Wall clock time and date at job start Tue Mar 31 2020 20:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47300 * 2 1 4 4 C 1.52996 * 109.46928 * 180.02562 * 3 2 1 5 5 N 1.46903 * 109.47058 * 180.02562 * 4 3 2 6 6 C 1.46905 * 110.99929 * 293.95509 * 5 4 3 7 7 C 1.46897 * 111.00468 * 170.00084 * 5 4 3 8 8 C 1.53000 * 109.47194 * 190.00042 * 7 5 4 9 9 N 1.46505 * 109.47069 * 179.97438 * 8 7 5 10 10 C 1.34772 * 119.99990 * 179.97438 * 9 8 7 11 11 O 1.21359 * 120.00226 * 0.02562 * 10 9 8 12 12 C 1.49308 * 119.99928 * 179.97438 * 10 9 8 13 13 O 1.21403 * 119.99901 * 0.02562 * 12 10 9 14 14 N 1.34778 * 120.00276 * 180.02562 * 12 10 9 15 15 C 1.40286 * 120.00387 * 180.02562 * 14 12 10 16 16 C 1.40721 * 126.09820 * 359.95366 * 15 14 12 17 17 N 1.30877 * 108.37690 * 179.79326 * 16 15 14 18 18 N 1.40061 * 108.43327 * 0.38408 * 17 16 15 19 19 C 1.37293 * 126.05371 * 179.87288 * 18 17 16 20 20 H 1.07999 * 120.00325 * 173.76022 * 19 18 17 21 21 C 1.39009 * 120.00141 * 354.03938 * 19 18 17 22 22 N 1.31274 * 120.00094 * 5.58291 * 21 19 18 23 23 Si 1.86802 * 120.00082 * 185.57849 * 21 19 18 24 24 H 1.48497 * 109.47065 * 94.97773 * 23 21 19 25 25 H 1.48495 * 109.47224 * 214.98268 * 23 21 19 26 26 H 1.48506 * 109.47153 * 334.98084 * 23 21 19 27 27 C 1.35787 * 126.10217 * 180.02562 * 15 14 12 28 28 H 1.09000 * 109.46919 * 299.99478 * 1 2 3 29 29 H 1.09000 * 109.46978 * 60.00207 * 1 2 3 30 30 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.00054 * 2 1 3 32 32 H 1.08998 * 109.47214 * 120.00523 * 2 1 3 33 33 H 1.09000 * 109.46709 * 60.00393 * 3 2 1 34 34 H 1.08993 * 109.47005 * 300.00174 * 3 2 1 35 35 H 1.09001 * 109.47640 * 60.00623 * 4 3 2 36 36 H 1.08993 * 109.47407 * 299.99913 * 4 3 2 37 37 H 1.08995 * 109.47184 * 296.04641 * 6 5 4 38 38 H 1.09005 * 109.46942 * 56.04269 * 6 5 4 39 39 H 1.09003 * 109.47322 * 176.04024 * 6 5 4 40 40 H 1.08998 * 109.47111 * 69.99885 * 7 5 4 41 41 H 1.09001 * 109.47113 * 310.00288 * 7 5 4 42 42 H 1.08998 * 109.47220 * 59.99910 * 8 7 5 43 43 H 1.08992 * 109.47177 * 299.99527 * 8 7 5 44 44 H 0.96997 * 119.99535 * 0.02562 * 9 8 7 45 45 H 0.97001 * 119.99593 * 0.02562 * 14 12 10 46 46 H 1.08006 * 125.81655 * 0.02562 * 16 15 14 47 47 H 0.96999 * 120.00193 * 180.02562 * 22 21 19 48 48 H 1.07997 * 126.25020 * 359.97438 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0597 2.8274 0.0000 6 6 3.7097 3.5101 -1.2528 7 6 5.5086 2.8734 0.2375 8 6 5.9401 4.3213 0.4791 9 7 7.3850 4.3671 0.7166 10 6 7.9918 5.5468 0.9540 11 8 7.3413 6.5712 0.9714 12 6 9.4644 5.5934 1.1966 13 8 10.1151 4.5687 1.1796 14 7 10.0712 6.7731 1.4345 15 6 11.4548 6.8170 1.6619 16 6 12.3287 5.7141 1.6719 17 7 13.5393 6.1491 1.9132 18 7 13.4863 7.5393 2.0750 19 6 14.5515 8.3627 2.3437 20 1 14.4176 9.4344 2.3501 21 6 15.8038 7.8174 2.6019 22 7 15.9940 6.5240 2.4815 23 14 17.2161 8.9248 3.1200 24 1 17.3111 8.9453 4.6018 25 1 18.4858 8.4074 2.5496 26 1 16.9741 10.3022 2.6204 27 6 12.1894 7.9310 1.9130 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8909 36 1 3.9337 0.9285 0.8890 37 1 4.2160 3.0227 -2.0859 38 1 2.6313 3.4611 -1.4043 39 1 4.0219 4.5530 -1.1978 40 1 6.0322 2.4787 -0.6332 41 1 5.7527 2.2707 1.1123 42 1 5.4164 4.7160 1.3498 43 1 5.6961 4.9239 -0.3956 44 1 7.9050 3.5484 0.7023 45 1 9.5512 7.5919 1.4484 46 1 12.0489 4.6844 1.5048 47 1 16.8678 6.1434 2.6620 48 1 11.8155 8.9424 1.9734 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746406935.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:15 Heat of formation + Delta-G solvation = -12.739979 kcal Electronic energy + Delta-G solvation = -27579.411921 eV Core-core repulsion = 23477.387013 eV Total energy + Delta-G solvation = -4102.024908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03168 -41.18208 -39.59731 -39.00031 -36.67907 -35.96242 -35.20082 -34.82493 -32.29969 -31.08749 -29.90719 -29.24246 -27.53746 -26.89098 -25.32147 -23.57354 -22.88099 -22.19864 -21.77427 -21.57127 -21.19961 -19.64372 -19.13616 -17.82732 -17.45102 -17.24140 -16.90506 -16.75964 -16.69193 -16.20853 -15.76800 -15.66795 -15.52537 -15.35316 -15.01435 -14.88884 -14.71457 -14.41041 -14.13257 -13.64551 -13.52097 -13.38464 -13.20736 -13.01163 -13.00765 -12.86632 -12.64986 -12.51876 -12.28322 -12.09301 -12.06381 -11.96975 -11.84645 -11.66596 -11.33515 -11.07788 -10.87122 -10.60741 -10.32464 -10.14053 -9.36688 -8.62631 -8.49329 -6.26841 0.27536 1.25658 1.29474 1.42314 1.59508 1.72428 2.03744 2.11622 2.50440 2.53115 2.83943 3.06780 3.11618 3.53647 3.76457 3.94989 4.03252 4.11162 4.26577 4.39676 4.39965 4.40940 4.50108 4.52673 4.61144 4.71595 4.74142 4.81558 4.88724 4.95693 4.96355 4.98570 5.01163 5.06803 5.13134 5.13946 5.21601 5.30381 5.30916 5.41513 5.50264 5.89543 5.97640 6.00792 6.06578 6.24673 6.47766 6.67143 6.78816 7.06453 7.41334 7.62631 8.50175 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.046081 B = 0.001457 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.473400 B =19206.370942 C =19630.428285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.055 3.945 5 N -0.548 5.548 6 C 0.014 3.986 7 C 0.049 3.951 8 C 0.124 3.876 9 N -0.687 5.687 10 C 0.526 3.474 11 O -0.540 6.540 12 C 0.487 3.513 13 O -0.543 6.543 14 N -0.582 5.582 15 C -0.059 4.059 16 C -0.046 4.046 17 N -0.310 5.310 18 N -0.162 5.162 19 C -0.355 4.355 20 H 0.142 0.858 21 C -0.003 4.003 22 N -0.820 5.820 23 Si 1.019 2.981 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.244 1.244 27 C -0.074 4.074 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.029 0.971 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.420 0.580 45 H 0.423 0.577 46 H 0.176 0.824 47 H 0.278 0.722 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.634 -7.827 -5.435 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.150 4.150 4 C -0.072 4.072 5 N -0.272 5.272 6 C -0.134 4.134 7 C -0.079 4.079 8 C 0.001 3.999 9 N -0.341 5.341 10 C 0.306 3.694 11 O -0.417 6.417 12 C 0.269 3.731 13 O -0.421 6.421 14 N -0.227 5.227 15 C -0.165 4.165 16 C -0.222 4.222 17 N -0.141 5.141 18 N 0.070 4.930 19 C -0.486 4.486 20 H 0.159 0.841 21 C -0.215 4.215 22 N -0.448 5.448 23 Si 0.838 3.162 24 H -0.192 1.192 25 H -0.200 1.200 26 H -0.166 1.166 27 C -0.225 4.225 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.068 0.932 41 H 0.110 0.890 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.257 0.743 45 H 0.261 0.739 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -24.531 -8.083 -4.901 26.289 hybrid contribution 0.249 -0.007 -0.598 0.648 sum -24.281 -8.090 -5.499 26.178 Atomic orbital electron populations 1.21762 0.95495 1.01871 1.01865 1.21477 0.96208 0.96195 1.02163 1.21582 0.93797 0.97089 1.02490 1.22200 0.96156 0.87590 1.01269 1.61862 1.12411 1.17110 1.35851 1.22575 1.02298 0.99280 0.89199 1.22189 0.88517 0.94943 1.02299 1.21461 0.77729 0.98189 1.02497 1.45577 1.10133 1.09023 1.69323 1.19606 0.87037 0.84678 0.78077 1.90744 1.66117 1.33945 1.50937 1.20240 0.88829 0.83874 0.80186 1.90646 1.66102 1.33953 1.51433 1.42078 1.05377 1.09924 1.65289 1.17312 0.83659 0.93841 1.21685 1.24246 0.90356 0.99811 1.07779 1.78149 1.19665 0.89986 1.26333 1.44831 1.05128 1.04659 1.38424 1.20671 0.86705 0.91066 1.50154 0.84113 1.26868 1.02001 0.97834 0.94833 1.70372 1.24610 1.13262 1.36547 0.84576 0.74895 0.78121 0.78622 1.19160 1.20034 1.16644 1.22014 0.84904 0.99210 1.16360 0.92782 0.92715 0.92399 0.91954 0.91842 0.91758 0.91803 0.94453 0.90374 0.95195 0.90130 0.91220 0.93186 0.89013 0.90570 0.90895 0.74269 0.73885 0.80684 0.91222 0.79470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.91 71.98 0.71 -0.51 16 2 C -0.12 -1.03 5.93 30.59 0.18 -0.85 16 3 C -0.11 -1.09 5.15 30.59 0.16 -0.93 16 4 C 0.06 0.60 4.96 86.30 0.43 1.03 16 5 N -0.55 -7.15 4.76 -922.45 -4.39 -11.54 16 6 C 0.01 0.17 9.13 127.69 1.17 1.33 16 7 C 0.05 0.64 5.07 86.30 0.44 1.08 16 8 C 0.12 2.16 5.60 86.38 0.48 2.64 16 9 N -0.69 -14.83 5.55 -464.57 -2.58 -17.41 16 10 C 0.53 15.11 7.88 87.23 0.69 15.80 16 11 O -0.54 -17.02 16.47 -3.27 -0.05 -17.08 16 12 C 0.49 17.13 7.85 87.23 0.69 17.82 16 13 O -0.54 -21.66 13.62 -3.41 -0.05 -21.71 16 14 N -0.58 -21.39 5.45 -305.33 -1.66 -23.05 16 15 C -0.06 -2.70 6.90 37.83 0.26 -2.44 16 16 C -0.05 -2.46 10.84 85.44 0.93 -1.54 16 17 N -0.31 -18.35 10.41 -56.43 -0.59 -18.94 16 18 N -0.16 -8.93 3.73 -189.98 -0.71 -9.64 16 19 C -0.35 -18.58 10.24 84.02 0.86 -17.72 16 20 H 0.14 6.40 7.84 -2.91 -0.02 6.38 16 21 C 0.00 -0.16 5.50 84.96 0.47 0.31 16 22 N -0.82 -46.52 11.83 21.66 0.26 -46.27 16 23 Si 1.02 37.99 29.56 68.60 2.03 40.02 16 24 H -0.27 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.28 -10.12 7.11 99.48 0.71 -9.42 16 26 H -0.24 -8.21 7.11 99.48 0.71 -7.50 16 27 C -0.07 -3.43 11.50 83.41 0.96 -2.47 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.61 6.47 -2.39 -0.02 0.60 16 35 H 0.04 0.39 8.12 -2.39 -0.02 0.37 16 36 H 0.08 0.82 7.93 -2.39 -0.02 0.80 16 37 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.08 0.81 6.30 -2.38 -0.02 0.80 16 39 H 0.07 0.87 6.47 -2.39 -0.02 0.85 16 40 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 41 H 0.09 1.09 7.93 -2.39 -0.02 1.08 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.31 6.55 -2.39 -0.02 1.29 16 44 H 0.42 8.15 7.94 -92.71 -0.74 7.41 16 45 H 0.42 13.10 8.29 -92.71 -0.77 12.33 16 46 H 0.18 9.09 5.92 -2.91 -0.02 9.07 16 47 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 48 H 0.19 6.94 8.06 -2.91 -0.02 6.91 16 Total: -1.00 -71.23 398.55 0.15 -71.08 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.51 Total: 40.98 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 8.41 Total: 13.55 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -9.67 Total: -126.84 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.10 Total: -38.78 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -71.23 0.15 -71.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746406935.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.337 kcal (2) G-P(sol) polarization free energy of solvation -71.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds