Wall clock time and date at job start Tue Mar 31 2020 19:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 C 1.53005 * 109.47313 * 240.00012 * 2 1 3 5 5 C 1.50703 * 109.47123 * 119.99815 * 2 1 3 6 6 N 1.30712 * 125.52810 * 240.28154 * 5 2 1 7 7 N 1.40441 * 106.79529 * 180.13434 * 6 5 2 8 8 H 0.97001 * 126.82731 * 179.89828 * 7 6 5 9 9 C 1.34430 * 106.34988 * 359.62909 * 7 6 5 10 10 C 1.50707 * 125.95948 * 180.26249 * 9 7 6 11 11 N 1.46495 * 109.47200 * 94.97646 * 10 9 7 12 12 C 1.34771 * 119.99962 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00115 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99946 * 180.02562 * 12 11 10 15 15 C 1.47426 * 125.64898 * 359.68842 * 14 12 11 16 16 C 1.55124 * 104.71985 * 155.81985 * 15 14 12 17 17 C 1.55160 * 101.49032 * 37.29820 * 16 15 14 18 18 O 1.42892 * 110.71826 * 82.69128 * 17 16 15 19 19 C 1.50696 * 110.87262 * 205.89761 * 17 16 15 20 20 H 1.07995 * 120.00136 * 355.06517 * 19 17 16 21 21 C 1.37877 * 119.99896 * 175.05912 * 19 17 16 22 22 N 1.31515 * 119.99877 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99991 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46937 * 120.00404 * 23 21 19 26 26 H 1.48504 * 109.47226 * 240.00017 * 23 21 19 27 27 C 1.47024 * 125.64676 * 180.02562 * 14 12 11 28 28 N 1.30826 * 108.07840 * 0.22703 * 9 7 6 29 29 H 1.08997 * 109.47296 * 299.99721 * 1 2 3 30 30 H 1.08998 * 109.47201 * 60.00040 * 1 2 3 31 31 H 1.09006 * 109.46677 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47114 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46685 * 300.00093 * 3 2 1 34 34 H 1.08999 * 109.47245 * 59.99809 * 3 2 1 35 35 H 1.09006 * 109.46783 * 299.99919 * 4 2 1 36 36 H 1.08998 * 109.47030 * 59.99842 * 4 2 1 37 37 H 1.08993 * 109.47227 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.46770 * 214.97593 * 10 9 7 39 39 H 1.09006 * 109.46971 * 334.97399 * 10 9 7 40 40 H 0.97004 * 119.99920 * 359.97438 * 11 10 9 41 41 H 1.09000 * 110.36422 * 274.74605 * 15 14 12 42 42 H 1.09000 * 110.36411 * 37.07113 * 15 14 12 43 43 H 1.08999 * 111.19235 * 279.19064 * 16 15 14 44 44 H 1.09004 * 110.90958 * 155.27878 * 16 15 14 45 45 H 0.96706 * 113.99497 * 185.02505 * 18 17 16 46 46 H 0.97008 * 119.99657 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.88552 * 300.43704 * 27 14 12 48 48 H 1.09004 * 109.88633 * 61.44734 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.7827 -0.1804 2.1604 7 7 3.0178 -1.1848 3.1135 8 1 3.5427 -1.1046 3.9253 9 6 2.3660 -2.2777 2.6802 10 6 2.3187 -3.6138 3.3758 11 7 1.1106 -3.6923 4.2007 12 6 0.8567 -4.8036 4.9196 13 8 1.6304 -5.7409 4.8840 14 7 -0.2551 -4.8761 5.6782 15 6 -1.2704 -3.8164 5.8182 16 6 -2.5649 -4.5631 6.2339 17 6 -1.9997 -5.6635 7.1704 18 8 -1.7942 -5.1496 8.4878 19 6 -2.9135 -6.8613 7.2041 20 1 -3.8596 -6.8335 6.6840 21 6 -2.5417 -7.9928 7.8986 22 7 -1.3897 -8.0266 8.5322 23 14 -3.6747 -9.4774 7.9409 24 1 -4.9011 -9.1867 7.1555 25 1 -2.9772 -10.6493 7.3532 26 1 -4.0463 -9.7766 9.3472 27 6 -0.6526 -6.0225 6.5085 28 7 1.7793 -1.9790 1.5497 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.3032 -4.4103 2.6320 39 1 3.1990 -3.7251 4.0091 40 1 0.4939 -2.9442 4.2301 41 1 -0.9741 -3.1069 6.5908 42 1 -1.4172 -3.3038 4.8674 43 1 -3.0610 -5.0032 5.3689 44 1 -3.2404 -3.8996 6.7739 45 1 -1.3707 -5.7746 9.0921 46 1 -1.1282 -8.8226 9.0212 47 1 -0.7707 -6.9087 5.8850 48 1 0.1020 -6.2056 7.2735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592030149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:26 Heat of formation + Delta-G solvation = 0.317506 kcal Electronic energy + Delta-G solvation = -29440.856686 eV Core-core repulsion = 25339.397992 eV Total energy + Delta-G solvation = -4101.458693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55587 -39.74976 -37.60115 -37.19926 -34.77334 -34.31050 -32.52366 -32.23993 -31.44410 -30.00799 -28.05017 -27.62352 -27.53739 -26.77107 -24.76799 -23.51626 -22.67542 -21.31753 -19.84307 -19.60564 -19.26932 -18.23577 -17.48885 -17.08229 -16.33585 -15.66297 -15.50559 -15.41774 -14.98532 -14.79327 -14.34345 -14.23393 -14.03502 -13.93210 -13.43199 -13.07213 -12.88682 -12.86221 -12.57278 -12.50680 -12.18344 -12.14455 -11.93428 -11.71300 -11.68423 -11.45494 -11.37773 -11.24986 -11.07229 -10.85128 -10.69945 -10.47530 -10.33228 -10.26694 -10.19559 -10.00177 -9.66531 -9.34294 -9.08995 -8.69675 -8.34190 -7.84860 -6.29558 -4.37849 1.16257 2.24988 2.47142 3.12472 3.20878 3.29305 3.32675 3.52765 3.60554 4.14378 4.25482 4.33057 4.36666 4.64656 4.74248 4.84141 4.98344 5.21301 5.32401 5.35365 5.36756 5.42731 5.50693 5.53100 5.60105 5.61772 5.65711 5.74004 5.79261 5.95896 5.96234 6.01314 6.03917 6.07834 6.14751 6.42817 6.47408 6.66951 6.70036 6.85365 6.91016 7.19016 7.28299 7.52289 7.72245 7.79062 8.01719 8.39516 8.65961 8.97290 9.27632 9.36695 10.78321 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002231 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.559584 B =12546.502927 C =12822.435930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 C -0.137 4.137 4 C -0.136 4.136 5 C 0.237 3.763 6 N -0.306 5.306 7 N -0.473 5.473 8 H 0.443 0.557 9 C 0.273 3.727 10 C 0.222 3.778 11 N -0.748 5.748 12 C 0.720 3.280 13 O -0.593 6.593 14 N -0.627 5.627 15 C 0.102 3.898 16 C -0.115 4.115 17 C 0.248 3.752 18 O -0.585 6.585 19 C -0.536 4.536 20 H 0.067 0.933 21 C 0.070 3.930 22 N -0.893 5.893 23 Si 0.903 3.097 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.123 3.877 28 N -0.516 5.516 29 H 0.055 0.945 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.397 0.603 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.382 0.618 46 H 0.270 0.730 47 H 0.066 0.934 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 16.392 -14.102 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.046 4.046 6 N -0.135 5.135 7 N -0.192 5.192 8 H 0.289 0.711 9 C -0.006 4.006 10 C 0.095 3.905 11 N -0.408 5.408 12 C 0.422 3.578 13 O -0.471 6.471 14 N -0.363 5.363 15 C -0.021 4.021 16 C -0.153 4.153 17 C 0.207 3.793 18 O -0.394 6.394 19 C -0.575 4.575 20 H 0.085 0.915 21 C -0.133 4.133 22 N -0.532 5.532 23 Si 0.731 3.269 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.001 3.999 28 N -0.245 5.245 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.231 0.769 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.233 0.767 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.349 16.597 -14.547 23.261 hybrid contribution -0.046 -1.072 1.059 1.508 sum 7.303 15.525 -13.488 21.824 Atomic orbital electron populations 1.21843 0.92352 1.03240 1.02111 1.18977 0.96259 0.94192 0.88229 1.21814 1.01612 0.93776 1.02315 1.21836 1.01044 1.01207 0.95382 1.24212 0.94746 0.89250 0.96375 1.78014 1.22599 1.11319 1.01533 1.48080 1.41227 1.08148 1.21711 0.71126 1.24323 0.92389 0.91771 0.92157 1.19379 0.89166 0.88350 0.93617 1.44965 1.26074 1.19085 1.50664 1.15366 0.81522 0.82226 0.78711 1.90912 1.48777 1.37673 1.69743 1.47964 1.21130 1.19820 1.47417 1.22305 0.89682 0.90847 0.99300 1.22761 0.95014 0.98053 0.99514 1.19520 0.89281 0.90063 0.80419 1.86106 1.84104 1.45896 1.23302 1.21518 1.04806 0.97923 1.33205 0.91464 1.25076 0.95132 0.98861 0.94243 1.69706 1.20597 1.30034 1.32887 0.86349 0.80666 0.81963 0.77932 1.19587 1.20754 1.20769 1.22917 0.98480 0.85849 0.92685 1.70350 1.25655 1.15112 1.13333 0.92581 0.91514 0.91246 0.92120 0.91677 0.92055 0.91283 0.91518 0.92686 0.87775 0.89282 0.76904 0.91978 0.92595 0.90350 0.90584 0.76737 0.92048 0.91567 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.46 37.16 0.31 -0.80 16 2 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 3 C -0.14 -1.03 7.93 37.16 0.29 -0.73 16 4 C -0.14 -1.06 8.46 37.16 0.31 -0.75 16 5 C 0.24 2.70 6.36 -156.86 -1.00 1.70 16 6 N -0.31 -3.50 12.06 32.42 0.39 -3.11 16 7 N -0.47 -4.59 7.45 32.62 0.24 -4.35 16 8 H 0.44 3.00 8.96 -182.34 -1.63 1.36 16 9 C 0.27 3.01 7.61 -155.70 -1.18 1.82 16 10 C 0.22 2.57 6.30 -5.19 -0.03 2.54 16 11 N -0.75 -10.46 5.51 -66.41 -0.37 -10.82 16 12 C 0.72 13.73 8.49 -86.92 -0.74 12.99 16 13 O -0.59 -13.43 16.67 5.29 0.09 -13.34 16 14 N -0.63 -12.49 3.32 -176.09 -0.59 -13.08 16 15 C 0.10 1.73 6.58 -2.41 -0.02 1.71 16 16 C -0.12 -2.23 6.24 -24.46 -0.15 -2.39 16 17 C 0.25 5.84 0.85 -89.94 -0.08 5.77 16 18 O -0.59 -14.34 13.07 -35.23 -0.46 -14.80 16 19 C -0.54 -13.79 8.13 -34.44 -0.28 -14.07 16 20 H 0.07 1.71 7.78 -52.49 -0.41 1.30 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 22 N -0.89 -23.49 10.96 55.43 0.61 -22.88 16 23 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.12 2.91 5.23 -3.06 -0.02 2.89 16 28 N -0.52 -6.38 11.19 -8.16 -0.09 -6.47 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.40 5.01 6.94 -40.82 -0.28 4.72 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.06 0.78 7.29 -51.93 -0.38 0.40 16 43 H 0.08 1.47 8.04 -51.93 -0.42 1.05 16 44 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.38 9.61 7.45 45.56 0.34 9.95 16 46 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 47 H 0.07 1.73 7.81 -51.93 -0.41 1.32 16 48 H 0.06 1.67 7.92 -51.93 -0.41 1.26 16 LS Contribution 394.34 15.07 5.94 5.94 Total: -1.00 -31.11 394.34 -10.30 -41.41 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -8.23 Total: 13.77 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -2.82 Total: 12.47 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.20 Total: -60.71 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.37 Total: -28.15 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.11 -10.30 -41.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.730 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds