Wall clock time and date at job start Tue Mar 31 2020 19:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.53002 * 109.47076 * 239.99970 * 2 1 3 5 5 C 1.50695 * 109.47183 * 120.00302 * 2 1 3 6 6 N 1.30712 * 125.52725 * 359.97342 * 5 2 1 7 7 N 1.40451 * 106.79409 * 180.02562 * 6 5 2 8 8 H 0.96996 * 126.82309 * 180.02562 * 7 6 5 9 9 C 1.34425 * 106.35294 * 359.97438 * 7 6 5 10 10 C 1.50703 * 125.96097 * 179.97438 * 9 7 6 11 11 N 1.46505 * 109.47064 * 95.02465 * 10 9 7 12 12 C 1.34771 * 119.99622 * 179.97438 * 11 10 9 13 13 O 1.21584 * 120.00541 * 0.02562 * 12 11 10 14 14 N 1.34781 * 119.99489 * 180.02562 * 12 11 10 15 15 C 1.47425 * 125.65022 * 0.02562 * 14 12 11 16 16 C 1.54907 * 104.83213 * 204.09122 * 15 14 12 17 17 C 1.55164 * 101.58446 * 322.99142 * 16 15 14 18 18 O 1.42890 * 110.71986 * 277.13737 * 17 16 15 19 19 C 1.50696 * 110.71840 * 154.03848 * 17 16 15 20 20 H 1.08001 * 120.00613 * 0.02562 * 19 17 16 21 21 C 1.37879 * 120.00005 * 180.02562 * 19 17 16 22 22 N 1.31518 * 119.99965 * 0.02562 * 21 19 17 23 23 Si 1.86799 * 120.00228 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47122 * 59.99913 * 23 21 19 25 25 H 1.48502 * 109.47030 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46933 * 300.00076 * 23 21 19 27 27 C 1.47027 * 125.64746 * 179.72174 * 14 12 11 28 28 N 1.30832 * 108.07809 * 0.24395 * 9 7 6 29 29 H 1.08997 * 109.47317 * 300.00152 * 1 2 3 30 30 H 1.09000 * 109.47238 * 60.00205 * 1 2 3 31 31 H 1.09008 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47500 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47325 * 299.99926 * 3 2 1 34 34 H 1.08997 * 109.47067 * 59.99695 * 3 2 1 35 35 H 1.08997 * 109.47680 * 300.00078 * 4 2 1 36 36 H 1.08999 * 109.47080 * 60.00353 * 4 2 1 37 37 H 1.09004 * 109.47166 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47152 * 335.02548 * 10 9 7 39 39 H 1.09001 * 109.46980 * 215.02648 * 10 9 7 40 40 H 0.96996 * 119.99606 * 0.02562 * 11 10 9 41 41 H 1.08998 * 110.36667 * 322.93436 * 15 14 12 42 42 H 1.09004 * 110.36139 * 85.25503 * 15 14 12 43 43 H 1.08998 * 111.00440 * 81.06555 * 16 15 14 44 44 H 1.09005 * 111.00731 * 204.88087 * 16 15 14 45 45 H 0.96706 * 113.99769 * 179.97438 * 18 17 16 46 46 H 0.96999 * 120.00410 * 180.02562 * 22 21 19 47 47 H 1.09005 * 109.87847 * 298.39299 * 27 14 12 48 48 H 1.09000 * 109.88170 * 59.55293 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2304 6 7 1.2825 -1.2454 2.1579 7 7 2.1512 -1.7970 3.1138 8 1 1.9006 -2.2655 3.9253 9 6 3.3988 -1.5475 2.6801 10 6 4.6743 -1.9485 3.3756 11 7 5.1516 -3.2196 2.8255 12 6 6.2847 -3.7753 3.2984 13 8 6.9106 -3.2220 4.1818 14 7 6.7242 -4.9445 2.7919 15 6 6.0671 -5.7191 1.7235 16 6 6.5514 -7.1754 1.9343 17 6 8.0215 -6.9536 2.3784 18 8 8.8703 -6.7705 1.2435 19 6 8.5033 -8.1057 3.2217 20 1 7.8418 -8.9323 3.4355 21 6 9.7887 -8.1048 3.7206 22 7 10.5941 -7.0981 3.4608 23 14 10.3861 -9.5333 4.7655 24 1 10.3081 -10.7895 3.9775 25 1 11.7929 -9.2922 5.1757 26 1 9.5322 -9.6534 5.9744 27 6 7.9416 -5.6554 3.2092 28 7 3.3127 -0.8909 1.5518 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 4.4856 -2.0625 4.4431 39 1 5.4302 -1.1786 3.2204 40 1 4.6526 -3.6608 2.1204 41 1 4.9834 -5.6614 1.8247 42 1 6.3776 -5.3540 0.7445 43 1 5.9768 -7.6687 2.7181 44 1 6.5050 -7.7412 1.0037 45 1 9.8003 -6.6275 1.4669 46 1 11.4985 -7.0975 3.8115 47 1 8.8172 -5.0354 3.0168 48 1 7.8833 -5.8993 4.2700 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592030150.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:52:30 Heat of formation + Delta-G solvation = 0.262631 kcal Electronic energy + Delta-G solvation = -29416.710688 eV Core-core repulsion = 25315.249615 eV Total energy + Delta-G solvation = -4101.461073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.55559 -39.75476 -37.59749 -37.19859 -34.77859 -34.32947 -32.52430 -32.18009 -31.44975 -30.02029 -28.07597 -27.63485 -27.53373 -26.77542 -24.77818 -23.51614 -22.66947 -21.31989 -19.84129 -19.59390 -19.26748 -18.23828 -17.50423 -17.11457 -16.33639 -15.70338 -15.52649 -15.32584 -15.03374 -14.70831 -14.41958 -14.24428 -14.07189 -13.88796 -13.43210 -13.02884 -12.89470 -12.84710 -12.56994 -12.50078 -12.32546 -12.02816 -11.93199 -11.72946 -11.66145 -11.47686 -11.37573 -11.24715 -11.06731 -10.85139 -10.69216 -10.54135 -10.33189 -10.26589 -10.19195 -10.00614 -9.67391 -9.36832 -9.09505 -8.68506 -8.34617 -7.85591 -6.30996 -4.39806 1.16079 2.24860 2.46809 3.12060 3.21711 3.27086 3.28920 3.51963 3.60868 4.14420 4.23912 4.32659 4.36198 4.64890 4.74251 4.84320 4.96295 5.21027 5.32192 5.35421 5.36978 5.42848 5.50957 5.53282 5.60351 5.62177 5.64362 5.76482 5.79425 5.96006 5.98782 6.01659 6.03904 6.08085 6.14751 6.42403 6.47224 6.66497 6.69833 6.83165 6.90875 7.18201 7.28008 7.50382 7.71761 7.79013 7.98807 8.38898 8.63008 8.96546 9.29153 9.42188 10.76775 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.024758 B = 0.002193 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.660803 B =12765.110849 C =13089.871387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.026 3.974 3 C -0.137 4.137 4 C -0.137 4.137 5 C 0.237 3.763 6 N -0.306 5.306 7 N -0.473 5.473 8 H 0.443 0.557 9 C 0.273 3.727 10 C 0.222 3.778 11 N -0.748 5.748 12 C 0.720 3.280 13 O -0.593 6.593 14 N -0.626 5.626 15 C 0.103 3.897 16 C -0.116 4.116 17 C 0.249 3.751 18 O -0.586 6.586 19 C -0.538 4.538 20 H 0.066 0.934 21 C 0.071 3.929 22 N -0.895 5.895 23 Si 0.905 3.095 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C 0.120 3.880 28 N -0.516 5.516 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.397 0.603 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.386 0.614 46 H 0.272 0.728 47 H 0.063 0.937 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.152 12.325 -5.439 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.023 3.977 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.046 4.046 6 N -0.135 5.135 7 N -0.192 5.192 8 H 0.289 0.711 9 C -0.006 4.006 10 C 0.095 3.905 11 N -0.408 5.408 12 C 0.422 3.578 13 O -0.472 6.472 14 N -0.362 5.362 15 C -0.020 4.020 16 C -0.154 4.154 17 C 0.209 3.791 18 O -0.397 6.397 19 C -0.576 4.576 20 H 0.084 0.916 21 C -0.133 4.133 22 N -0.534 5.534 23 Si 0.732 3.268 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.200 1.200 27 C -0.002 4.002 28 N -0.244 5.244 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.231 0.769 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.239 0.761 46 H 0.082 0.918 47 H 0.082 0.918 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.549 12.939 -5.257 23.219 hybrid contribution 0.587 -1.221 1.336 1.902 sum -17.962 11.719 -3.921 21.802 Atomic orbital electron populations 1.21813 0.92746 1.02708 1.02243 1.18974 0.95783 0.94619 0.88287 1.21835 1.02359 0.93266 1.02012 1.21844 1.02407 0.99997 0.95303 1.24214 0.86890 0.97039 0.96416 1.78016 1.15795 1.18372 1.01288 1.48078 1.04475 1.44923 1.21715 0.71142 1.24320 0.88610 0.95461 0.92252 1.19381 0.88033 0.87324 0.95774 1.44961 1.27658 1.24089 1.44066 1.15363 0.80248 0.80362 0.81836 1.90909 1.58567 1.63713 1.33961 1.47931 1.28295 1.20676 1.39334 1.22258 0.95342 0.93416 0.91019 1.22736 0.97502 0.93482 1.01717 1.19474 0.86250 0.90043 0.83361 1.86073 1.24033 1.94999 1.34545 1.21469 0.98358 1.05542 1.32263 0.91551 1.25079 0.96559 0.96191 0.95432 1.69565 1.07882 1.30443 1.45510 0.86440 0.77804 0.82128 0.80413 1.19990 1.21039 1.20040 1.22959 0.83404 0.93833 1.00020 1.70358 1.20774 1.20197 1.13096 0.92120 0.91679 0.92057 0.91272 0.91521 0.92690 0.92579 0.91509 0.91238 0.89280 0.87767 0.76891 0.92817 0.91776 0.90581 0.90498 0.76137 0.91788 0.91824 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 7.93 37.15 0.29 -0.74 16 2 C 0.03 0.23 0.99 -155.67 -0.15 0.08 16 3 C -0.14 -1.07 8.46 37.15 0.31 -0.76 16 4 C -0.14 -1.12 8.46 37.16 0.31 -0.81 16 5 C 0.24 2.71 6.36 -156.85 -1.00 1.71 16 6 N -0.31 -3.50 12.06 32.42 0.39 -3.10 16 7 N -0.47 -4.57 7.45 32.62 0.24 -4.33 16 8 H 0.44 2.96 8.96 -182.33 -1.63 1.32 16 9 C 0.27 3.01 7.60 -155.70 -1.18 1.82 16 10 C 0.22 2.56 6.30 -5.19 -0.03 2.53 16 11 N -0.75 -10.45 5.51 -66.41 -0.37 -10.81 16 12 C 0.72 13.71 8.49 -86.92 -0.74 12.98 16 13 O -0.59 -13.40 16.67 5.29 0.09 -13.31 16 14 N -0.63 -12.48 3.33 -176.23 -0.59 -13.06 16 15 C 0.10 1.75 6.56 -2.53 -0.02 1.73 16 16 C -0.12 -2.25 6.23 -24.58 -0.15 -2.40 16 17 C 0.25 5.91 0.86 -89.93 -0.08 5.83 16 18 O -0.59 -14.61 13.07 -35.23 -0.46 -15.07 16 19 C -0.54 -13.78 8.12 -34.44 -0.28 -14.06 16 20 H 0.07 1.66 7.76 -52.49 -0.41 1.26 16 21 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 22 N -0.89 -23.49 10.97 55.43 0.61 -22.88 16 23 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.12 2.84 5.54 -3.06 -0.02 2.83 16 28 N -0.52 -6.41 11.19 -8.16 -0.09 -6.50 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.40 5.01 6.94 -40.82 -0.28 4.72 16 41 H 0.05 0.73 7.30 -51.93 -0.38 0.35 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.08 1.40 8.03 -51.93 -0.42 0.99 16 44 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.39 9.96 6.98 45.56 0.32 10.28 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.06 1.66 8.07 -51.93 -0.42 1.24 16 48 H 0.06 1.67 7.82 -51.93 -0.41 1.26 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -31.02 394.29 -10.33 -41.35 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -8.26 Total: 14.18 kcal Atomic # 6 Polarization: 15.29 SS G_CDS: -2.82 Total: 12.46 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.20 Total: -60.69 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.37 Total: -28.38 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.02 -10.33 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592030150.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.615 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds