Wall clock time and date at job start Tue Mar 31 2020 20:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.47170 * 54.99895 * 3 2 1 5 5 C 1.53002 * 109.46776 * 174.99999 * 3 2 1 6 6 N 1.46901 * 109.47143 * 294.99574 * 3 2 1 7 7 C 1.46901 * 111.00344 * 298.95794 * 6 3 2 8 8 C 1.46896 * 111.00055 * 175.00016 * 6 3 2 9 9 C 1.53000 * 109.47308 * 190.00053 * 8 6 3 10 10 N 1.46496 * 109.47545 * 180.02562 * 9 8 6 11 11 C 1.34771 * 120.00100 * 180.02562 * 10 9 8 12 12 O 1.21362 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.49312 * 119.99869 * 179.97438 * 11 10 9 14 14 O 1.21405 * 120.00295 * 0.02562 * 13 11 10 15 15 N 1.34781 * 120.00245 * 179.97438 * 13 11 10 16 16 C 1.40288 * 120.00107 * 180.02562 * 15 13 11 17 17 C 1.40726 * 126.10103 * 359.69736 * 16 15 13 18 18 N 1.30875 * 108.37108 * 179.81351 * 17 16 15 19 19 N 1.40061 * 108.44257 * 0.44028 * 18 17 16 20 20 C 1.37289 * 126.05864 * 179.69651 * 19 18 17 21 21 H 1.07994 * 120.00158 * 180.02562 * 20 19 18 22 22 C 1.39008 * 120.00230 * 0.02753 * 20 19 18 23 23 N 1.31285 * 119.99609 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00336 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46920 * 59.99679 * 24 22 20 26 26 H 1.48496 * 109.47128 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.46977 * 299.99577 * 24 22 20 28 28 C 1.35789 * 126.09758 * 179.97438 * 16 15 13 29 29 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 30 30 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 33 33 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 34 34 H 1.09000 * 109.47312 * 60.00037 * 5 3 2 35 35 H 1.09004 * 109.46964 * 179.97438 * 5 3 2 36 36 H 1.08994 * 109.47359 * 299.99610 * 5 3 2 37 37 H 1.09009 * 109.46998 * 59.99545 * 7 6 3 38 38 H 1.09000 * 109.47209 * 179.97438 * 7 6 3 39 39 H 1.09000 * 109.46934 * 300.00222 * 7 6 3 40 40 H 1.08998 * 109.47588 * 310.00338 * 8 6 3 41 41 H 1.09005 * 109.46986 * 70.00369 * 8 6 3 42 42 H 1.08999 * 109.47552 * 300.00575 * 9 8 6 43 43 H 1.09005 * 109.46838 * 60.00226 * 9 8 6 44 44 H 0.97002 * 119.99586 * 0.02562 * 10 9 8 45 45 H 0.96998 * 119.99422 * 0.02562 * 15 13 11 46 46 H 1.07999 * 125.80886 * 359.96985 * 17 16 15 47 47 H 0.97000 * 119.99944 * 180.02562 * 23 22 20 48 48 H 1.08002 * 126.25524 * 359.96827 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 3.5648 1.4443 0.1257 6 7 1.6514 2.0992 -1.2553 7 6 2.2407 1.4131 -2.4128 8 6 2.0208 3.5209 -1.2419 9 6 1.3865 4.2241 -2.4436 10 7 1.7553 5.6418 -2.4306 11 6 1.3074 6.4635 -3.4004 12 8 0.5988 6.0290 -4.2847 13 6 1.6829 7.9086 -3.3868 14 8 2.3921 8.3433 -2.5024 15 7 1.2354 8.7304 -4.3568 16 6 1.5887 10.0880 -4.3443 17 6 2.3938 10.7264 -3.3828 18 7 2.5020 11.9894 -3.7084 19 7 1.7657 12.2098 -4.8793 20 6 1.6274 13.4090 -5.5333 21 1 1.0332 13.4680 -6.4331 22 6 2.2523 14.5474 -5.0372 23 7 2.9744 14.4757 -3.9431 24 14 2.0648 16.1789 -5.9274 25 1 0.6283 16.5520 -5.9795 26 1 2.8225 17.2291 -5.2008 27 1 2.5939 16.0525 -7.3091 28 6 1.2103 11.0215 -5.2550 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.9052 -0.7161 35 1 3.9282 2.4719 0.1253 36 1 3.8532 0.9570 1.0571 37 1 1.8948 0.3796 -2.4374 38 1 1.9366 1.9195 -3.3289 39 1 3.3275 1.4306 -2.3310 40 1 1.6624 3.9809 -0.3210 41 1 3.1054 3.6151 -1.2968 42 1 1.7449 3.7642 -3.3645 43 1 0.3019 4.1300 -2.3887 44 1 2.3220 5.9890 -1.7240 45 1 0.6691 8.3830 -5.0636 46 1 2.8474 10.2540 -2.5241 47 1 3.4101 15.2701 -3.5967 48 1 0.5844 10.8540 -6.1191 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000746411920.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:40 Heat of formation + Delta-G solvation = -3.875537 kcal Electronic energy + Delta-G solvation = -28185.298213 eV Core-core repulsion = 24083.657696 eV Total energy + Delta-G solvation = -4101.640517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.02825 -41.18581 -39.92818 -39.31331 -36.69104 -35.87166 -34.97786 -33.89027 -32.29631 -30.80771 -30.05989 -29.66042 -27.48812 -26.88124 -25.43289 -24.39043 -22.94414 -22.60783 -21.79915 -21.24020 -20.42000 -19.62684 -19.13015 -17.94189 -17.44435 -17.23211 -17.14105 -16.77005 -16.34581 -16.10808 -15.78103 -15.54281 -15.51697 -15.05469 -14.96750 -14.83428 -14.56305 -14.55018 -14.17820 -13.64172 -13.50662 -13.38011 -13.05214 -12.96992 -12.88984 -12.88218 -12.78868 -12.51556 -12.21966 -12.12873 -12.07850 -12.06455 -11.96267 -11.58361 -11.36738 -11.05329 -10.87272 -10.60192 -10.31021 -10.13932 -9.24075 -8.62386 -8.48559 -6.26529 0.28006 1.26426 1.30950 1.42179 1.57567 1.73207 2.04140 2.12259 2.51672 2.53467 2.85408 3.07910 3.14413 3.54071 3.76908 3.89991 4.01317 4.16221 4.31621 4.38996 4.39865 4.50717 4.52540 4.54317 4.60053 4.73270 4.79254 4.82805 4.88360 4.95707 4.97706 4.98235 5.04660 5.12284 5.17535 5.21787 5.23679 5.27413 5.30619 5.41302 5.56716 5.89616 5.98366 6.07076 6.14169 6.24937 6.48125 6.67349 6.79330 7.06800 7.41241 7.62918 8.50420 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039634 B = 0.001623 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.287390 B =17246.362975 C =17647.120490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.083 0.917 5 C -0.186 4.186 6 N -0.534 5.534 7 C 0.010 3.990 8 C 0.048 3.952 9 C 0.124 3.876 10 N -0.687 5.687 11 C 0.526 3.474 12 O -0.540 6.540 13 C 0.487 3.513 14 O -0.543 6.543 15 N -0.582 5.582 16 C -0.058 4.058 17 C -0.048 4.048 18 N -0.308 5.308 19 N -0.163 5.163 20 C -0.355 4.355 21 H 0.142 0.858 22 C -0.004 4.004 23 N -0.821 5.821 24 Si 1.020 2.980 25 H -0.254 1.254 26 H -0.277 1.277 27 H -0.254 1.254 28 C -0.075 4.075 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.419 0.581 45 H 0.423 0.577 46 H 0.176 0.824 47 H 0.278 0.722 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -25.830 4.885 26.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.028 4.028 4 H 0.101 0.899 5 C -0.245 4.245 6 N -0.258 5.258 7 C -0.138 4.138 8 C -0.080 4.080 9 C 0.002 3.998 10 N -0.340 5.340 11 C 0.306 3.694 12 O -0.418 6.418 13 C 0.268 3.732 14 O -0.421 6.421 15 N -0.227 5.227 16 C -0.164 4.164 17 C -0.223 4.223 18 N -0.140 5.140 19 N 0.069 4.931 20 C -0.486 4.486 21 H 0.159 0.841 22 C -0.216 4.216 23 N -0.448 5.448 24 Si 0.838 3.162 25 H -0.178 1.178 26 H -0.202 1.202 27 H -0.178 1.178 28 C -0.226 4.226 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.257 0.743 45 H 0.261 0.739 46 H 0.193 0.807 47 H 0.088 0.912 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -2.246 -24.664 5.317 25.330 hybrid contribution 0.642 0.022 -0.289 0.704 sum -1.603 -24.642 5.028 25.201 Atomic orbital electron populations 1.21641 0.95452 1.01037 1.01935 1.21606 0.96503 0.94619 1.02421 1.21826 0.93640 0.95876 0.91498 0.89915 1.22459 0.97085 1.02078 1.02875 1.62082 1.59328 1.01000 1.03408 1.22600 0.97648 1.00309 0.93199 1.22171 0.98681 0.89189 0.97984 1.21472 1.01032 0.77742 0.99603 1.45582 1.51146 1.09737 1.27559 1.19604 0.80850 0.86141 0.82808 1.90745 1.37358 1.77064 1.36602 1.20252 0.82405 0.87604 0.82897 1.90646 1.37845 1.76849 1.36776 1.42083 1.48208 1.05456 1.26954 1.17301 1.12505 0.84348 1.02248 1.24253 1.04071 0.91932 1.02043 1.78155 1.18954 1.15622 1.01239 1.44829 1.27055 1.06361 1.14812 1.20630 1.34404 0.83109 1.10468 0.84094 1.26879 0.93957 1.04404 0.96401 1.70370 1.24049 1.31430 1.18980 0.84644 0.79608 0.73784 0.78143 1.17777 1.20179 1.17768 1.22008 1.10264 0.85757 1.04556 0.92658 0.92950 0.93278 0.91583 0.90893 0.92210 0.92801 0.91227 0.90189 0.91459 0.94700 0.89285 0.93104 0.90931 0.90631 0.74317 0.73897 0.80687 0.91224 0.79504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.80 71.98 0.71 -0.83 16 2 C -0.11 -1.05 5.22 30.59 0.16 -0.89 16 3 C 0.08 0.83 2.35 44.92 0.11 0.94 16 4 H 0.08 0.91 8.03 -2.39 -0.02 0.89 16 5 C -0.19 -1.78 8.50 71.98 0.61 -1.17 16 6 N -0.53 -6.60 4.20 -897.04 -3.77 -10.37 16 7 C 0.01 0.12 8.63 127.69 1.10 1.22 16 8 C 0.05 0.62 4.51 86.30 0.39 1.01 16 9 C 0.12 2.15 5.60 86.38 0.48 2.64 16 10 N -0.69 -14.83 5.55 -464.56 -2.58 -17.41 16 11 C 0.53 15.12 7.88 87.23 0.69 15.81 16 12 O -0.54 -17.05 16.47 -3.28 -0.05 -17.10 16 13 C 0.49 17.15 7.85 87.23 0.69 17.83 16 14 O -0.54 -21.67 13.62 -3.42 -0.05 -21.71 16 15 N -0.58 -21.44 5.45 -305.32 -1.66 -23.10 16 16 C -0.06 -2.66 6.90 37.83 0.26 -2.40 16 17 C -0.05 -2.53 10.85 85.44 0.93 -1.60 16 18 N -0.31 -18.25 10.39 -56.43 -0.59 -18.83 16 19 N -0.16 -8.95 3.73 -189.98 -0.71 -9.66 16 20 C -0.36 -18.61 10.25 84.02 0.86 -17.75 16 21 H 0.14 6.39 7.83 -2.91 -0.02 6.37 16 22 C 0.00 -0.21 5.50 84.96 0.47 0.25 16 23 N -0.82 -46.60 11.81 21.66 0.26 -46.35 16 24 Si 1.02 37.99 29.55 68.60 2.03 40.02 16 25 H -0.25 -8.86 7.11 99.48 0.71 -8.16 16 26 H -0.28 -10.20 7.11 99.48 0.71 -9.50 16 27 H -0.25 -8.86 7.11 99.48 0.71 -8.15 16 28 C -0.07 -3.48 11.50 83.41 0.96 -2.52 16 29 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.60 6.17 -2.39 -0.01 0.58 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.06 0.58 6.39 -2.39 -0.02 0.57 16 35 H 0.05 0.57 6.75 -2.38 -0.02 0.55 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.08 0.80 6.22 -2.38 -0.01 0.78 16 38 H 0.07 0.83 6.30 -2.39 -0.02 0.81 16 39 H 0.03 0.38 6.28 -2.39 -0.01 0.36 16 40 H 0.09 1.08 8.00 -2.39 -0.02 1.06 16 41 H 0.05 0.63 6.94 -2.38 -0.02 0.61 16 42 H 0.07 1.30 6.47 -2.39 -0.02 1.28 16 43 H 0.08 1.45 8.14 -2.38 -0.02 1.43 16 44 H 0.42 8.19 7.94 -92.71 -0.74 7.45 16 45 H 0.42 13.13 8.29 -92.71 -0.77 12.36 16 46 H 0.18 9.10 5.92 -2.91 -0.02 9.08 16 47 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 48 H 0.19 6.94 8.06 -2.91 -0.02 6.92 16 Total: -1.00 -70.90 389.80 0.79 -70.12 By element: Atomic # 1 Polarization: 42.36 SS G_CDS: -0.49 Total: 41.86 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: 8.41 Total: 12.54 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -9.05 Total: -125.72 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -0.10 Total: -38.81 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Total: -70.90 0.79 -70.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411920.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.240 kcal (2) G-P(sol) polarization free energy of solvation -70.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds