Wall clock time and date at job start Tue Mar 31 2020 20:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47256 * 90.00491 * 9 7 5 11 11 H 1.48506 * 109.46930 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47104 * 330.00193 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21354 * 120.00449 * 0.02562 * 14 13 3 16 16 C 1.49345 * 119.99436 * 179.97438 * 14 13 3 17 17 O 1.21380 * 120.00655 * 0.02562 * 16 14 13 18 18 N 1.34780 * 119.99791 * 180.02562 * 16 14 13 19 19 C 1.39926 * 120.00228 * 180.02562 * 18 16 14 20 20 C 1.40465 * 125.98085 * 359.71755 * 19 18 16 21 21 C 1.35208 * 107.86877 * 179.82595 * 20 19 18 22 22 N 1.34987 * 107.87849 * 0.43125 * 21 20 19 23 23 C 1.46494 * 125.97546 * 179.72438 * 22 21 20 24 24 C 1.53010 * 109.47003 * 124.97300 * 23 22 21 25 25 N 1.46898 * 109.46640 * 179.97438 * 24 23 22 26 26 C 1.46900 * 111.00052 * 66.05034 * 25 24 23 27 27 C 1.46903 * 110.99600 * 190.00229 * 25 24 23 28 28 N 1.31277 * 125.98525 * 180.02562 * 19 18 16 29 29 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 31 31 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 32 32 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 33 33 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 34 34 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 35 35 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 36 36 H 0.96998 * 119.99716 * 0.02562 * 18 16 14 37 37 H 1.07999 * 126.06333 * 359.96377 * 20 19 18 38 38 H 1.08008 * 126.06196 * 180.13921 * 21 20 19 39 39 H 1.08999 * 109.47435 * 244.97544 * 23 22 21 40 40 H 1.09007 * 109.47062 * 4.98139 * 23 22 21 41 41 H 1.08990 * 109.47326 * 300.00114 * 24 23 22 42 42 H 1.08999 * 109.46875 * 60.00553 * 24 23 22 43 43 H 1.09007 * 109.47075 * 59.99843 * 26 25 24 44 44 H 1.09004 * 109.46885 * 179.97438 * 26 25 24 45 45 H 1.08994 * 109.47420 * 299.99786 * 26 25 24 46 46 H 1.09002 * 109.47369 * 60.00272 * 27 25 24 47 47 H 1.09001 * 109.47021 * 180.02562 * 27 25 24 48 48 H 1.09005 * 109.47223 * 299.99972 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5539 -0.3523 -0.7597 11 1 6.3836 0.9211 -2.8164 12 1 6.5576 2.0717 -0.6888 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3400 2.6319 0.4337 16 6 0.0400 3.3316 2.6432 17 8 0.8151 3.3638 3.5767 18 7 -1.1775 3.8982 2.7585 19 6 -1.5477 4.5238 3.9541 20 6 -0.7562 4.6297 5.1096 21 6 -1.4682 5.3050 6.0398 22 7 -2.6688 5.6087 5.5027 23 6 -3.7521 6.3334 6.1714 24 6 -4.1566 7.5415 5.3239 25 7 -5.2434 8.2679 5.9942 26 6 -4.7793 8.8643 7.2539 27 6 -5.8185 9.2891 5.1086 28 7 -2.6977 5.1096 4.1942 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8292 -0.0607 -2.9502 35 1 2.2720 2.1231 1.9978 36 1 -1.7971 3.8722 2.0126 37 1 0.2445 4.2425 5.2324 38 1 -1.1370 5.5529 7.0375 39 1 -4.6099 5.6723 6.2943 40 1 -3.4121 6.6735 7.1496 41 1 -3.2989 8.2026 5.2010 42 1 -4.4966 7.2016 4.3457 43 1 -3.9674 9.5620 7.0482 44 1 -5.6035 9.3964 7.7292 45 1 -4.4227 8.0777 7.9188 46 1 -6.2174 8.8112 4.2138 47 1 -6.6204 9.8121 5.6298 48 1 -5.0442 10.0021 4.8252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439559904.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:25 Heat of formation + Delta-G solvation = 5.448002 kcal Electronic energy + Delta-G solvation = -28608.801102 eV Core-core repulsion = 24507.564884 eV Total energy + Delta-G solvation = -4101.236218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.57047 -41.54577 -39.78166 -38.63954 -37.24050 -36.24321 -34.33905 -33.73165 -32.81938 -31.20617 -29.63109 -29.11980 -28.51104 -26.70687 -25.22326 -24.61180 -22.90764 -22.52976 -21.78108 -21.34879 -21.05756 -19.77460 -18.53522 -18.10091 -17.76050 -17.30992 -16.96134 -16.91174 -16.59915 -16.36688 -16.01623 -15.91571 -15.48918 -15.21340 -14.97275 -14.64040 -14.59338 -14.23234 -13.97900 -13.87951 -13.50844 -13.40993 -13.18730 -13.12354 -12.96494 -12.73564 -12.66646 -12.62422 -12.55418 -12.19785 -12.10939 -12.08384 -11.92808 -11.65768 -11.58712 -11.08905 -10.65036 -10.53007 -9.96045 -9.84462 -9.47451 -9.33593 -8.16990 -6.33837 0.10117 0.85346 0.93795 1.46863 1.47535 1.57589 1.70454 1.73377 2.28503 2.40814 2.68643 3.00315 3.12971 3.46276 3.54361 3.90593 3.92959 4.11182 4.22469 4.30991 4.45853 4.49888 4.50614 4.56133 4.61884 4.64684 4.72437 4.76897 4.79733 4.84353 4.94852 4.98037 5.03812 5.04561 5.23845 5.36193 5.39986 5.57392 5.58384 5.68064 5.78288 5.84841 5.89705 5.96788 6.11485 6.12518 6.43832 6.68105 6.71124 6.76911 7.10165 7.37809 8.88179 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.025421 B = 0.001883 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.188479 B =14866.336622 C =15143.013584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.123 4.123 3 C 0.275 3.725 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.667 5.667 14 C 0.501 3.499 15 O -0.545 6.545 16 C 0.527 3.473 17 O -0.505 6.505 18 N -0.606 5.606 19 C 0.276 3.724 20 C -0.296 4.296 21 C 0.089 3.911 22 N -0.361 5.361 23 C 0.141 3.859 24 C 0.050 3.950 25 N -0.553 5.553 26 C 0.013 3.987 27 C 0.024 3.976 28 N -0.339 5.339 29 H 0.049 0.951 30 H 0.040 0.960 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.267 0.733 35 H 0.410 0.590 36 H 0.429 0.571 37 H 0.162 0.838 38 H 0.226 0.774 39 H 0.096 0.904 40 H 0.134 0.866 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.694 14.889 20.982 29.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C 0.173 3.827 4 H 0.034 0.966 5 C -0.590 4.590 6 H 0.088 0.912 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.316 5.316 14 C 0.281 3.719 15 O -0.424 6.424 16 C 0.308 3.692 17 O -0.377 6.377 18 N -0.256 5.256 19 C 0.022 3.978 20 C -0.326 4.326 21 C -0.058 4.058 22 N -0.145 5.145 23 C 0.020 3.980 24 C -0.079 4.079 25 N -0.277 5.277 26 C -0.134 4.134 27 C -0.124 4.124 28 N -0.170 5.170 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.246 0.754 36 H 0.268 0.732 37 H 0.179 0.821 38 H 0.243 0.757 39 H 0.114 0.886 40 H 0.152 0.848 41 H 0.052 0.948 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.103 0.897 48 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -16.228 14.796 20.474 30.024 hybrid contribution 2.196 0.219 -0.726 2.323 sum -14.032 15.015 19.748 28.501 Atomic orbital electron populations 1.21724 0.96676 0.99697 1.00413 1.21825 0.94036 0.98544 1.01802 1.18677 0.94188 0.89592 0.80247 0.96632 1.21513 0.91112 1.39460 1.06917 0.91196 1.25689 1.03171 0.94236 0.94910 1.70014 1.36984 1.37998 1.09766 0.85384 0.79231 0.78786 0.77175 1.19737 1.21067 1.19209 1.46199 1.14095 1.52864 1.18467 1.19761 0.83850 0.80878 0.87454 1.90747 1.51541 1.59774 1.40357 1.20239 0.81517 0.78971 0.88486 1.90658 1.50889 1.56656 1.39546 1.42160 1.16362 1.52880 1.14161 1.19338 0.93680 0.96859 0.87927 1.21944 1.04486 1.13447 0.92765 1.23215 0.84632 0.96837 1.01074 1.48443 1.13584 1.43907 1.08611 1.21931 0.88189 0.92493 0.95351 1.22220 0.93045 0.94657 0.98005 1.61948 1.31295 1.28244 1.06241 1.22614 1.00206 0.99508 0.91090 1.22425 0.99370 0.93480 0.97165 1.77305 1.19138 1.21988 0.98556 0.93224 0.94145 0.94577 0.90252 0.93991 0.92410 0.75400 0.73218 0.82067 0.75729 0.88607 0.84847 0.94838 0.91314 0.95409 0.90108 0.89621 0.91612 0.89673 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -5.89 5.45 30.59 0.17 -5.72 16 3 C 0.28 13.76 2.24 44.24 0.10 13.86 16 4 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 5 C -0.55 -28.83 8.73 25.60 0.22 -28.61 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -50.47 11.29 21.45 0.24 -50.22 16 9 Si 0.97 41.67 29.54 68.60 2.03 43.70 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.67 -28.16 5.01 -447.55 -2.24 -30.40 16 14 C 0.50 19.94 6.45 87.24 0.56 20.51 16 15 O -0.55 -23.81 13.61 -3.26 -0.04 -23.85 16 16 C 0.53 18.20 7.85 87.24 0.69 18.89 16 17 O -0.50 -17.88 13.60 -3.34 -0.05 -17.93 16 18 N -0.61 -18.72 5.43 -308.89 -1.68 -20.40 16 19 C 0.28 8.12 8.10 133.40 1.08 9.20 16 20 C -0.30 -7.65 9.60 22.11 0.21 -7.44 16 21 C 0.09 1.53 11.43 83.51 0.95 2.48 16 22 N -0.36 -6.87 3.68 -348.10 -1.28 -8.15 16 23 C 0.14 1.63 6.43 86.38 0.56 2.19 16 24 C 0.05 0.69 5.14 86.31 0.44 1.14 16 25 N -0.55 -6.33 5.02 -948.82 -4.76 -11.09 16 26 C 0.01 0.09 9.32 127.69 1.19 1.28 16 27 C 0.02 0.25 9.57 127.69 1.22 1.47 16 28 N -0.34 -9.15 12.44 -54.53 -0.68 -9.83 16 29 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.04 1.67 5.64 -2.39 -0.01 1.66 16 31 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 32 H 0.08 4.22 5.95 -2.39 -0.01 4.20 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 35 H 0.41 15.97 8.01 -92.70 -0.74 15.23 16 36 H 0.43 12.53 8.29 -92.71 -0.77 11.76 16 37 H 0.16 4.56 5.91 -2.91 -0.02 4.54 16 38 H 0.23 1.46 8.06 -2.91 -0.02 1.43 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.13 0.59 6.48 -2.38 -0.02 0.57 16 41 H 0.03 0.51 8.12 -2.39 -0.02 0.49 16 42 H 0.07 1.28 8.06 -2.39 -0.02 1.26 16 43 H 0.03 0.20 8.14 -2.38 -0.02 0.18 16 44 H 0.08 0.42 8.12 -2.38 -0.02 0.41 16 45 H 0.09 0.30 6.47 -2.39 -0.02 0.29 16 46 H 0.07 0.76 8.12 -2.39 -0.02 0.74 16 47 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 48 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 Total: -1.00 -66.55 392.62 -0.52 -67.07 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.51 Total: 35.20 kcal Atomic # 6 Polarization: 17.45 SS G_CDS: 8.46 Total: 25.91 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -10.40 Total: -130.09 kcal Atomic # 8 Polarization: -41.69 SS G_CDS: -0.09 Total: -41.78 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -66.55 -0.52 -67.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439559904.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.514 kcal (2) G-P(sol) polarization free energy of solvation -66.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds