Wall clock time and date at job start Tue Mar 31 2020 20:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47277 * 2 1 4 4 C 1.52998 * 109.47254 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.47254 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47192 * 304.99789 * 5 4 3 7 7 N 1.46498 * 109.47347 * 64.99829 * 5 4 3 8 8 C 1.34777 * 119.99828 * 59.72186 * 7 5 4 9 9 N 1.34777 * 120.00128 * 180.27942 * 8 7 5 10 10 O 1.21593 * 119.99949 * 0.28071 * 8 7 5 11 11 C 1.50701 * 109.47333 * 185.00133 * 5 4 3 12 12 O 1.21293 * 119.99684 * 260.00559 * 11 5 4 13 13 N 1.34768 * 120.00269 * 79.99668 * 11 5 4 14 14 C 1.39474 * 120.00264 * 180.02562 * 13 11 5 15 15 C 1.36115 * 126.21377 * 359.68987 * 14 13 11 16 16 C 1.39754 * 107.82535 * 179.84717 * 15 14 13 17 17 C 1.50702 * 125.83813 * 180.14592 * 16 15 14 18 18 N 1.30848 * 108.32657 * 0.42366 * 16 15 14 19 19 N 1.35262 * 126.21836 * 180.02562 * 14 13 11 20 20 C 1.46497 * 126.04558 * 359.96028 * 19 14 13 21 21 C 1.50703 * 109.46986 * 90.00481 * 20 19 14 22 22 H 1.08005 * 120.00111 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00385 * 180.02562 * 21 20 19 24 24 N 1.31517 * 119.99622 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00281 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47115 * 60.00009 * 25 23 21 27 27 H 1.48506 * 109.47140 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47326 * 299.99640 * 25 23 21 29 29 H 1.09007 * 109.46810 * 300.00098 * 1 2 3 30 30 H 1.08998 * 109.47703 * 59.99481 * 1 2 3 31 31 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46591 * 240.00306 * 2 1 3 33 33 H 1.08991 * 109.47495 * 120.00134 * 2 1 3 34 34 H 1.08993 * 109.47180 * 60.00314 * 3 2 1 35 35 H 1.09000 * 109.46784 * 300.00180 * 3 2 1 36 36 H 1.09007 * 109.47144 * 59.99710 * 4 3 2 37 37 H 1.09005 * 109.47257 * 300.00007 * 4 3 2 38 38 H 0.97001 * 120.00384 * 240.00632 * 7 5 4 39 39 H 0.97000 * 119.99549 * 359.97438 * 9 8 7 40 40 H 0.96996 * 119.99887 * 180.02562 * 9 8 7 41 41 H 0.97005 * 120.00308 * 0.02562 * 13 11 5 42 42 H 1.07995 * 126.08693 * 359.97438 * 15 14 13 43 43 H 1.08997 * 109.47208 * 270.30364 * 17 16 15 44 44 H 1.09001 * 109.47247 * 30.29907 * 17 16 15 45 45 H 1.09002 * 109.47443 * 150.29924 * 17 16 15 46 46 H 1.09005 * 109.47164 * 209.99734 * 20 19 14 47 47 H 1.08998 * 109.47674 * 330.00534 * 20 19 14 48 48 H 0.97004 * 120.00018 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6451 3.4245 -0.8413 7 7 3.6930 3.5393 1.2523 8 6 4.1134 3.0399 2.4314 9 7 3.7527 3.6385 3.5839 10 8 4.8181 2.0492 2.4555 11 6 5.5819 2.8869 -0.1245 12 8 6.2719 3.0392 0.8613 13 7 6.1583 2.7191 -1.3311 14 6 7.5483 2.7204 -1.4462 15 6 8.4392 2.8853 -0.4305 16 6 9.7250 2.8170 -0.9738 17 6 11.0153 2.9455 -0.2060 18 7 9.6168 2.6284 -2.2641 19 7 8.2557 2.5642 -2.5885 20 6 7.6972 2.3624 -3.9277 21 6 7.4868 3.6992 -4.5909 22 1 7.7432 4.6082 -4.0670 23 6 6.9662 3.7619 -5.8660 24 7 6.6536 2.6550 -6.5037 25 14 6.7048 5.4190 -6.6877 26 1 8.0049 6.1284 -6.7958 27 1 6.1387 5.2144 -8.0453 28 1 5.7636 6.2312 -5.8757 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8909 37 1 3.9337 0.9285 0.8891 38 1 3.1308 4.3295 1.2331 39 1 3.1909 4.4290 3.5645 40 1 4.0556 3.2792 4.4324 41 1 5.6065 2.5976 -2.1196 42 1 8.1958 3.0393 0.6104 43 1 11.3131 3.9934 -0.1688 44 1 10.8735 2.5719 0.8081 45 1 11.7927 2.3642 -0.7019 46 1 8.3882 1.7660 -4.5235 47 1 6.7428 1.8418 -3.8487 48 1 6.2876 2.6991 -7.4010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520112269.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:27 Heat of formation + Delta-G solvation = -28.948220 kcal Electronic energy + Delta-G solvation = -30088.134790 eV Core-core repulsion = 25985.407039 eV Total energy + Delta-G solvation = -4102.727750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47082 -41.44494 -39.81562 -37.21267 -36.22093 -35.54849 -35.18549 -34.39924 -33.81776 -31.51771 -30.76516 -29.93158 -27.83969 -27.62833 -24.78814 -24.00472 -23.28599 -22.10991 -21.53652 -21.20936 -20.43138 -19.48478 -18.88156 -18.54175 -17.97518 -17.53448 -16.80265 -16.62297 -16.46843 -16.14028 -15.77885 -15.59706 -15.37398 -15.19197 -14.94877 -14.60014 -14.43928 -14.25967 -14.06048 -14.00225 -13.58429 -13.51534 -13.38176 -13.13675 -12.91848 -12.77265 -12.68495 -12.27063 -12.20294 -12.03590 -11.88757 -11.77404 -11.66459 -11.46249 -11.44452 -11.17325 -10.79496 -10.74069 -10.42822 -9.94822 -9.61718 -9.03562 -8.34050 -6.51912 0.84076 1.30896 1.38519 1.41612 1.50129 1.64883 1.95223 2.08361 2.25116 2.36261 2.49573 2.96239 3.45296 3.67482 3.83144 3.84130 3.98110 4.15669 4.19672 4.28016 4.41758 4.54038 4.63308 4.72729 4.82748 4.84817 4.86659 4.87695 4.92621 4.94726 5.01850 5.04071 5.20475 5.22720 5.23607 5.33662 5.38212 5.49676 5.52643 5.53135 5.78648 5.96096 5.98492 6.14866 6.18867 6.33820 6.59395 7.01160 7.09352 7.20250 7.21540 7.86467 8.72343 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.008516 B = 0.003843 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3287.254394 B = 7284.525279 C = 9314.116320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.102 4.102 4 C -0.131 4.131 5 C 0.169 3.831 6 H 0.154 0.846 7 N -0.717 5.717 8 C 0.702 3.298 9 N -0.852 5.852 10 O -0.616 6.616 11 C 0.498 3.502 12 O -0.511 6.511 13 N -0.639 5.639 14 C 0.306 3.694 15 C -0.312 4.312 16 C 0.057 3.943 17 C -0.060 4.060 18 N -0.332 5.332 19 N -0.366 5.366 20 C 0.273 3.727 21 C -0.556 4.556 22 H 0.047 0.953 23 C 0.030 3.970 24 N -0.913 5.913 25 Si 0.969 3.031 26 H -0.281 1.281 27 H -0.272 1.272 28 H -0.261 1.261 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.421 0.579 39 H 0.412 0.588 40 H 0.417 0.583 41 H 0.421 0.579 42 H 0.159 0.841 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.025 0.975 47 H 0.049 0.951 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.136 2.462 16.019 22.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.139 4.139 4 C -0.170 4.170 5 C 0.059 3.941 6 H 0.171 0.829 7 N -0.375 5.375 8 C 0.400 3.600 9 N -0.422 5.422 10 O -0.494 6.494 11 C 0.284 3.716 12 O -0.383 6.383 13 N -0.288 5.288 14 C 0.083 3.917 15 C -0.344 4.344 16 C -0.108 4.108 17 C -0.118 4.118 18 N -0.157 5.157 19 N -0.152 5.152 20 C 0.154 3.846 21 C -0.594 4.594 22 H 0.065 0.935 23 C -0.172 4.172 24 N -0.551 5.551 25 Si 0.793 3.207 26 H -0.206 1.206 27 H -0.197 1.197 28 H -0.186 1.186 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.259 0.741 39 H 0.242 0.758 40 H 0.249 0.751 41 H 0.258 0.742 42 H 0.176 0.824 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.043 0.957 47 H 0.067 0.933 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.661 1.493 15.228 20.512 hybrid contribution -0.756 1.034 -0.167 1.292 sum -14.417 2.527 15.061 21.002 Atomic orbital electron populations 1.21735 0.94715 1.01854 1.02227 1.21524 0.96736 0.96879 1.01449 1.21486 0.92019 0.97211 1.03201 1.21973 0.98074 0.93460 1.03479 1.20711 0.87010 0.97555 0.88858 0.82880 1.44494 1.56395 1.33781 1.02865 1.16169 0.79261 0.82821 0.81774 1.42757 1.58234 1.34572 1.06609 1.90963 1.42426 1.29358 1.86703 1.21989 0.92900 0.75669 0.81092 1.90666 1.64693 1.46010 1.36941 1.43027 1.02219 1.71418 1.12156 1.18302 0.84456 1.00747 0.88206 1.21387 0.90495 1.22509 0.99987 1.22847 0.97681 0.99068 0.91201 1.20202 0.89586 1.03456 0.98572 1.77280 0.94277 1.28268 1.15886 1.49158 1.03018 1.56040 1.06971 1.19234 0.93299 0.97504 0.74575 1.21360 1.44838 0.91896 1.01346 0.93452 1.25673 0.93979 1.00898 0.96688 1.69991 1.42420 1.28796 1.13908 0.85442 0.78542 0.78842 0.77867 1.20637 1.19695 1.18593 0.92412 0.92005 0.92763 0.92306 0.93371 0.91266 0.89891 0.90850 0.91610 0.74146 0.75774 0.75086 0.74185 0.82401 0.89615 0.89075 0.90537 0.95715 0.93305 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.13 -2.11 5.93 30.59 0.18 -1.93 16 3 C -0.10 -1.55 5.10 30.59 0.16 -1.39 16 4 C -0.13 -2.83 4.54 30.59 0.14 -2.69 16 5 C 0.17 3.60 3.01 44.25 0.13 3.73 16 6 H 0.15 2.09 8.14 -2.39 -0.02 2.07 16 7 N -0.72 -12.60 4.65 -461.40 -2.15 -14.75 16 8 C 0.70 16.60 7.60 179.05 1.36 17.96 16 9 N -0.85 -11.87 8.88 -184.74 -1.64 -13.51 16 10 O -0.62 -21.65 13.03 18.41 0.24 -21.41 16 11 C 0.50 16.35 6.78 87.66 0.59 16.94 16 12 O -0.51 -20.48 10.83 19.35 0.21 -20.27 16 13 N -0.64 -23.10 5.41 -308.56 -1.67 -24.78 16 14 C 0.31 13.73 7.66 131.32 1.01 14.74 16 15 C -0.31 -13.85 9.58 22.14 0.21 -13.64 16 16 C 0.06 2.45 7.21 43.07 0.31 2.76 16 17 C -0.06 -1.84 10.44 71.24 0.74 -1.09 16 18 N -0.33 -16.47 12.56 -47.45 -0.60 -17.07 16 19 N -0.37 -18.21 3.60 -348.71 -1.26 -19.47 16 20 C 0.27 14.25 6.01 85.63 0.51 14.76 16 21 C -0.56 -30.39 9.39 25.60 0.24 -30.15 16 22 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 23 C 0.03 1.55 5.46 84.65 0.46 2.01 16 24 N -0.91 -49.61 13.29 21.45 0.28 -49.33 16 25 Si 0.97 41.40 29.54 68.60 2.03 43.43 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 28 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 29 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.97 7.75 -2.39 -0.02 0.95 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.91 6.03 -2.38 -0.01 1.89 16 38 H 0.42 3.80 8.84 -92.71 -0.82 2.98 16 39 H 0.41 2.48 8.84 -92.71 -0.82 1.66 16 40 H 0.42 5.51 8.93 -92.71 -0.83 4.68 16 41 H 0.42 13.66 7.96 -92.70 -0.74 12.92 16 42 H 0.16 7.06 5.83 -2.91 -0.02 7.05 16 43 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.02 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.05 2.45 7.50 -2.39 -0.02 2.43 16 48 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -80.89 397.26 0.04 -80.85 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -2.18 Total: 35.54 kcal Atomic # 6 Polarization: 14.00 SS G_CDS: 6.77 Total: 20.77 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -7.03 Total: -138.90 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: 0.45 Total: -41.69 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -80.89 0.04 -80.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520112269.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.902 kcal (2) G-P(sol) polarization free energy of solvation -80.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds