Wall clock time and date at job start Tue Mar 31 2020 19:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47244 * 2 1 4 4 C 1.53005 * 109.47313 * 240.00012 * 2 1 3 5 5 C 1.50703 * 109.47123 * 119.99815 * 2 1 3 6 6 N 1.30712 * 125.52810 * 240.28154 * 5 2 1 7 7 N 1.40441 * 106.79529 * 180.13434 * 6 5 2 8 8 H 0.97001 * 126.82731 * 179.89828 * 7 6 5 9 9 C 1.34430 * 106.34988 * 359.62909 * 7 6 5 10 10 C 1.50707 * 125.95948 * 180.26249 * 9 7 6 11 11 N 1.46495 * 109.47200 * 94.97646 * 10 9 7 12 12 C 1.34771 * 119.99962 * 180.02562 * 11 10 9 13 13 O 1.21589 * 120.00115 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99946 * 180.02562 * 12 11 10 15 15 C 1.47426 * 125.64898 * 359.68842 * 14 12 11 16 16 C 1.55124 * 104.71985 * 155.81985 * 15 14 12 17 17 C 1.55160 * 101.49032 * 37.29820 * 16 15 14 18 18 O 1.42892 * 110.71826 * 82.69128 * 17 16 15 19 19 C 1.50696 * 110.87262 * 205.89761 * 17 16 15 20 20 H 1.07995 * 120.00136 * 355.06517 * 19 17 16 21 21 C 1.37877 * 119.99896 * 175.05912 * 19 17 16 22 22 N 1.31515 * 119.99877 * 0.02562 * 21 19 17 23 23 Si 1.86800 * 119.99991 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46937 * 120.00404 * 23 21 19 26 26 H 1.48504 * 109.47226 * 240.00017 * 23 21 19 27 27 C 1.47024 * 125.64676 * 180.02562 * 14 12 11 28 28 N 1.30826 * 108.07840 * 0.22703 * 9 7 6 29 29 H 1.08997 * 109.47296 * 299.99721 * 1 2 3 30 30 H 1.08998 * 109.47201 * 60.00040 * 1 2 3 31 31 H 1.09006 * 109.46677 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47114 * 179.97438 * 3 2 1 33 33 H 1.09006 * 109.46685 * 300.00093 * 3 2 1 34 34 H 1.08999 * 109.47245 * 59.99809 * 3 2 1 35 35 H 1.09006 * 109.46783 * 299.99919 * 4 2 1 36 36 H 1.08998 * 109.47030 * 59.99842 * 4 2 1 37 37 H 1.08993 * 109.47227 * 180.02562 * 4 2 1 38 38 H 1.08996 * 109.46770 * 214.97593 * 10 9 7 39 39 H 1.09006 * 109.46971 * 334.97399 * 10 9 7 40 40 H 0.97004 * 119.99920 * 359.97438 * 11 10 9 41 41 H 1.09000 * 110.36422 * 274.74605 * 15 14 12 42 42 H 1.09000 * 110.36411 * 37.07113 * 15 14 12 43 43 H 1.08999 * 111.19235 * 279.19064 * 16 15 14 44 44 H 1.09004 * 110.90958 * 155.27878 * 16 15 14 45 45 H 0.96706 * 113.99497 * 185.02505 * 18 17 16 46 46 H 0.97008 * 119.99657 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.88552 * 300.43704 * 27 14 12 48 48 H 1.09004 * 109.88633 * 61.44734 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 7 2.7827 -0.1804 2.1604 7 7 3.0178 -1.1848 3.1135 8 1 3.5427 -1.1046 3.9253 9 6 2.3660 -2.2777 2.6802 10 6 2.3187 -3.6138 3.3758 11 7 1.1106 -3.6923 4.2007 12 6 0.8567 -4.8036 4.9196 13 8 1.6304 -5.7409 4.8840 14 7 -0.2551 -4.8761 5.6782 15 6 -1.2704 -3.8164 5.8182 16 6 -2.5649 -4.5631 6.2339 17 6 -1.9997 -5.6635 7.1704 18 8 -1.7942 -5.1496 8.4878 19 6 -2.9135 -6.8613 7.2041 20 1 -3.8596 -6.8335 6.6840 21 6 -2.5417 -7.9928 7.8986 22 7 -1.3897 -8.0266 8.5322 23 14 -3.6747 -9.4774 7.9409 24 1 -4.9011 -9.1867 7.1555 25 1 -2.9772 -10.6493 7.3532 26 1 -4.0463 -9.7766 9.3472 27 6 -0.6526 -6.0225 6.5085 28 7 1.7793 -1.9790 1.5497 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.3032 -4.4103 2.6320 39 1 3.1990 -3.7251 4.0091 40 1 0.4939 -2.9442 4.2301 41 1 -0.9741 -3.1069 6.5908 42 1 -1.4172 -3.3038 4.8674 43 1 -3.0610 -5.0032 5.3689 44 1 -3.2404 -3.8996 6.7739 45 1 -1.3707 -5.7746 9.0921 46 1 -1.1282 -8.8226 9.0212 47 1 -0.7707 -6.9087 5.8850 48 1 0.1020 -6.2056 7.2735 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592030149.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:25 Heat of formation + Delta-G solvation = -22.490108 kcal Electronic energy + Delta-G solvation = -29441.845698 eV Core-core repulsion = 25339.397992 eV Total energy + Delta-G solvation = -4102.447706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.40747 -41.28912 -39.21857 -37.94323 -36.08844 -36.02934 -34.21796 -33.37371 -32.53497 -31.51738 -29.63516 -28.57267 -28.14265 -27.80887 -26.50157 -24.32061 -24.19446 -22.22944 -21.46616 -21.15695 -20.08244 -19.41165 -19.01066 -18.58140 -17.61996 -17.11753 -16.85202 -16.48540 -16.30194 -16.15883 -15.78008 -15.31412 -15.00987 -14.81682 -14.77212 -14.63304 -14.44131 -14.30185 -13.70720 -13.50347 -13.32380 -13.14589 -13.10811 -12.94277 -12.86011 -12.56071 -12.54123 -12.34904 -12.33952 -12.24795 -12.08703 -12.01573 -11.90132 -11.45397 -11.17256 -11.15101 -11.11881 -10.71375 -10.64764 -10.40569 -10.27818 -9.45863 -8.25490 -6.40610 0.27117 1.35224 1.41524 1.44796 1.54933 1.57191 1.91842 2.07367 2.38946 2.69235 3.01539 3.01738 3.37450 3.54753 3.79141 4.00460 4.02224 4.04995 4.16371 4.20551 4.35306 4.39516 4.46890 4.56946 4.72519 4.78693 4.79846 4.87849 4.89932 5.00193 5.01990 5.06071 5.12777 5.16259 5.17468 5.19267 5.22247 5.36608 5.39963 5.41925 5.45280 5.49461 5.75689 5.95753 5.99666 6.11214 6.66031 6.94527 6.95054 7.28826 7.36427 7.45898 8.80782 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.022032 B = 0.002231 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.559584 B =12546.502927 C =12822.435930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.021 3.979 3 C -0.131 4.131 4 C -0.132 4.132 5 C 0.229 3.771 6 N -0.318 5.318 7 N -0.461 5.461 8 H 0.455 0.545 9 C 0.275 3.725 10 C 0.226 3.774 11 N -0.726 5.726 12 C 0.719 3.281 13 O -0.633 6.633 14 N -0.633 5.633 15 C 0.108 3.892 16 C -0.111 4.111 17 C 0.233 3.767 18 O -0.587 6.587 19 C -0.555 4.555 20 H 0.066 0.934 21 C 0.026 3.974 22 N -0.914 5.914 23 Si 0.962 3.038 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.278 1.278 27 C 0.142 3.858 28 N -0.537 5.537 29 H 0.049 0.951 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.407 0.593 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.375 0.625 46 H 0.270 0.730 47 H 0.032 0.968 48 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.282 18.287 -15.482 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.018 3.982 3 C -0.189 4.189 4 C -0.190 4.190 5 C -0.054 4.054 6 N -0.147 5.147 7 N -0.181 5.181 8 H 0.304 0.696 9 C -0.005 4.005 10 C 0.099 3.901 11 N -0.385 5.385 12 C 0.421 3.579 13 O -0.515 6.515 14 N -0.369 5.369 15 C -0.014 4.014 16 C -0.149 4.149 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.553 5.553 23 Si 0.787 3.213 24 H -0.189 1.189 25 H -0.210 1.210 26 H -0.204 1.204 27 C 0.018 3.982 28 N -0.266 5.266 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.243 0.757 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.225 0.775 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 6.793 18.565 -15.941 25.395 hybrid contribution 0.173 -1.629 1.462 2.195 sum 6.966 16.936 -14.480 23.346 Atomic orbital electron populations 1.21812 0.91814 1.02534 1.02918 1.19187 0.96683 0.94756 0.87563 1.21774 1.01147 0.92968 1.03022 1.21806 1.00687 1.00604 0.95904 1.24740 0.94525 0.89028 0.97072 1.77993 1.22902 1.11868 1.01930 1.48028 1.40786 1.07410 1.21869 0.69605 1.24033 0.92759 0.91624 0.92065 1.19431 0.88598 0.88625 0.93440 1.44710 1.26811 1.17614 1.49393 1.15471 0.80827 0.82826 0.78771 1.90884 1.50040 1.39535 1.71033 1.47871 1.22230 1.19532 1.47275 1.22425 0.87410 0.89840 1.01716 1.22756 0.96348 0.97093 0.98687 1.19713 0.89062 0.91388 0.80563 1.86096 1.83995 1.45671 1.23719 1.21842 1.05166 0.99071 1.33269 0.91558 1.25793 0.96342 1.01279 0.94091 1.69806 1.21707 1.30526 1.33299 0.85448 0.79093 0.78803 0.77940 1.18948 1.21006 1.20375 1.22372 0.97906 0.86230 0.91674 1.70339 1.26385 1.15874 1.13976 0.93201 0.89271 0.92650 0.92764 0.89464 0.92829 0.92643 0.89244 0.93184 0.88348 0.87595 0.75655 0.90939 0.88638 0.89836 0.89222 0.77542 0.92107 0.94970 0.94963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.46 71.98 0.61 -1.30 16 2 C 0.02 0.33 0.99 -52.93 -0.05 0.28 16 3 C -0.13 -1.70 7.93 71.98 0.57 -1.13 16 4 C -0.13 -1.84 8.46 71.98 0.61 -1.23 16 5 C 0.23 4.90 6.36 138.63 0.88 5.78 16 6 N -0.32 -6.79 12.06 -51.33 -0.62 -7.41 16 7 N -0.46 -8.13 7.45 -50.70 -0.38 -8.51 16 8 H 0.46 5.27 8.96 -213.10 -1.91 3.36 16 9 C 0.27 5.61 7.61 138.23 1.05 6.67 16 10 C 0.23 4.89 6.30 85.64 0.54 5.43 16 11 N -0.73 -19.07 5.51 -482.29 -2.66 -21.73 16 12 C 0.72 27.03 8.49 179.05 1.52 28.55 16 13 O -0.63 -29.05 16.67 -4.00 -0.07 -29.12 16 14 N -0.63 -24.90 3.32 -829.29 -2.76 -27.66 16 15 C 0.11 3.41 6.58 86.93 0.57 3.98 16 16 C -0.11 -4.12 6.24 32.06 0.20 -3.92 16 17 C 0.23 11.05 0.85 -10.35 -0.01 11.05 16 18 O -0.59 -28.99 13.07 -148.98 -1.95 -30.94 16 19 C -0.56 -28.79 8.13 25.60 0.21 -28.58 16 20 H 0.07 3.36 7.78 -2.91 -0.02 3.34 16 21 C 0.03 1.35 5.28 84.65 0.45 1.80 16 22 N -0.91 -49.28 10.96 21.45 0.24 -49.04 16 23 Si 0.96 41.88 29.54 68.60 2.03 43.90 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 27 C 0.14 6.92 5.23 86.73 0.45 7.37 16 28 N -0.54 -12.57 11.19 -179.72 -2.01 -14.59 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.09 0.81 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.41 9.18 6.94 -92.70 -0.64 8.53 16 41 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 2.29 7.29 -2.39 -0.02 2.27 16 43 H 0.08 2.99 8.04 -2.39 -0.02 2.97 16 44 H 0.09 3.08 8.14 -2.38 -0.02 3.06 16 45 H 0.38 19.41 7.45 -74.05 -0.55 18.85 16 46 H 0.27 13.92 8.31 -92.70 -0.77 13.14 16 47 H 0.03 1.75 7.81 -2.39 -0.02 1.73 16 48 H 0.03 1.74 7.92 -2.38 -0.02 1.72 16 Total: -1.00 -68.41 394.34 -2.68 -71.09 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -2.10 Total: 39.24 kcal Atomic # 6 Polarization: 27.15 SS G_CDS: 7.60 Total: 34.75 kcal Atomic # 7 Polarization: -120.74 SS G_CDS: -8.19 Total: -128.93 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -2.01 Total: -60.06 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.90 kcal Total: -68.41 -2.68 -71.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030149.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.602 kcal (2) G-P(sol) polarization free energy of solvation -68.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds