Wall clock time and date at job start Tue Mar 31 2020 20:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 6 6 N 1.46901 * 109.47143 * 294.99574 * 3 2 1 7 7 C 1.46901 * 111.00344 * 298.95794 * 6 3 2 8 8 C 1.46896 * 111.00055 * 175.00016 * 6 3 2 9 9 C 1.53000 * 109.47308 * 190.00053 * 8 6 3 10 10 N 1.46496 * 109.47545 * 180.02562 * 9 8 6 11 11 C 1.34771 * 120.00100 * 180.02562 * 10 9 8 12 12 O 1.21362 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.49312 * 119.99869 * 179.97438 * 11 10 9 14 14 O 1.21405 * 120.00295 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00245 * 179.97438 * 13 11 10 16 16 C 1.40288 * 120.00107 * 180.02562 * 15 13 11 17 17 C 1.40726 * 126.10103 * 359.69736 * 16 15 13 18 18 N 1.30875 * 108.37108 * 179.81351 * 17 16 15 19 19 N 1.40061 * 108.44257 * 0.44028 * 18 17 16 20 20 C 1.37289 * 126.05864 * 179.69651 * 19 18 17 21 21 H 1.07994 * 120.00158 * 180.02562 * 20 19 18 22 22 C 1.39008 * 120.00230 * 0.02753 * 20 19 18 23 23 N 1.31285 * 119.99609 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00336 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46920 * 59.99679 * 24 22 20 26 26 H 1.48496 * 109.47128 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46977 * 299.99577 * 24 22 20 28 28 C 1.35789 * 126.09758 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09000 * 109.47312 * 60.00037 * 5 3 2 35 35 H 1.09004 * 109.46964 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47359 * 299.99610 * 5 3 2 37 37 H 1.09009 * 109.46998 * 59.99545 * 7 6 3 38 38 H 1.09000 * 109.47209 * 179.97438 * 7 6 3 39 39 H 1.09000 * 109.46934 * 300.00222 * 7 6 3 40 40 H 1.08998 * 109.47588 * 310.00338 * 8 6 3 41 41 H 1.09005 * 109.46986 * 70.00369 * 8 6 3 42 42 H 1.08999 * 109.47552 * 300.00575 * 9 8 6 43 43 H 1.09005 * 109.46838 * 60.00226 * 9 8 6 44 44 H 0.97002 * 119.99586 * 0.02562 * 10 9 8 45 45 H 0.96998 * 119.99422 * 0.02562 * 15 13 11 46 46 H 1.07999 * 125.80886 * 359.96985 * 17 16 15 47 47 H 0.97000 * 119.99944 * 180.02562 * 23 22 20 48 48 H 1.08002 * 126.25524 * 359.96827 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0992 -1.2553 7 6 2.2407 1.4131 -2.4128 8 6 2.0208 3.5209 -1.2419 9 6 1.3865 4.2241 -2.4436 10 7 1.7553 5.6418 -2.4306 11 6 1.3074 6.4635 -3.4004 12 8 0.5988 6.0290 -4.2847 13 6 1.6829 7.9086 -3.3868 14 8 2.3921 8.3433 -2.5024 15 7 1.2354 8.7304 -4.3568 16 6 1.5887 10.0880 -4.3443 17 6 2.3938 10.7264 -3.3828 18 7 2.5020 11.9894 -3.7084 19 7 1.7657 12.2098 -4.8793 20 6 1.6274 13.4090 -5.5333 21 1 1.0332 13.4680 -6.4331 22 6 2.2523 14.5474 -5.0372 23 7 2.9744 14.4757 -3.9431 24 14 2.0648 16.1789 -5.9274 25 1 0.6283 16.5520 -5.9795 26 1 2.8225 17.2291 -5.2008 27 1 2.5939 16.0525 -7.3091 28 6 1.2103 11.0215 -5.2550 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.9052 -0.7161 35 1 3.9282 2.4719 0.1253 36 1 3.8532 0.9570 1.0571 37 1 1.8948 0.3796 -2.4374 38 1 1.9366 1.9195 -3.3289 39 1 3.3275 1.4306 -2.3310 40 1 1.6624 3.9809 -0.3210 41 1 3.1054 3.6151 -1.2968 42 1 1.7449 3.7642 -3.3645 43 1 0.3019 4.1300 -2.3887 44 1 2.3220 5.9890 -1.7240 45 1 0.6691 8.3830 -5.0636 46 1 2.8474 10.2540 -2.5241 47 1 3.4101 15.2701 -3.5967 48 1 0.5844 10.8540 -6.1191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746411920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:41 Heat of formation + Delta-G solvation = 19.918362 kcal Electronic energy + Delta-G solvation = -28184.266432 eV Core-core repulsion = 24083.657696 eV Total energy + Delta-G solvation = -4100.608736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.51228 -39.61767 -39.17817 -37.90705 -35.60371 -34.32362 -33.33370 -33.05661 -30.34453 -30.23112 -29.18389 -28.03229 -26.62424 -25.33432 -24.38574 -23.47387 -21.92663 -21.04661 -20.43129 -19.84217 -19.46322 -18.16107 -17.46038 -17.07787 -16.18951 -16.05193 -15.54941 -15.35447 -15.31463 -15.00909 -14.87637 -14.48345 -14.12645 -14.05922 -13.85431 -13.67730 -13.44013 -13.18844 -12.98493 -12.83818 -12.53799 -12.35207 -12.22519 -11.73959 -11.65425 -11.59689 -11.57672 -11.47882 -11.27334 -11.25509 -11.10766 -10.91824 -10.85620 -10.58350 -10.29296 -9.29242 -9.22613 -9.14529 -8.88056 -8.71002 -8.13424 -6.78441 -6.60706 -4.28172 1.65305 2.50973 2.94258 3.03384 3.07207 3.32665 3.48579 3.71337 3.78562 4.04740 4.31224 4.36639 4.45728 4.60809 4.61768 4.70273 4.78988 4.92327 4.97852 5.00899 5.02401 5.09537 5.12913 5.23140 5.26454 5.37948 5.45754 5.59617 5.61471 5.64474 5.68646 5.76114 5.87217 6.05261 6.14078 6.19841 6.35504 6.62093 6.64565 6.75009 6.88161 6.90999 7.15834 7.19853 7.75442 7.84925 8.09605 8.17944 8.48081 8.69001 9.30752 9.59383 10.35025 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.001623 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.287390 B =17246.362975 C =17647.120490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.190 4.190 6 N -0.527 5.527 7 C 0.010 3.990 8 C 0.041 3.959 9 C 0.121 3.879 10 N -0.705 5.705 11 C 0.517 3.483 12 O -0.527 6.527 13 C 0.484 3.516 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.322 4.322 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.768 5.768 24 Si 0.936 3.064 25 H -0.266 1.266 26 H -0.276 1.276 27 H -0.266 1.266 28 C -0.077 4.077 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.413 0.587 45 H 0.409 0.591 46 H 0.178 0.822 47 H 0.276 0.724 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.661 -24.558 5.650 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.103 0.897 5 C -0.249 4.249 6 N -0.251 5.251 7 C -0.138 4.138 8 C -0.087 4.087 9 C -0.002 4.002 10 N -0.360 5.360 11 C 0.298 3.702 12 O -0.403 6.403 13 C 0.264 3.736 14 O -0.401 6.401 15 N -0.225 5.225 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.092 5.092 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.135 0.865 22 C -0.171 4.171 23 N -0.394 5.394 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.201 1.201 27 H -0.191 1.191 28 C -0.229 4.229 29 H 0.086 0.914 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.249 0.751 45 H 0.244 0.756 46 H 0.194 0.806 47 H 0.087 0.913 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.541 -23.325 6.070 24.151 hybrid contribution 0.445 -0.135 -0.599 0.759 sum -1.096 -23.461 5.470 24.115 Atomic orbital electron populations 1.21676 0.95019 1.00925 1.02702 1.21621 0.96982 0.94950 1.01900 1.21803 0.93325 0.95658 0.92095 0.89743 1.22500 0.97542 1.02332 1.02520 1.62088 1.58997 1.01253 1.02794 1.22596 0.97510 1.00052 0.93661 1.22262 0.98631 0.88925 0.98914 1.21363 1.01171 0.79280 0.98416 1.45600 1.52443 1.09156 1.28761 1.20251 0.80482 0.87464 0.82039 1.90738 1.36409 1.77338 1.35785 1.19635 0.83645 0.86339 0.83931 1.90653 1.37280 1.76049 1.36154 1.42143 1.47518 1.06976 1.25903 1.17258 1.14147 0.82572 1.03610 1.24143 1.02915 0.91984 1.01168 1.78259 1.17181 1.14153 0.99561 1.44554 1.26174 1.05033 1.14694 1.19884 1.33406 0.82793 1.09399 0.86465 1.25665 0.95091 1.00406 0.95943 1.70198 1.22307 1.30176 1.16716 0.85868 0.79189 0.79569 0.79395 1.19087 1.20090 1.19092 1.21309 1.10985 0.86779 1.03804 0.91407 0.93466 0.93066 0.91751 0.91791 0.92159 0.92308 0.91912 0.90837 0.90943 0.94958 0.89821 0.93604 0.91050 0.90129 0.75117 0.75569 0.80564 0.91298 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.80 37.16 0.36 -0.51 16 2 C -0.12 -0.64 5.22 -26.73 -0.14 -0.78 16 3 C 0.08 0.48 2.35 -67.71 -0.16 0.32 16 4 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 5 C -0.19 -1.08 8.50 37.16 0.32 -0.76 16 6 N -0.53 -3.67 4.20 -234.89 -0.99 -4.66 16 7 C 0.01 0.06 8.63 60.07 0.52 0.58 16 8 C 0.04 0.30 4.51 -3.83 -0.02 0.28 16 9 C 0.12 1.15 5.60 -4.04 -0.02 1.13 16 10 N -0.71 -8.19 5.55 -60.78 -0.34 -8.52 16 11 C 0.52 7.80 7.88 -11.65 -0.09 7.71 16 12 O -0.53 -8.76 16.47 5.49 0.09 -8.67 16 13 C 0.48 8.73 7.85 -11.65 -0.09 8.64 16 14 O -0.52 -10.51 13.62 5.45 0.07 -10.43 16 15 N -0.58 -11.03 5.45 -10.45 -0.06 -11.09 16 16 C -0.07 -1.62 6.90 -83.92 -0.58 -2.20 16 17 C -0.03 -0.68 10.85 -17.02 -0.18 -0.87 16 18 N -0.26 -7.48 10.39 30.81 0.32 -7.16 16 19 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 20 C -0.32 -8.44 10.25 -14.82 -0.15 -8.59 16 21 H 0.12 2.72 7.83 -52.49 -0.41 2.31 16 22 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 23 N -0.77 -21.14 11.81 55.50 0.66 -20.48 16 24 Si 0.94 18.66 29.55 -169.99 -5.02 13.63 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 26 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 28 C -0.08 -1.82 11.50 -16.38 -0.19 -2.01 16 29 H 0.07 0.48 7.75 -51.93 -0.40 0.08 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.35 6.17 -51.93 -0.32 0.03 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.35 6.39 -51.93 -0.33 0.02 16 35 H 0.06 0.36 6.75 -51.93 -0.35 0.01 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.42 6.22 -51.92 -0.32 0.10 16 38 H 0.07 0.50 6.30 -51.93 -0.33 0.17 16 39 H 0.03 0.20 6.28 -51.93 -0.33 -0.12 16 40 H 0.08 0.59 8.00 -51.93 -0.42 0.17 16 41 H 0.05 0.33 6.94 -51.93 -0.36 -0.03 16 42 H 0.07 0.70 6.47 -51.93 -0.34 0.37 16 43 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.41 4.36 7.94 -40.82 -0.32 4.04 16 45 H 0.41 6.69 8.29 -40.82 -0.34 6.35 16 46 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 47 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.15 2.93 8.06 -52.49 -0.42 2.51 16 LS Contribution 389.80 15.07 5.87 5.87 Total: -1.00 -32.11 389.80 -6.92 -39.04 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.97 Total: 12.22 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.52 Total: 4.04 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.45 Total: -55.70 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.10 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.02 Total: 13.63 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.11 -6.92 -39.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.954 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds