Wall clock time and date at job start Tue Mar 31 2020 20:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34772 * 120.00546 * 2 1 4 4 O 1.21283 * 119.99823 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00292 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47470 * 59.99201 * 5 3 2 7 7 C 1.53003 * 109.46657 * 299.99249 * 5 3 2 8 8 C 1.53000 * 109.47073 * 176.66845 * 7 5 3 9 9 C 1.53005 * 109.46898 * 174.15988 * 8 7 5 10 10 C 1.53001 * 109.46959 * 294.15702 * 8 7 5 11 11 N 1.46498 * 109.47303 * 179.97438 * 5 3 2 12 12 C 1.34772 * 119.99905 * 274.99521 * 11 5 3 13 13 O 1.21586 * 120.00086 * 0.02562 * 12 11 5 14 14 N 1.34785 * 119.99766 * 179.97438 * 12 11 5 15 15 C 1.40197 * 119.99605 * 180.02562 * 14 12 11 16 16 C 1.40404 * 125.97304 * 359.71954 * 15 14 12 17 17 C 1.35243 * 107.86156 * 179.82859 * 16 15 14 18 18 N 1.34964 * 107.86287 * 0.42518 * 17 16 15 19 19 C 1.46500 * 125.97533 * 179.70869 * 18 17 16 20 20 C 1.50698 * 109.47090 * 125.00335 * 19 18 17 21 21 H 1.07998 * 119.99959 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99826 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99390 * 179.97438 * 22 20 19 24 24 Si 1.86795 * 120.00195 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.46929 * 89.99843 * 24 22 20 26 26 H 1.48506 * 109.47176 * 209.99866 * 24 22 20 27 27 H 1.48499 * 109.46981 * 330.00004 * 24 22 20 28 28 N 1.31209 * 125.96744 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.47029 * 300.00603 * 1 2 3 30 30 H 1.09004 * 109.46775 * 59.99888 * 1 2 3 31 31 H 1.08993 * 109.47518 * 180.02562 * 1 2 3 32 32 H 0.97005 * 119.99429 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.47261 * 296.67016 * 7 5 3 34 34 H 1.09004 * 109.47147 * 56.66549 * 7 5 3 35 35 H 1.08990 * 109.47064 * 54.15869 * 8 7 5 36 36 H 1.08998 * 109.47316 * 57.26965 * 9 8 7 37 37 H 1.09001 * 109.46455 * 177.26527 * 9 8 7 38 38 H 1.09002 * 109.47097 * 297.26728 * 9 8 7 39 39 H 1.08996 * 109.47205 * 59.99855 * 10 8 7 40 40 H 1.08999 * 109.47013 * 180.02562 * 10 8 7 41 41 H 1.09001 * 109.46989 * 300.00153 * 10 8 7 42 42 H 0.97001 * 119.99563 * 94.99129 * 11 5 3 43 43 H 0.97001 * 119.99703 * 359.97438 * 14 12 11 44 44 H 1.07999 * 126.06460 * 359.97438 * 16 15 14 45 45 H 1.08003 * 126.06696 * 180.15607 * 17 16 15 46 46 H 1.09006 * 109.46696 * 244.99787 * 19 18 17 47 47 H 1.08999 * 109.47331 * 4.99671 * 19 18 17 48 48 H 0.97005 * 119.99494 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1670 -0.0006 6 1 4.0090 0.6533 -0.8907 7 6 4.1563 0.4456 1.2485 8 6 5.6840 0.3725 1.2067 9 6 6.2024 -0.2170 2.5201 10 6 6.1203 -0.5172 0.0410 11 7 4.1344 2.5482 -0.0011 12 6 4.2628 3.2171 -1.1640 13 8 3.9728 2.6744 -2.2127 14 7 4.7117 4.4880 -1.1644 15 6 4.8447 5.1840 -2.3741 16 6 4.5535 4.6801 -3.6519 17 6 4.8086 5.6574 -4.5512 18 7 5.2536 6.7370 -3.8744 19 6 5.6520 8.0178 -4.4634 20 6 4.8669 9.1321 -3.8207 21 1 4.1438 8.9085 -3.0502 22 6 5.0725 10.4370 -4.2155 23 7 4.3868 11.4093 -3.6548 24 14 6.3246 10.8239 -5.5465 25 1 5.6620 10.7878 -6.8750 26 1 6.8931 12.1759 -5.3134 27 1 7.4142 9.8156 -5.5092 28 7 5.2685 6.4182 -2.5105 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.9499 -0.8401 0.0004 33 1 3.8429 0.9927 2.1376 34 1 3.7449 -0.5634 1.2789 35 1 6.0921 1.3741 1.0719 36 1 5.7563 -1.1988 2.6787 37 1 7.2869 -0.3142 2.4715 38 1 5.9332 0.4421 3.3455 39 1 5.7510 -0.0974 -0.8946 40 1 7.2086 -0.5697 0.0116 41 1 5.7121 -1.5189 0.1759 42 1 4.3653 2.9812 0.8356 43 1 4.9419 4.9212 -0.3276 44 1 4.1882 3.6889 -3.8763 45 1 4.6830 5.5852 -5.6215 46 1 6.7168 8.1796 -4.2950 47 1 5.4517 8.0032 -5.5347 48 1 4.5317 12.3275 -3.9323 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614175346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:36 Heat of formation + Delta-G solvation = -14.547794 kcal Electronic energy + Delta-G solvation = -29206.887537 eV Core-core repulsion = 25104.784236 eV Total energy + Delta-G solvation = -4102.103301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.30326 -41.51223 -40.24420 -37.96765 -36.22841 -35.71028 -35.26725 -34.95680 -33.08803 -31.13905 -30.75044 -28.88220 -27.95870 -27.64636 -25.27806 -24.49115 -23.21127 -22.01672 -21.49877 -21.32616 -20.76383 -19.38001 -19.09276 -18.63908 -18.18827 -17.58265 -16.84248 -16.59658 -16.53849 -16.16230 -15.81716 -15.64172 -15.47388 -15.36781 -15.04450 -14.79632 -14.55584 -14.37143 -13.98505 -13.87801 -13.81466 -13.50448 -13.22820 -13.05881 -12.99743 -12.92739 -12.53796 -12.51850 -12.32110 -11.94828 -11.83105 -11.64297 -11.55804 -11.50341 -11.46427 -11.27199 -11.15484 -10.86795 -10.17815 -10.14296 -9.74322 -9.04575 -8.37295 -6.47792 1.03302 1.06813 1.36531 1.40194 1.50045 1.57219 1.67471 2.01067 2.26619 2.29479 2.49189 2.95024 3.10117 3.57503 3.76861 3.92529 3.97162 4.11565 4.20564 4.24274 4.44607 4.47775 4.60491 4.60954 4.72031 4.76133 4.81811 4.86056 4.89237 4.93173 4.95104 4.98455 5.07734 5.11696 5.15622 5.23981 5.34492 5.39443 5.42376 5.52078 5.55078 5.76209 5.91408 6.01886 6.42092 6.52326 6.57368 6.68292 7.09973 7.15318 7.24544 7.38846 8.80139 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.002302 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.517947 B =12158.064241 C =12917.970264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.490 3.510 4 O -0.581 6.581 5 C 0.151 3.849 6 H 0.120 0.880 7 C -0.107 4.107 8 C -0.094 4.094 9 C -0.144 4.144 10 C -0.153 4.153 11 N -0.703 5.703 12 C 0.720 3.280 13 O -0.597 6.597 14 N -0.638 5.638 15 C 0.284 3.716 16 C -0.293 4.293 17 C 0.061 3.939 18 N -0.345 5.345 19 C 0.240 3.760 20 C -0.548 4.548 21 H 0.023 0.977 22 C 0.012 3.988 23 N -0.944 5.944 24 Si 0.958 3.042 25 H -0.253 1.253 26 H -0.280 1.280 27 H -0.238 1.238 28 N -0.349 5.349 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.116 0.884 32 H 0.420 0.580 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.419 0.581 44 H 0.166 0.834 45 H 0.212 0.788 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.987 -32.298 10.212 33.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.276 3.724 4 O -0.460 6.460 5 C 0.042 3.958 6 H 0.137 0.863 7 C -0.145 4.145 8 C -0.113 4.113 9 C -0.202 4.202 10 C -0.210 4.210 11 N -0.359 5.359 12 C 0.419 3.581 13 O -0.475 6.475 14 N -0.289 5.289 15 C 0.029 3.971 16 C -0.324 4.324 17 C -0.087 4.087 18 N -0.127 5.127 19 C 0.120 3.880 20 C -0.586 4.586 21 H 0.042 0.958 22 C -0.186 4.186 23 N -0.583 5.583 24 Si 0.779 3.221 25 H -0.177 1.177 26 H -0.206 1.206 27 H -0.161 1.161 28 N -0.180 5.180 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.135 0.865 32 H 0.258 0.742 33 H 0.102 0.898 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.251 0.749 43 H 0.255 0.745 44 H 0.184 0.816 45 H 0.228 0.772 46 H 0.065 0.935 47 H 0.100 0.900 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.698 -30.755 9.854 32.340 hybrid contribution -0.013 0.512 0.091 0.521 sum 1.685 -30.243 9.945 31.880 Atomic orbital electron populations 1.21642 0.79119 1.04303 1.00948 1.45678 1.08164 1.08480 1.74808 1.21742 0.91657 0.83955 0.75076 1.90739 1.71159 1.33445 1.50636 1.21017 0.88559 0.82208 1.04017 0.86284 1.21977 0.96516 1.01846 0.94186 1.21085 0.93812 1.00049 0.96363 1.21809 1.01064 1.01479 0.95821 1.21928 1.01407 1.00322 0.97371 1.44521 1.69784 1.14487 1.07109 1.15690 0.77429 0.79993 0.84970 1.90805 1.56893 1.68395 1.31433 1.41358 1.68397 1.12337 1.06813 1.19130 0.99843 0.90661 0.87508 1.21706 1.17807 1.03210 0.89706 1.23233 0.98387 0.86147 1.00930 1.48494 1.49497 1.12258 1.02471 1.19887 0.96340 0.77222 0.94518 1.21247 1.23144 0.91828 1.22371 0.95833 1.25971 0.98206 0.95101 0.99348 1.70068 1.42966 1.00825 1.44403 0.85576 0.79169 0.78764 0.78611 1.17702 1.20569 1.16094 1.77301 1.29837 1.13232 0.97653 0.93110 0.94506 0.86517 0.74239 0.89797 0.86699 0.91819 0.91352 0.92776 0.92378 0.93794 0.92912 0.90683 0.74890 0.74455 0.81648 0.77174 0.93520 0.89984 0.91882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.06 10.70 127.77 1.37 2.43 16 2 N -0.72 -9.30 5.59 -484.53 -2.71 -12.01 16 3 C 0.49 10.68 7.19 87.66 0.63 11.31 16 4 O -0.58 -19.57 16.32 -3.04 -0.05 -19.62 16 5 C 0.15 2.49 2.24 44.25 0.10 2.59 16 6 H 0.12 2.07 5.88 -2.39 -0.01 2.05 16 7 C -0.11 -0.80 4.15 30.60 0.13 -0.67 16 8 C -0.09 -0.79 2.86 -10.79 -0.03 -0.82 16 9 C -0.14 -0.90 9.19 71.98 0.66 -0.24 16 10 C -0.15 -1.42 8.97 71.98 0.65 -0.77 16 11 N -0.70 -15.06 3.90 -461.41 -1.80 -16.86 16 12 C 0.72 22.75 8.36 179.05 1.50 24.25 16 13 O -0.60 -22.47 13.13 -3.99 -0.05 -22.52 16 14 N -0.64 -21.78 5.46 -321.22 -1.75 -23.53 16 15 C 0.28 12.23 8.11 133.31 1.08 13.31 16 16 C -0.29 -12.03 9.61 22.11 0.21 -11.82 16 17 C 0.06 2.39 11.44 83.52 0.96 3.34 16 18 N -0.35 -16.22 3.67 -351.84 -1.29 -17.51 16 19 C 0.24 11.49 5.33 85.63 0.46 11.94 16 20 C -0.55 -32.66 9.79 25.60 0.25 -32.41 16 21 H 0.02 1.64 8.06 -2.91 -0.02 1.62 16 22 C 0.01 0.71 5.47 84.65 0.46 1.18 16 23 N -0.94 -59.58 13.96 21.45 0.30 -59.28 16 24 Si 0.96 41.59 27.47 68.60 1.88 43.47 16 25 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 26 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.24 -9.28 6.54 99.48 0.65 -8.62 16 28 N -0.35 -17.13 12.42 -54.43 -0.68 -17.81 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.42 1.90 8.20 -92.70 -0.76 1.14 16 33 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.11 0.22 7.47 -2.38 -0.02 0.20 16 35 H 0.06 0.72 7.51 -2.39 -0.02 0.70 16 36 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.04 0.56 6.52 -2.39 -0.02 0.55 16 40 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 42 H 0.41 6.67 8.59 -92.71 -0.80 5.87 16 43 H 0.42 11.92 8.84 -92.71 -0.82 11.10 16 44 H 0.17 6.67 5.91 -2.91 -0.02 6.65 16 45 H 0.21 6.08 8.06 -2.91 -0.02 6.06 16 46 H 0.05 2.17 7.20 -2.38 -0.02 2.15 16 47 H 0.08 3.37 7.50 -2.39 -0.02 3.35 16 48 H 0.27 15.78 8.31 -92.70 -0.77 15.01 16 Total: -1.00 -91.67 397.39 0.85 -90.83 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: -1.42 Total: 31.24 kcal Atomic # 6 Polarization: 15.19 SS G_CDS: 8.42 Total: 23.61 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -7.93 Total: -147.00 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -0.10 Total: -42.14 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.88 Total: 43.47 kcal Total: -91.67 0.85 -90.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614175346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.277 kcal (2) G-P(sol) polarization free energy of solvation -91.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds