928 1.22694 0.92889 0.96573 0.96663 1.19158 0.96246 0.93793 0.90159 1.21804 1.01238 0.92682 1.03068 1.21766 1.00194 1.00783 0.96443 1.21836 0.92202 1.01565 1.03468 1.77252 1.22025 1.14398 1.01371 1.46498 1.23264 1.38612 1.09768 0.71866 1.15980 0.84972 0.81039 0.77716 1.90848 1.12743 1.86958 1.60193 1.44874 1.11103 1.03440 1.78865 1.20575 0.92906 0.81398 1.03868 1.20386 0.89440 0.84564 0.83634 1.90458 1.18008 1.84634 1.58050 1.41835 1.09881 1.04321 1.63368 1.19707 0.91089 0.85386 1.50508 0.89471 1.26159 0.98505 1.00824 0.95757 1.69678 1.13825 1.22930 1.49146 0.84911 0.77508 0.76335 0.79141 1.19507 1.19677 1.19349 0.90404 0.87668 0.92486 0.83374 0.89281 0.80907 0.93855 0.90109 0.91244 0.94324 0.90350 0.93527 0.90808 0.90226 0.93984 0.75029 0.89553 0.88843 0.76738 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.12 10.20 127.77 1.30 2.42 16 2 N -0.62 -13.31 2.86 -869.35 -2.48 -15.79 16 3 C 0.19 3.27 5.95 85.63 0.51 3.78 16 4 C 0.07 1.40 6.79 41.40 0.28 1.69 16 5 C -0.25 -4.64 10.01 21.99 0.22 -4.42 16 6 C 0.08 1.70 5.66 43.10 0.24 1.94 16 7 C 0.01 0.14 0.96 -52.93 -0.05 0.09 16 8 C -0.13 -1.57 8.46 71.98 0.61 -0.96 16 9 C -0.13 -2.36 8.03 71.98 0.58 -1.79 16 10 C -0.13 -1.65 8.20 71.98 0.59 -1.06 16 11 N -0.33 -8.97 12.02 -47.38 -0.57 -9.54 16 12 N -0.47 -12.21 7.36 -48.00 -0.35 -12.56 16 13 H 0.44 11.54 8.96 -213.33 -1.91 9.63 16 14 C 0.70 21.50 8.28 179.05 1.48 22.98 16 15 O -0.63 -22.36 15.92 -3.96 -0.06 -22.42 16 16 N -0.72 -23.95 5.39 -482.30 -2.60 -26.55 16 17 C 0.14 5.23 6.15 85.63 0.53 5.75 16 18 C 0.43 20.01 7.85 87.66 0.69 20.70 16 19 O -0.62 -31.99 15.24 -3.04 -0.05 -32.04 16 20 N -0.56 -28.14 5.29 -306.99 -1.62 -29.76 16 21 C -0.34 -18.57 9.68 84.04 0.81 -17.76 16 22 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -48.77 13.05 21.67 0.28 -48.49 16 25 Si 1.00 41.67 29.55 68.60 2.03 43.69 16 26 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 27 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 28 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 1.03 8.07 -2.39 -0.02 1.01 16 31 H 0.06 1.10 6.37 -2.39 -0.02 1.08 16 32 H 0.15 1.23 8.07 -2.39 -0.02 1.21 16 33 H 0.09 1.71 7.42 -2.38 -0.02 1.70 16 34 H 0.17 1.98 7.71 -2.91 -0.02 1.95 16 35 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.05 0.93 8.08 -2.39 -0.02 0.92 16 41 H 0.07 0.72 7.53 -2.39 -0.02 0.70 16 42 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 44 H 0.41 13.34 5.17 -92.71 -0.48 12.86 16 45 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 46 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 47 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -71.45 401.89 0.71 -70.74 By element: Atomic # 1 Polarization: 51.62 SS G_CDS: -2.12 Total: 49.50 kcal Atomic # 6 Polarization: 24.96 SS G_CDS: 8.26 Total: 33.22 kcal Atomic # 7 Polarization: -135.34 SS G_CDS: -7.35 Total: -142.69 kcal Atomic # 8 Polarization: -54.35 SS G_CDS: -0.11 Total: -54.46 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Total: -71.45 0.71 -70.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358268978.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.980 kcal (2) G-P(sol) polarization free energy of solvation -71.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds