Wall clock time and date at job start Tue Mar 31 2020 20:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 C 1.52996 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47058 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99929 * 293.95509 * 5 4 3 7 7 C 1.46897 * 111.00468 * 170.00084 * 5 4 3 8 8 C 1.53000 * 109.47194 * 190.00042 * 7 5 4 9 9 N 1.46505 * 109.47069 * 179.97438 * 8 7 5 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 7 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.46919 * 299.99478 * 1 2 3 29 29 H 1.09000 * 109.46978 * 60.00207 * 1 2 3 30 30 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.00054 * 2 1 3 32 32 H 1.08998 * 109.47214 * 120.00523 * 2 1 3 33 33 H 1.09000 * 109.46709 * 60.00393 * 3 2 1 34 34 H 1.08993 * 109.47005 * 300.00174 * 3 2 1 35 35 H 1.09001 * 109.47640 * 60.00623 * 4 3 2 36 36 H 1.08993 * 109.47407 * 299.99913 * 4 3 2 37 37 H 1.08995 * 109.47184 * 296.04641 * 6 5 4 38 38 H 1.09005 * 109.46942 * 56.04269 * 6 5 4 39 39 H 1.09003 * 109.47322 * 176.04024 * 6 5 4 40 40 H 1.08998 * 109.47111 * 69.99885 * 7 5 4 41 41 H 1.09001 * 109.47113 * 310.00288 * 7 5 4 42 42 H 1.08998 * 109.47220 * 59.99910 * 8 7 5 43 43 H 1.08992 * 109.47177 * 299.99527 * 8 7 5 44 44 H 0.96997 * 119.99535 * 0.02562 * 9 8 7 45 45 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 46 46 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 47 47 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 48 48 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7097 3.5101 -1.2528 7 6 5.5086 2.8734 0.2375 8 6 5.9401 4.3213 0.4791 9 7 7.3850 4.3671 0.7166 10 6 7.9918 5.5468 0.9540 11 8 7.3413 6.5712 0.9714 12 6 9.4644 5.5934 1.1966 13 8 10.1151 4.5687 1.1796 14 7 10.0712 6.7731 1.4345 15 6 11.4548 6.8170 1.6619 16 6 12.3287 5.7141 1.6719 17 7 13.5393 6.1491 1.9132 18 7 13.4863 7.5393 2.0750 19 6 14.5515 8.3627 2.3437 20 1 14.4176 9.4344 2.3501 21 6 15.8038 7.8174 2.6019 22 7 15.9940 6.5240 2.4815 23 14 17.2161 8.9248 3.1200 24 1 17.3111 8.9453 4.6018 25 1 18.4858 8.4074 2.5496 26 1 16.9741 10.3022 2.6204 27 6 12.1894 7.9310 1.9130 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8890 37 1 4.2160 3.0227 -2.0859 38 1 2.6313 3.4611 -1.4043 39 1 4.0219 4.5530 -1.1978 40 1 6.0322 2.4787 -0.6332 41 1 5.7527 2.2707 1.1123 42 1 5.4164 4.7160 1.3498 43 1 5.6961 4.9239 -0.3956 44 1 7.9050 3.5484 0.7023 45 1 9.5512 7.5919 1.4484 46 1 12.0489 4.6844 1.5048 47 1 16.8678 6.1434 2.6620 48 1 11.8155 8.9424 1.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746406935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:16 Heat of formation + Delta-G solvation = 11.170960 kcal Electronic energy + Delta-G solvation = -27578.375065 eV Core-core repulsion = 23477.387013 eV Total energy + Delta-G solvation = -4100.988052 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.50714 -39.54297 -38.62611 -37.86076 -35.74842 -34.73117 -34.03833 -33.15719 -30.42543 -30.29606 -28.73050 -28.03515 -26.68088 -25.31037 -24.06806 -22.76042 -21.55785 -21.19416 -21.03342 -20.26534 -19.47146 -18.16405 -17.45692 -16.75036 -16.41719 -16.02500 -15.69591 -15.52895 -15.30103 -15.23175 -14.92390 -14.56259 -14.38317 -14.02015 -13.76940 -13.59928 -13.49598 -13.18840 -12.99057 -12.98127 -12.73386 -12.33057 -12.13724 -11.75351 -11.68035 -11.62551 -11.58232 -11.41924 -11.32092 -11.24844 -11.16923 -10.91156 -10.85704 -10.55153 -10.29252 -9.30400 -9.23927 -9.14780 -8.88313 -8.81436 -8.13510 -6.78786 -6.61592 -4.28619 1.64754 2.49753 2.92917 3.03589 3.08809 3.32269 3.44859 3.70959 3.78001 4.04062 4.35555 4.36394 4.49235 4.51677 4.61249 4.67294 4.71105 4.83568 4.93351 4.96586 5.01738 5.10600 5.13229 5.18559 5.21794 5.33613 5.41682 5.50560 5.52214 5.60255 5.62503 5.72564 5.82378 5.91364 6.12689 6.19558 6.35527 6.57242 6.58287 6.74732 6.88636 6.90500 7.15498 7.19192 7.75207 7.84694 8.09110 8.17670 8.47728 8.68642 9.30705 9.59010 10.34485 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.046081 B = 0.001457 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.473400 B =19206.370942 C =19630.428285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.117 4.117 4 C 0.055 3.945 5 N -0.539 5.539 6 C 0.015 3.985 7 C 0.043 3.957 8 C 0.121 3.879 9 N -0.705 5.705 10 C 0.517 3.483 11 O -0.527 6.527 12 C 0.484 3.516 13 O -0.524 6.524 14 N -0.583 5.583 15 C -0.070 4.070 16 C -0.026 4.026 17 N -0.262 5.262 18 N -0.138 5.138 19 C -0.323 4.323 20 H 0.118 0.882 21 C 0.047 3.953 22 N -0.767 5.767 23 Si 0.936 3.064 24 H -0.270 1.270 25 H -0.275 1.275 26 H -0.263 1.263 27 C -0.076 4.076 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.072 0.928 44 H 0.413 0.587 45 H 0.409 0.591 46 H 0.178 0.822 47 H 0.276 0.724 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.273 -8.687 -5.280 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.073 4.073 5 N -0.263 5.263 6 C -0.133 4.133 7 C -0.086 4.086 8 C -0.002 4.002 9 N -0.360 5.360 10 C 0.298 3.702 11 O -0.402 6.402 12 C 0.265 3.735 13 O -0.401 6.401 14 N -0.225 5.225 15 C -0.176 4.176 16 C -0.202 4.202 17 N -0.092 5.092 18 N 0.095 4.905 19 C -0.455 4.455 20 H 0.136 0.864 21 C -0.170 4.170 22 N -0.393 5.393 23 Si 0.759 3.241 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.187 1.187 27 C -0.228 4.228 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.094 0.906 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.062 0.938 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.249 0.751 45 H 0.244 0.756 46 H 0.194 0.806 47 H 0.086 0.914 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -23.106 -8.926 -4.729 25.217 hybrid contribution 0.045 0.353 -0.594 0.692 sum -23.061 -8.572 -5.323 25.172 Atomic orbital electron populations 1.21758 0.95685 1.01607 1.01897 1.21495 0.96055 0.96669 1.02026 1.21639 0.94252 0.96729 1.02882 1.22177 0.95828 0.88238 1.01068 1.61860 1.12717 1.16324 1.35366 1.22560 1.01737 0.99614 0.89423 1.22267 0.88143 0.96488 1.01688 1.21352 0.79565 0.96584 1.02729 1.45600 1.09123 1.09921 1.71345 1.20253 0.88746 0.83823 0.77409 1.90737 1.66484 1.33305 1.49719 1.19626 0.87439 0.84617 0.81846 1.90653 1.65115 1.33213 1.51157 1.42140 1.06955 1.08720 1.64710 1.17264 0.81957 0.94882 1.23531 1.24138 0.90059 0.99066 1.06888 1.78254 1.18024 0.88321 1.24648 1.44558 1.03700 1.05062 1.37160 1.19940 0.86172 0.89926 1.49490 0.86409 1.25664 0.99246 0.96420 0.95711 1.70209 1.23706 1.10795 1.34628 0.85791 0.79336 0.79721 0.79206 1.19572 1.20053 1.18705 1.21315 0.85896 0.97412 1.18157 0.92610 0.92806 0.92787 0.92190 0.91889 0.90956 0.91873 0.94696 0.90569 0.95388 0.90883 0.90807 0.93773 0.89720 0.90075 0.91019 0.75092 0.75561 0.80564 0.91360 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.33 16 2 C -0.12 -0.61 5.93 -26.73 -0.16 -0.76 16 3 C -0.12 -0.65 5.15 -26.73 -0.14 -0.79 16 4 C 0.05 0.34 4.96 -3.82 -0.02 0.32 16 5 N -0.54 -3.98 4.76 -242.92 -1.16 -5.13 16 6 C 0.01 0.10 9.13 60.07 0.55 0.65 16 7 C 0.04 0.32 5.07 -3.83 -0.02 0.30 16 8 C 0.12 1.17 5.60 -4.04 -0.02 1.15 16 9 N -0.71 -8.23 5.55 -60.78 -0.34 -8.57 16 10 C 0.52 7.82 7.88 -11.65 -0.09 7.73 16 11 O -0.53 -8.77 16.47 5.49 0.09 -8.68 16 12 C 0.48 8.74 7.85 -11.65 -0.09 8.65 16 13 O -0.52 -10.52 13.62 5.45 0.07 -10.44 16 14 N -0.58 -11.02 5.45 -10.46 -0.06 -11.08 16 15 C -0.07 -1.63 6.90 -83.93 -0.58 -2.21 16 16 C -0.03 -0.67 10.84 -17.02 -0.18 -0.85 16 17 N -0.26 -7.51 10.41 30.81 0.32 -7.19 16 18 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 19 C -0.32 -8.45 10.24 -14.82 -0.15 -8.60 16 20 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 21 C 0.05 1.20 5.50 -17.50 -0.10 1.11 16 22 N -0.77 -21.11 11.83 55.50 0.66 -20.45 16 23 Si 0.94 18.66 29.56 -169.99 -5.02 13.64 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 27 C -0.08 -1.80 11.50 -16.38 -0.19 -1.98 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.35 6.47 -51.93 -0.34 0.01 16 35 H 0.03 0.22 8.12 -51.93 -0.42 -0.21 16 36 H 0.08 0.46 7.93 -51.93 -0.41 0.05 16 37 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.43 6.30 -51.93 -0.33 0.10 16 39 H 0.07 0.51 6.47 -51.93 -0.34 0.18 16 40 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 41 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 44 H 0.41 4.37 7.94 -40.82 -0.32 4.05 16 45 H 0.41 6.69 8.29 -40.82 -0.34 6.35 16 46 H 0.18 4.42 5.92 -52.48 -0.31 4.11 16 47 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -32.35 398.55 -7.62 -39.97 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -7.33 Total: 11.37 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -0.82 Total: 4.37 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: -0.62 Total: -56.22 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: 0.16 Total: -19.13 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.64 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.35 -7.62 -39.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746406935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.141 kcal (2) G-P(sol) polarization free energy of solvation -32.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds