Wall clock time and date at job start Tue Mar 31 2020 20:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00546 * 2 1 4 4 O 1.21283 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00292 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47470 * 59.99201 * 5 3 2 7 7 C 1.53003 * 109.46657 * 299.99249 * 5 3 2 8 8 C 1.53000 * 109.47073 * 176.66845 * 7 5 3 9 9 C 1.53005 * 109.46898 * 174.15988 * 8 7 5 10 10 C 1.53001 * 109.46959 * 294.15702 * 8 7 5 11 11 N 1.46498 * 109.47303 * 179.97438 * 5 3 2 12 12 C 1.34772 * 119.99905 * 274.99521 * 11 5 3 13 13 O 1.21586 * 120.00086 * 0.02562 * 12 11 5 14 14 N 1.34785 * 119.99766 * 179.97438 * 12 11 5 15 15 C 1.40197 * 119.99605 * 180.02562 * 14 12 11 16 16 C 1.40404 * 125.97304 * 359.71954 * 15 14 12 17 17 C 1.35243 * 107.86156 * 179.82859 * 16 15 14 18 18 N 1.34964 * 107.86287 * 0.42518 * 17 16 15 19 19 C 1.46500 * 125.97533 * 179.70869 * 18 17 16 20 20 C 1.50698 * 109.47090 * 125.00335 * 19 18 17 21 21 H 1.07998 * 119.99959 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99826 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99390 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00195 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46929 * 89.99843 * 24 22 20 26 26 H 1.48506 * 109.47176 * 209.99866 * 24 22 20 27 27 H 1.48499 * 109.46981 * 330.00004 * 24 22 20 28 28 N 1.31209 * 125.96744 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.47029 * 300.00603 * 1 2 3 30 30 H 1.09004 * 109.46775 * 59.99888 * 1 2 3 31 31 H 1.08993 * 109.47518 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99429 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47261 * 296.67016 * 7 5 3 34 34 H 1.09004 * 109.47147 * 56.66549 * 7 5 3 35 35 H 1.08990 * 109.47064 * 54.15869 * 8 7 5 36 36 H 1.08998 * 109.47316 * 57.26965 * 9 8 7 37 37 H 1.09001 * 109.46455 * 177.26527 * 9 8 7 38 38 H 1.09002 * 109.47097 * 297.26728 * 9 8 7 39 39 H 1.08996 * 109.47205 * 59.99855 * 10 8 7 40 40 H 1.08999 * 109.47013 * 180.02562 * 10 8 7 41 41 H 1.09001 * 109.46989 * 300.00153 * 10 8 7 42 42 H 0.97001 * 119.99563 * 94.99129 * 11 5 3 43 43 H 0.97001 * 119.99703 * 359.97438 * 14 12 11 44 44 H 1.07999 * 126.06460 * 359.97438 * 16 15 14 45 45 H 1.08003 * 126.06696 * 180.15607 * 17 16 15 46 46 H 1.09006 * 109.46696 * 244.99787 * 19 18 17 47 47 H 1.08999 * 109.47331 * 4.99671 * 19 18 17 48 48 H 0.97005 * 119.99494 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1670 -0.0006 6 1 4.0090 0.6533 -0.8907 7 6 4.1563 0.4456 1.2485 8 6 5.6840 0.3725 1.2067 9 6 6.2024 -0.2170 2.5201 10 6 6.1203 -0.5172 0.0410 11 7 4.1344 2.5482 -0.0011 12 6 4.2628 3.2171 -1.1640 13 8 3.9728 2.6744 -2.2127 14 7 4.7117 4.4880 -1.1644 15 6 4.8447 5.1840 -2.3741 16 6 4.5535 4.6801 -3.6519 17 6 4.8086 5.6574 -4.5512 18 7 5.2536 6.7370 -3.8744 19 6 5.6520 8.0178 -4.4634 20 6 4.8669 9.1321 -3.8207 21 1 4.1438 8.9085 -3.0502 22 6 5.0725 10.4370 -4.2155 23 7 4.3868 11.4093 -3.6548 24 14 6.3246 10.8239 -5.5465 25 1 5.6620 10.7878 -6.8750 26 1 6.8931 12.1759 -5.3134 27 1 7.4142 9.8156 -5.5092 28 7 5.2685 6.4182 -2.5105 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 0.0004 33 1 3.8429 0.9927 2.1376 34 1 3.7449 -0.5634 1.2789 35 1 6.0921 1.3741 1.0719 36 1 5.7563 -1.1988 2.6787 37 1 7.2869 -0.3142 2.4715 38 1 5.9332 0.4421 3.3455 39 1 5.7510 -0.0974 -0.8946 40 1 7.2086 -0.5697 0.0116 41 1 5.7121 -1.5189 0.1759 42 1 4.3653 2.9812 0.8356 43 1 4.9419 4.9212 -0.3276 44 1 4.1882 3.6889 -3.8763 45 1 4.6830 5.5852 -5.6215 46 1 6.7168 8.1796 -4.2950 47 1 5.4517 8.0032 -5.5347 48 1 4.5317 12.3275 -3.9323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614175346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:37 Heat of formation + Delta-G solvation = 16.086645 kcal Electronic energy + Delta-G solvation = -29205.559128 eV Core-core repulsion = 25104.784236 eV Total energy + Delta-G solvation = -4100.774892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.94380 -40.29343 -39.07287 -37.31083 -34.94372 -34.66093 -34.16593 -33.19381 -31.31338 -30.06668 -29.26435 -27.57222 -27.13688 -26.92286 -24.44931 -22.80904 -21.82119 -20.76223 -20.44436 -20.27533 -19.74118 -18.15193 -17.78584 -17.07979 -16.78336 -16.34016 -15.78810 -15.43236 -15.22568 -15.16429 -14.71705 -14.53143 -14.38299 -14.25916 -13.90431 -13.56290 -13.26672 -13.05374 -12.89659 -12.72068 -12.55360 -12.51234 -12.46135 -12.24705 -12.09558 -12.04602 -11.40457 -11.13181 -11.09629 -11.06597 -10.74384 -10.61527 -10.31346 -10.06227 -9.94498 -9.70962 -9.46478 -9.39009 -9.18239 -8.72073 -8.09508 -7.40266 -6.18716 -4.20607 2.27360 2.43795 2.64092 2.93461 3.18199 3.20189 3.25939 3.26516 3.55979 3.88160 4.14298 4.26909 4.30069 4.32815 4.43688 4.66375 4.76482 4.94622 4.95789 5.09037 5.14896 5.21622 5.24234 5.27993 5.38572 5.48146 5.51640 5.53782 5.54992 5.75860 5.76431 5.92087 5.94083 6.10056 6.13172 6.26057 6.39213 6.53775 6.62078 6.77063 6.99478 7.17922 7.33141 7.50559 7.88751 7.94310 8.01036 8.39497 8.62396 8.66759 8.92323 9.36351 10.94111 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.002302 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.517947 B =12158.064241 C =12917.970264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.737 5.737 3 C 0.497 3.503 4 O -0.519 6.519 5 C 0.151 3.849 6 H 0.120 0.880 7 C -0.118 4.118 8 C -0.097 4.097 9 C -0.147 4.147 10 C -0.153 4.153 11 N -0.721 5.721 12 C 0.723 3.277 13 O -0.567 6.567 14 N -0.641 5.641 15 C 0.281 3.719 16 C -0.281 4.281 17 C 0.050 3.950 18 N -0.321 5.321 19 C 0.233 3.767 20 C -0.533 4.533 21 H 0.086 0.914 22 C 0.075 3.925 23 N -0.888 5.888 24 Si 0.873 3.127 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.264 1.264 28 N -0.300 5.300 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.400 0.600 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.401 0.599 43 H 0.408 0.592 44 H 0.162 0.838 45 H 0.168 0.832 46 H 0.041 0.959 47 H 0.048 0.952 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.690 -29.518 10.955 31.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.390 5.390 3 C 0.281 3.719 4 O -0.393 6.393 5 C 0.040 3.960 6 H 0.138 0.862 7 C -0.157 4.157 8 C -0.115 4.115 9 C -0.205 4.205 10 C -0.210 4.210 11 N -0.376 5.376 12 C 0.422 3.578 13 O -0.442 6.442 14 N -0.290 5.290 15 C 0.026 3.974 16 C -0.312 4.312 17 C -0.100 4.100 18 N -0.103 5.103 19 C 0.114 3.886 20 C -0.571 4.571 21 H 0.104 0.896 22 C -0.128 4.128 23 N -0.526 5.526 24 Si 0.699 3.301 25 H -0.197 1.197 26 H -0.206 1.206 27 H -0.189 1.189 28 N -0.131 5.131 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.233 0.767 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.236 0.764 43 H 0.242 0.758 44 H 0.179 0.821 45 H 0.185 0.815 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.399 -27.860 10.530 29.786 hybrid contribution 0.522 -0.193 -0.276 0.621 sum 0.921 -28.053 10.254 29.883 Atomic orbital electron populations 1.21524 0.79587 1.02052 1.02482 1.45783 1.07751 1.08571 1.76940 1.21319 0.90768 0.83890 0.75948 1.90760 1.69926 1.31209 1.47394 1.20751 0.89893 0.83345 1.01963 0.86203 1.21950 0.96687 1.00806 0.96213 1.21122 0.93881 1.00694 0.95834 1.21842 1.01224 1.00846 0.96569 1.21928 1.01634 0.99348 0.98138 1.44566 1.71190 1.13842 1.08050 1.15482 0.77790 0.80424 0.84073 1.90846 1.55591 1.67868 1.29926 1.41290 1.68305 1.11935 1.07478 1.18772 1.01570 0.91230 0.85786 1.21520 1.17260 1.02793 0.89655 1.22534 1.00738 0.87653 0.99037 1.48572 1.47755 1.11764 1.02221 1.20021 0.97013 0.78242 0.93352 1.21132 1.23413 0.89423 1.23150 0.89627 1.24842 0.95770 0.95858 0.96362 1.69885 1.40588 1.00065 1.42045 0.86902 0.82108 0.78660 0.82402 1.19735 1.20581 1.18859 1.77384 1.27377 1.11654 0.96649 0.92303 0.92143 0.90721 0.76667 0.90467 0.89717 0.90415 0.92637 0.92415 0.92590 0.92081 0.92421 0.92572 0.76426 0.75754 0.82068 0.81486 0.94102 0.93385 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.61 10.70 59.85 0.64 1.25 16 2 N -0.74 -5.44 5.59 -67.08 -0.37 -5.81 16 3 C 0.50 5.56 7.19 -10.99 -0.08 5.48 16 4 O -0.52 -8.54 16.32 5.55 0.09 -8.45 16 5 C 0.15 1.32 2.24 -69.08 -0.15 1.16 16 6 H 0.12 1.10 5.88 -51.93 -0.31 0.80 16 7 C -0.12 -0.59 4.15 -26.73 -0.11 -0.70 16 8 C -0.10 -0.50 2.86 -90.62 -0.26 -0.76 16 9 C -0.15 -0.64 9.19 37.16 0.34 -0.30 16 10 C -0.15 -0.85 8.97 37.16 0.33 -0.51 16 11 N -0.72 -7.77 3.90 -59.81 -0.23 -8.01 16 12 C 0.72 11.26 8.36 -86.91 -0.73 10.53 16 13 O -0.57 -10.53 13.13 5.29 0.07 -10.46 16 14 N -0.64 -10.64 5.46 -15.50 -0.08 -10.72 16 15 C 0.28 5.90 8.11 -154.36 -1.25 4.65 16 16 C -0.28 -5.77 9.61 -39.83 -0.38 -6.15 16 17 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 18 N -0.32 -7.54 3.67 -62.56 -0.23 -7.77 16 19 C 0.23 5.67 5.33 -5.19 -0.03 5.64 16 20 C -0.53 -15.42 9.79 -34.44 -0.34 -15.76 16 21 H 0.09 2.82 8.06 -52.49 -0.42 2.39 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.06 16 23 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 24 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 28 N -0.30 -7.13 12.42 31.44 0.39 -6.74 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.40 1.53 8.20 -40.82 -0.33 1.19 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.25 7.47 -51.93 -0.39 -0.14 16 35 H 0.08 0.48 7.51 -51.93 -0.39 0.09 16 36 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.06 0.42 6.52 -51.93 -0.34 0.09 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.40 3.30 8.59 -40.82 -0.35 2.95 16 43 H 0.41 5.59 8.84 -40.82 -0.36 5.23 16 44 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 45 H 0.17 2.68 8.06 -52.48 -0.42 2.25 16 46 H 0.04 0.99 7.20 -51.93 -0.37 0.61 16 47 H 0.05 1.06 7.50 -51.93 -0.39 0.67 16 48 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 397.39 15.07 5.99 5.99 Total: -1.00 -39.19 397.39 -7.95 -47.13 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -7.36 Total: 7.98 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -2.31 Total: 7.41 kcal Atomic # 7 Polarization: -65.67 SS G_CDS: 0.24 Total: -65.42 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -39.19 -7.95 -47.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614175346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.218 kcal (2) G-P(sol) polarization free energy of solvation -39.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds