Wall clock time and date at job start Tue Mar 31 2020 20:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21354 * 120.00449 * 0.02562 * 14 13 3 16 16 C 1.49345 * 119.99436 * 179.97438 * 14 13 3 17 17 O 1.21380 * 120.00655 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99791 * 180.02562 * 16 14 13 19 19 C 1.39926 * 120.00228 * 180.02562 * 18 16 14 20 20 C 1.40465 * 125.98085 * 359.71755 * 19 18 16 21 21 C 1.35208 * 107.86877 * 179.82595 * 20 19 18 22 22 N 1.34987 * 107.87849 * 0.43125 * 21 20 19 23 23 C 1.46494 * 125.97546 * 179.72438 * 22 21 20 24 24 C 1.53010 * 109.47003 * 124.97300 * 23 22 21 25 25 N 1.46898 * 109.46640 * 179.97438 * 24 23 22 26 26 C 1.46900 * 111.00052 * 66.05034 * 25 24 23 27 27 C 1.46903 * 110.99600 * 190.00229 * 25 24 23 28 28 N 1.31277 * 125.98525 * 180.02562 * 19 18 16 29 29 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 31 31 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 32 32 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 33 33 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 34 34 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 35 35 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 36 36 H 0.96998 * 119.99716 * 0.02562 * 18 16 14 37 37 H 1.07999 * 126.06333 * 359.96377 * 20 19 18 38 38 H 1.08008 * 126.06196 * 180.13921 * 21 20 19 39 39 H 1.08999 * 109.47435 * 244.97544 * 23 22 21 40 40 H 1.09007 * 109.47062 * 4.98139 * 23 22 21 41 41 H 1.08990 * 109.47326 * 300.00114 * 24 23 22 42 42 H 1.08999 * 109.46875 * 60.00553 * 24 23 22 43 43 H 1.09007 * 109.47075 * 59.99843 * 26 25 24 44 44 H 1.09004 * 109.46885 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47420 * 299.99786 * 26 25 24 46 46 H 1.09002 * 109.47369 * 60.00272 * 27 25 24 47 47 H 1.09001 * 109.47021 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.47223 * 299.99972 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3316 2.6432 17 8 0.8151 3.3638 3.5767 18 7 -1.1775 3.8982 2.7585 19 6 -1.5477 4.5238 3.9541 20 6 -0.7562 4.6297 5.1096 21 6 -1.4682 5.3050 6.0398 22 7 -2.6688 5.6087 5.5027 23 6 -3.7521 6.3334 6.1714 24 6 -4.1566 7.5415 5.3239 25 7 -5.2434 8.2679 5.9942 26 6 -4.7793 8.8643 7.2539 27 6 -5.8185 9.2891 5.1086 28 7 -2.6977 5.1096 4.1942 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0607 -2.9502 35 1 2.2720 2.1231 1.9978 36 1 -1.7971 3.8722 2.0126 37 1 0.2445 4.2425 5.2324 38 1 -1.1370 5.5529 7.0375 39 1 -4.6099 5.6723 6.2943 40 1 -3.4121 6.6735 7.1496 41 1 -3.2989 8.2026 5.2010 42 1 -4.4966 7.2016 4.3457 43 1 -3.9674 9.5620 7.0482 44 1 -5.6035 9.3964 7.7292 45 1 -4.4227 8.0777 7.9188 46 1 -6.2174 8.8112 4.2138 47 1 -6.6204 9.8121 5.6298 48 1 -5.0442 10.0021 4.8252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439559904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:26 Heat of formation + Delta-G solvation = 27.177213 kcal Electronic energy + Delta-G solvation = -28607.858853 eV Core-core repulsion = 24507.564884 eV Total energy + Delta-G solvation = -4100.293969 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53043 -40.15712 -38.35268 -38.00896 -35.58436 -34.91303 -32.94443 -32.40081 -30.99720 -30.25376 -28.77174 -28.11056 -27.30501 -25.42329 -24.16929 -22.97300 -21.83891 -21.72013 -20.66442 -19.93288 -19.46359 -18.29572 -17.57524 -16.60113 -16.36873 -16.14019 -15.85009 -15.66497 -15.54942 -15.15891 -15.04710 -14.62583 -14.30062 -14.10673 -13.77131 -13.48952 -13.28141 -13.08686 -12.93528 -12.74720 -12.54361 -12.21131 -12.16860 -12.06582 -11.62657 -11.58626 -11.32455 -11.17688 -10.99054 -10.92014 -10.85570 -10.71186 -10.35132 -10.26807 -9.70117 -9.14235 -9.07607 -8.96803 -8.96783 -8.57226 -8.34576 -8.04350 -6.17529 -4.27225 1.42001 1.90949 1.95679 2.78765 2.87741 3.23804 3.30872 3.33723 3.49324 3.73748 4.04819 4.16021 4.32721 4.47266 4.59443 4.67129 4.80197 4.82751 4.95570 5.06285 5.08294 5.14011 5.15248 5.33500 5.38411 5.42175 5.49383 5.54083 5.68271 6.06256 6.32291 6.37279 6.37387 6.41706 6.55889 6.69103 6.87971 6.90861 6.95575 7.08092 7.14304 7.27368 7.46164 7.61741 7.71638 7.79078 7.90595 8.07977 8.42508 8.60915 8.85092 9.39507 10.87824 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025421 B = 0.001883 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.188479 B =14866.336622 C =15143.013584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.056 0.944 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.904 3.096 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.665 5.665 14 C 0.499 3.501 15 O -0.526 6.526 16 C 0.517 3.483 17 O -0.499 6.499 18 N -0.615 5.615 19 C 0.302 3.698 20 C -0.264 4.264 21 C 0.061 3.939 22 N -0.369 5.369 23 C 0.144 3.856 24 C 0.042 3.958 25 N -0.546 5.546 26 C 0.016 3.984 27 C 0.025 3.975 28 N -0.318 5.318 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.266 0.734 35 H 0.402 0.598 36 H 0.427 0.573 37 H 0.174 0.826 38 H 0.177 0.823 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.041 0.959 42 H 0.092 0.908 43 H 0.028 0.972 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.071 0.929 48 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.510 13.898 18.078 27.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.074 0.926 5 C -0.575 4.575 6 H 0.083 0.917 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.314 5.314 14 C 0.277 3.723 15 O -0.404 6.404 16 C 0.298 3.702 17 O -0.371 6.371 18 N -0.265 5.265 19 C 0.046 3.954 20 C -0.294 4.294 21 C -0.084 4.084 22 N -0.154 5.154 23 C 0.022 3.978 24 C -0.087 4.087 25 N -0.270 5.270 26 C -0.132 4.132 27 C -0.123 4.123 28 N -0.148 5.148 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.237 0.763 36 H 0.265 0.735 37 H 0.191 0.809 38 H 0.194 0.806 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.059 0.941 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -16.002 13.779 17.545 27.454 hybrid contribution 2.290 0.411 0.091 2.328 sum -13.712 14.191 17.636 26.465 Atomic orbital electron populations 1.21865 0.98277 0.98480 1.01079 1.21970 0.92669 0.99348 1.02810 1.19043 0.94820 0.89420 0.80045 0.92647 1.21200 0.90266 1.39439 1.06584 0.91723 1.24873 0.98821 0.94627 0.95241 1.69882 1.35256 1.37397 1.09324 0.86405 0.84546 0.78563 0.77369 1.20470 1.21058 1.19771 1.46449 1.13263 1.52444 1.19290 1.19418 0.84624 0.81554 0.86709 1.90759 1.51105 1.59306 1.39279 1.20988 0.80810 0.78586 0.89773 1.90650 1.50509 1.56108 1.39822 1.42369 1.17170 1.53482 1.13479 1.19166 0.92678 0.95658 0.87900 1.21915 1.04304 1.11151 0.92068 1.22591 0.85981 0.99723 1.00122 1.48109 1.12648 1.44978 1.09683 1.21610 0.88737 0.93067 0.94361 1.22386 0.93078 0.94461 0.98728 1.61913 1.31753 1.27725 1.05592 1.22518 0.99817 0.98963 0.91920 1.22390 0.99078 0.93638 0.97172 1.77364 1.19339 1.21666 0.96429 0.95440 0.94592 0.92898 0.87822 0.94612 0.92438 0.76317 0.73482 0.80865 0.80627 0.88874 0.88616 0.94067 0.88976 0.95321 0.90970 0.91134 0.90931 0.90999 0.95404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -3.03 5.45 -26.73 -0.15 -3.18 16 3 C 0.27 6.51 2.24 -69.08 -0.15 6.36 16 4 H 0.06 1.53 7.58 -51.93 -0.39 1.13 16 5 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.33 16 9 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 13 N -0.67 -13.82 5.01 -55.40 -0.28 -14.09 16 14 C 0.50 9.74 6.45 -11.64 -0.08 9.67 16 15 O -0.53 -11.18 13.61 5.49 0.07 -11.11 16 16 C 0.52 8.85 7.85 -11.63 -0.09 8.76 16 17 O -0.50 -8.86 13.60 5.47 0.07 -8.78 16 18 N -0.61 -9.39 5.43 -11.58 -0.06 -9.46 16 19 C 0.30 4.49 8.10 -154.55 -1.25 3.24 16 20 C -0.26 -3.58 9.60 -39.82 -0.38 -3.96 16 21 C 0.06 0.62 11.43 -17.24 -0.20 0.43 16 22 N -0.37 -3.96 3.68 -61.38 -0.23 -4.19 16 23 C 0.14 1.05 6.43 -4.04 -0.03 1.02 16 24 C 0.04 0.33 5.14 -3.82 -0.02 0.31 16 25 N -0.55 -3.64 5.02 -251.25 -1.26 -4.90 16 26 C 0.02 0.08 9.32 60.06 0.56 0.64 16 27 C 0.03 0.15 9.57 60.07 0.57 0.72 16 28 N -0.32 -4.41 12.44 31.41 0.39 -4.02 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 31 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 32 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 33 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.40 7.78 8.01 -40.82 -0.33 7.45 16 36 H 0.43 6.08 8.29 -40.82 -0.34 5.74 16 37 H 0.17 2.51 5.91 -52.49 -0.31 2.20 16 38 H 0.18 1.04 8.06 -52.48 -0.42 0.62 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.44 6.48 -51.93 -0.34 0.11 16 41 H 0.04 0.35 8.12 -51.93 -0.42 -0.08 16 42 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 43 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 45 H 0.07 0.26 6.47 -51.93 -0.34 -0.07 16 46 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 47 H 0.07 0.34 8.12 -51.93 -0.42 -0.09 16 48 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -30.12 392.62 -8.29 -38.40 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -7.23 Total: 11.40 kcal Atomic # 6 Polarization: 10.16 SS G_CDS: -1.29 Total: 8.87 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.81 Total: -59.98 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.15 Total: -19.89 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.12 -8.29 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439559904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.581 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds