Wall clock time and date at job start Tue Mar 31 2020 20:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 C 1.52998 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47254 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47192 * 304.99789 * 5 4 3 7 7 N 1.46498 * 109.47347 * 64.99829 * 5 4 3 8 8 C 1.34777 * 119.99828 * 59.72186 * 7 5 4 9 9 N 1.34777 * 120.00128 * 180.27942 * 8 7 5 10 10 O 1.21593 * 119.99949 * 0.28071 * 8 7 5 11 11 C 1.50701 * 109.47333 * 185.00133 * 5 4 3 12 12 O 1.21293 * 119.99684 * 260.00559 * 11 5 4 13 13 N 1.34768 * 120.00269 * 79.99668 * 11 5 4 14 14 C 1.39474 * 120.00264 * 180.02562 * 13 11 5 15 15 C 1.36115 * 126.21377 * 359.68987 * 14 13 11 16 16 C 1.39754 * 107.82535 * 179.84717 * 15 14 13 17 17 C 1.50702 * 125.83813 * 180.14592 * 16 15 14 18 18 N 1.30848 * 108.32657 * 0.42366 * 16 15 14 19 19 N 1.35262 * 126.21836 * 180.02562 * 14 13 11 20 20 C 1.46497 * 126.04558 * 359.96028 * 19 14 13 21 21 C 1.50703 * 109.46986 * 90.00481 * 20 19 14 22 22 H 1.08005 * 120.00111 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00385 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99622 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00281 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47115 * 60.00009 * 25 23 21 27 27 H 1.48506 * 109.47140 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47326 * 299.99640 * 25 23 21 29 29 H 1.09007 * 109.46810 * 300.00098 * 1 2 3 30 30 H 1.08998 * 109.47703 * 59.99481 * 1 2 3 31 31 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46591 * 240.00306 * 2 1 3 33 33 H 1.08991 * 109.47495 * 120.00134 * 2 1 3 34 34 H 1.08993 * 109.47180 * 60.00314 * 3 2 1 35 35 H 1.09000 * 109.46784 * 300.00180 * 3 2 1 36 36 H 1.09007 * 109.47144 * 59.99710 * 4 3 2 37 37 H 1.09005 * 109.47257 * 300.00007 * 4 3 2 38 38 H 0.97001 * 120.00384 * 240.00632 * 7 5 4 39 39 H 0.97000 * 119.99549 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99887 * 180.02562 * 9 8 7 41 41 H 0.97005 * 120.00308 * 0.02562 * 13 11 5 42 42 H 1.07995 * 126.08693 * 359.97438 * 15 14 13 43 43 H 1.08997 * 109.47208 * 270.30364 * 17 16 15 44 44 H 1.09001 * 109.47247 * 30.29907 * 17 16 15 45 45 H 1.09002 * 109.47443 * 150.29924 * 17 16 15 46 46 H 1.09005 * 109.47164 * 209.99734 * 20 19 14 47 47 H 1.08998 * 109.47674 * 330.00534 * 20 19 14 48 48 H 0.97004 * 120.00018 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 7 3.6930 3.5393 1.2523 8 6 4.1134 3.0399 2.4314 9 7 3.7527 3.6385 3.5839 10 8 4.8181 2.0492 2.4555 11 6 5.5819 2.8869 -0.1245 12 8 6.2719 3.0392 0.8613 13 7 6.1583 2.7191 -1.3311 14 6 7.5483 2.7204 -1.4462 15 6 8.4392 2.8853 -0.4305 16 6 9.7250 2.8170 -0.9738 17 6 11.0153 2.9455 -0.2060 18 7 9.6168 2.6284 -2.2641 19 7 8.2557 2.5642 -2.5885 20 6 7.6972 2.3624 -3.9277 21 6 7.4868 3.6992 -4.5909 22 1 7.7432 4.6082 -4.0670 23 6 6.9662 3.7619 -5.8660 24 7 6.6536 2.6550 -6.5037 25 14 6.7048 5.4190 -6.6877 26 1 8.0049 6.1284 -6.7958 27 1 6.1387 5.2144 -8.0453 28 1 5.7636 6.2312 -5.8757 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.1308 4.3295 1.2331 39 1 3.1909 4.4290 3.5645 40 1 4.0556 3.2792 4.4324 41 1 5.6065 2.5976 -2.1196 42 1 8.1958 3.0393 0.6104 43 1 11.3131 3.9934 -0.1688 44 1 10.8735 2.5719 0.8081 45 1 11.7927 2.3642 -0.7019 46 1 8.3882 1.7660 -4.5235 47 1 6.7428 1.8418 -3.8487 48 1 6.2876 2.6991 -7.4010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520112269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:28 Heat of formation + Delta-G solvation = -2.654587 kcal Electronic energy + Delta-G solvation = -30086.994612 eV Core-core repulsion = 25985.407039 eV Total energy + Delta-G solvation = -4101.587573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.97181 -40.18722 -38.55236 -36.33464 -34.61338 -34.27914 -33.70502 -33.55853 -32.01933 -30.63917 -29.14756 -28.38967 -26.65601 -25.97131 -23.19478 -22.80507 -22.13779 -21.18751 -20.40119 -19.63145 -19.12293 -18.50902 -17.46064 -16.86844 -16.59328 -16.16995 -15.86028 -15.15650 -15.13281 -14.67657 -14.58825 -14.35698 -14.13425 -13.95135 -13.92864 -13.43566 -13.12621 -12.83176 -12.76598 -12.70083 -12.43699 -12.05786 -11.89733 -11.72335 -11.52804 -11.41175 -11.24373 -11.08063 -11.04479 -10.86262 -10.73989 -10.35020 -10.23853 -10.11194 -9.83470 -9.79924 -9.59697 -9.52068 -8.86987 -8.70656 -7.83622 -7.33025 -6.31801 -4.40209 2.37095 2.62321 3.02350 3.17237 3.19943 3.22727 3.28150 3.40098 3.69448 3.88126 4.24993 4.37719 4.55049 4.73868 4.77927 4.89721 4.99055 5.01330 5.14293 5.26921 5.44088 5.54813 5.58622 5.69957 5.71823 5.74341 5.90925 6.03539 6.09404 6.11082 6.21712 6.23621 6.28049 6.31157 6.40959 6.53461 6.60396 6.77257 6.88101 6.89327 7.09770 7.59241 7.62851 7.72659 7.82601 7.90685 8.02317 8.44266 8.66178 8.72527 8.77302 9.27047 10.75194 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.003843 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.254394 B = 7284.525279 C = 9314.116320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.111 4.111 4 C -0.137 4.137 5 C 0.162 3.838 6 H 0.114 0.886 7 N -0.731 5.731 8 C 0.710 3.290 9 N -0.872 5.872 10 O -0.561 6.561 11 C 0.503 3.497 12 O -0.480 6.480 13 N -0.642 5.642 14 C 0.306 3.694 15 C -0.295 4.295 16 C 0.050 3.950 17 C -0.061 4.061 18 N -0.288 5.288 19 N -0.346 5.346 20 C 0.257 3.743 21 C -0.540 4.540 22 H 0.064 0.936 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.906 3.094 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.400 0.600 39 H 0.392 0.608 40 H 0.413 0.587 41 H 0.413 0.587 42 H 0.160 0.840 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.114 0.647 15.695 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.149 4.149 4 C -0.176 4.176 5 C 0.051 3.949 6 H 0.132 0.868 7 N -0.388 5.388 8 C 0.409 3.591 9 N -0.440 5.440 10 O -0.436 6.436 11 C 0.286 3.714 12 O -0.350 6.350 13 N -0.290 5.290 14 C 0.084 3.916 15 C -0.327 4.327 16 C -0.115 4.115 17 C -0.120 4.120 18 N -0.113 5.113 19 N -0.132 5.132 20 C 0.140 3.860 21 C -0.578 4.578 22 H 0.082 0.918 23 C -0.136 4.136 24 N -0.528 5.528 25 Si 0.733 3.267 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.233 0.767 39 H 0.219 0.781 40 H 0.244 0.756 41 H 0.250 0.750 42 H 0.177 0.823 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.062 0.938 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.565 -0.371 14.873 18.844 hybrid contribution -1.405 1.635 -0.177 2.163 sum -12.970 1.264 14.696 19.641 Atomic orbital electron populations 1.21763 0.95996 1.01488 1.01608 1.21516 0.95633 0.96872 1.02312 1.21539 0.94343 0.97065 1.01951 1.22054 0.96185 0.94141 1.05224 1.20611 0.90883 0.96488 0.86900 0.86809 1.44664 1.56750 1.33334 1.04055 1.15844 0.79596 0.83201 0.80496 1.42963 1.58884 1.34460 1.07705 1.90986 1.39912 1.26874 1.85806 1.20865 0.90826 0.77381 0.82325 1.90689 1.63399 1.44779 1.36090 1.42797 1.03762 1.71440 1.11036 1.17919 0.82616 1.02184 0.88932 1.21256 0.89982 1.21393 1.00102 1.22012 0.95838 1.01763 0.91879 1.20007 0.91904 1.01929 0.98185 1.77333 0.93890 1.25875 1.14235 1.49313 1.02528 1.54341 1.06994 1.19588 0.93997 0.98410 0.74048 1.21314 1.43859 0.92071 1.00576 0.91813 1.24926 0.94763 0.97403 0.96551 1.69913 1.42446 1.26943 1.13470 0.86421 0.78816 0.83138 0.78341 1.19903 1.20916 1.20039 0.93009 0.92716 0.92901 0.91767 0.92038 0.92005 0.91852 0.90420 0.88430 0.76660 0.78080 0.75555 0.75035 0.82298 0.91426 0.91211 0.91607 0.92641 0.93837 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.11 -0.96 5.10 -26.73 -0.14 -1.10 16 4 C -0.14 -1.54 4.54 -26.73 -0.12 -1.66 16 5 C 0.16 1.85 3.01 -69.08 -0.21 1.64 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 N -0.73 -7.19 4.65 -59.81 -0.28 -7.46 16 8 C 0.71 8.77 7.60 -86.92 -0.66 8.11 16 9 N -0.87 -6.83 8.88 27.64 0.25 -6.58 16 10 O -0.56 -9.73 13.03 -18.17 -0.24 -9.97 16 11 C 0.50 8.32 6.78 -10.99 -0.07 8.24 16 12 O -0.48 -9.51 10.83 -17.90 -0.19 -9.71 16 13 N -0.64 -11.54 5.41 -11.46 -0.06 -11.60 16 14 C 0.31 6.72 7.66 -153.16 -1.17 5.55 16 15 C -0.30 -6.46 9.58 -39.78 -0.38 -6.84 16 16 C 0.05 1.06 7.21 -82.44 -0.59 0.47 16 17 C -0.06 -0.98 10.44 36.01 0.38 -0.61 16 18 N -0.29 -6.96 12.56 33.65 0.42 -6.54 16 19 N -0.35 -8.35 3.60 -61.57 -0.22 -8.57 16 20 C 0.26 6.51 6.01 -5.19 -0.03 6.48 16 21 C -0.54 -14.53 9.39 -34.44 -0.32 -14.85 16 22 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -24.22 13.29 55.43 0.74 -23.49 16 25 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.52 7.75 -51.93 -0.40 0.11 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 37 H 0.10 1.38 6.03 -51.93 -0.31 1.07 16 38 H 0.40 2.47 8.84 -40.82 -0.36 2.11 16 39 H 0.39 1.71 8.84 -40.82 -0.36 1.35 16 40 H 0.41 3.00 8.93 -40.82 -0.36 2.63 16 41 H 0.41 6.73 7.96 -40.82 -0.33 6.40 16 42 H 0.16 3.49 5.83 -52.49 -0.31 3.19 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 47 H 0.04 1.06 7.50 -51.93 -0.39 0.67 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -36.02 397.26 -9.28 -45.30 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -7.44 Total: 12.04 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -3.22 Total: 5.09 kcal Atomic # 7 Polarization: -65.08 SS G_CDS: 0.84 Total: -64.24 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.43 Total: -19.68 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.02 -9.28 -45.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520112269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.642 kcal (2) G-P(sol) polarization free energy of solvation -36.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds