Wall clock time and date at job start Tue Mar 31 2020 20:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47216 * 2 1 4 4 H 1.09002 * 109.46752 * 304.99733 * 3 2 1 5 5 C 1.52998 * 109.47039 * 184.99924 * 3 2 1 6 6 N 1.46899 * 109.47400 * 64.99808 * 3 2 1 7 7 C 1.46898 * 111.00001 * 66.04677 * 6 3 2 8 8 C 1.46897 * 111.00039 * 190.00036 * 6 3 2 9 9 C 1.52996 * 109.47178 * 169.99988 * 8 6 3 10 10 N 1.46500 * 109.47633 * 179.97438 * 9 8 6 11 11 C 1.34773 * 120.00436 * 179.97438 * 10 9 8 12 12 O 1.21360 * 119.99931 * 0.02562 * 11 10 9 13 13 C 1.49307 * 119.99928 * 180.02562 * 11 10 9 14 14 O 1.21401 * 120.00309 * 0.02562 * 13 11 10 15 15 N 1.34782 * 120.00109 * 180.02562 * 13 11 10 16 16 C 1.40290 * 120.00180 * 180.02562 * 15 13 11 17 17 C 1.40723 * 126.09871 * 359.68838 * 16 15 13 18 18 N 1.30878 * 108.37315 * 179.85292 * 17 16 15 19 19 N 1.40062 * 108.43850 * 0.40511 * 18 17 16 20 20 C 1.37294 * 126.05902 * 179.73700 * 19 18 17 21 21 H 1.07999 * 120.00069 * 174.13065 * 20 19 18 22 22 C 1.39008 * 119.99663 * 354.12821 * 20 19 18 23 23 N 1.31281 * 120.00121 * 5.93495 * 22 20 19 24 24 Si 1.86807 * 119.99880 * 185.93495 * 22 20 19 25 25 H 1.48489 * 109.47196 * 94.98221 * 24 22 20 26 26 H 1.48501 * 109.47045 * 214.98381 * 24 22 20 27 27 H 1.48506 * 109.46903 * 334.98060 * 24 22 20 28 28 C 1.35784 * 126.09871 * 180.02562 * 16 15 13 29 29 H 1.09005 * 109.47472 * 60.00263 * 1 2 3 30 30 H 1.09001 * 109.47516 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47244 * 300.00135 * 1 2 3 32 32 H 1.08999 * 109.46814 * 239.99641 * 2 1 3 33 33 H 1.09005 * 109.46950 * 119.99794 * 2 1 3 34 34 H 1.09004 * 109.47367 * 60.00121 * 5 3 2 35 35 H 1.09001 * 109.47365 * 179.97438 * 5 3 2 36 36 H 1.08992 * 109.47195 * 299.99612 * 5 3 2 37 37 H 1.09000 * 109.46993 * 183.95346 * 7 6 3 38 38 H 1.09007 * 109.47290 * 303.95488 * 7 6 3 39 39 H 1.08998 * 109.47164 * 63.95549 * 7 6 3 40 40 H 1.09005 * 109.47289 * 50.00525 * 8 6 3 41 41 H 1.08996 * 109.47462 * 290.00214 * 8 6 3 42 42 H 1.09005 * 109.47660 * 300.00323 * 9 8 6 43 43 H 1.09005 * 109.47293 * 59.99906 * 9 8 6 44 44 H 0.97002 * 119.99457 * 0.02562 * 10 9 8 45 45 H 0.97001 * 119.99337 * 0.02562 * 15 13 11 46 46 H 1.07996 * 125.81288 * 359.97438 * 17 16 15 47 47 H 0.96996 * 120.00015 * 179.97438 * 23 22 20 48 48 H 1.08005 * 126.25368 * 359.93951 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 1.6514 2.0993 1.2552 7 6 2.3340 1.4873 2.4029 8 6 1.9125 3.5437 1.1963 9 6 1.2734 4.2273 2.4067 10 7 1.5343 5.6677 2.3484 11 6 1.0633 6.4776 3.3171 12 8 0.4234 6.0137 4.2381 13 6 1.3288 7.9457 3.2573 14 8 1.9684 8.4099 2.3358 15 7 0.8582 8.7557 4.2263 16 6 1.1071 10.1352 4.1698 17 6 1.8344 10.8062 3.1692 18 7 1.8496 12.0830 3.4563 19 7 1.1443 12.2769 4.6507 20 6 0.9416 13.4783 5.2836 21 1 0.3015 13.5300 6.1520 22 6 1.5602 14.6282 4.8066 23 7 2.2431 14.5895 3.6861 24 14 1.4198 16.2284 5.7601 25 1 2.6036 16.3841 6.6429 26 1 1.3580 17.3674 4.8093 27 1 0.1859 16.2057 6.5862 28 6 0.6948 11.0602 5.0743 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.8532 0.9569 -1.0571 35 1 3.9282 2.4719 -0.1262 36 1 3.9994 0.9053 0.7161 37 1 1.9759 1.9451 3.3250 38 1 2.1239 0.4179 2.4227 39 1 3.4088 1.6448 2.3127 40 1 1.4857 3.9531 0.2806 41 1 2.9882 3.7192 1.2058 42 1 0.1976 4.0518 2.3972 43 1 1.7001 3.8179 3.3224 44 1 2.0454 6.0385 1.6121 45 1 0.3474 8.3847 4.9628 46 1 2.2990 10.3461 2.3097 47 1 2.6745 15.3919 3.3531 48 1 0.1159 10.8682 5.9656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000746411921.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:45 Heat of formation + Delta-G solvation = 18.980221 kcal Electronic energy + Delta-G solvation = -28179.540593 eV Core-core repulsion = 24078.891176 eV Total energy + Delta-G solvation = -4100.649417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.51366 -39.61264 -39.16394 -37.90886 -35.60380 -34.32597 -33.34573 -33.06671 -30.34915 -30.23459 -29.13139 -28.03770 -26.66962 -25.33362 -24.36411 -23.47038 -21.91880 -21.04829 -20.43187 -19.86326 -19.46522 -18.16530 -17.46355 -17.06090 -16.19121 -16.04793 -15.56018 -15.35764 -15.30987 -15.01130 -14.86085 -14.45476 -14.11694 -14.05895 -13.84007 -13.70109 -13.44673 -13.21199 -12.99181 -12.85712 -12.49656 -12.33741 -12.24308 -11.75341 -11.66555 -11.58231 -11.57809 -11.50210 -11.32281 -11.22925 -11.09715 -10.91670 -10.84905 -10.55187 -10.29144 -9.29523 -9.23891 -9.14434 -8.88098 -8.71567 -8.13429 -6.78663 -6.61668 -4.28579 1.65140 2.50809 2.92863 3.03520 3.08754 3.32490 3.48176 3.71075 3.78254 4.04646 4.31320 4.36325 4.45539 4.60761 4.62554 4.70191 4.79745 4.92425 4.96546 5.01475 5.02503 5.10541 5.12392 5.22587 5.27671 5.38817 5.44173 5.60306 5.61528 5.64292 5.69283 5.76062 5.87000 6.06428 6.13969 6.19606 6.35618 6.62262 6.64433 6.74930 6.88693 6.90737 7.15564 7.19688 7.75436 7.84954 8.09371 8.17761 8.47874 8.68717 9.30747 9.59089 10.34446 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.039072 B = 0.001624 C = 0.001590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.462782 B =17236.196592 C =17610.855559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.189 4.189 6 N -0.528 5.528 7 C 0.011 3.989 8 C 0.041 3.959 9 C 0.122 3.878 10 N -0.705 5.705 11 C 0.517 3.483 12 O -0.527 6.527 13 C 0.484 3.516 14 O -0.524 6.524 15 N -0.583 5.583 16 C -0.070 4.070 17 C -0.026 4.026 18 N -0.261 5.261 19 N -0.138 5.138 20 C -0.323 4.323 21 H 0.118 0.882 22 C 0.047 3.953 23 N -0.767 5.767 24 Si 0.936 3.064 25 H -0.271 1.271 26 H -0.275 1.275 27 H -0.263 1.263 28 C -0.076 4.076 29 H 0.050 0.950 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.413 0.587 45 H 0.409 0.591 46 H 0.178 0.822 47 H 0.276 0.724 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -24.777 -5.071 25.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.029 4.029 4 H 0.102 0.898 5 C -0.248 4.248 6 N -0.251 5.251 7 C -0.137 4.137 8 C -0.087 4.087 9 C -0.002 4.002 10 N -0.360 5.360 11 C 0.298 3.702 12 O -0.403 6.403 13 C 0.265 3.735 14 O -0.401 6.401 15 N -0.226 5.226 16 C -0.176 4.176 17 C -0.202 4.202 18 N -0.092 5.092 19 N 0.095 4.905 20 C -0.455 4.455 21 H 0.136 0.864 22 C -0.171 4.171 23 N -0.393 5.393 24 Si 0.759 3.241 25 H -0.196 1.196 26 H -0.201 1.201 27 H -0.187 1.187 28 C -0.228 4.228 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.249 0.751 45 H 0.244 0.756 46 H 0.194 0.806 47 H 0.086 0.914 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.084 -23.549 -5.519 24.188 hybrid contribution 0.548 -0.102 0.622 0.836 sum 0.465 -23.651 -4.897 24.157 Atomic orbital electron populations 1.21674 0.95042 1.00916 1.02671 1.21591 0.96962 0.94918 1.01797 1.21804 0.93357 0.95756 0.92004 0.89808 1.22495 0.97489 1.02264 1.02544 1.62072 1.57874 1.01939 1.03260 1.22578 0.96694 1.00554 0.93847 1.22269 0.99157 0.88467 0.98805 1.21355 1.01870 0.78642 0.98339 1.45603 1.55836 1.07580 1.26949 1.20249 0.79727 0.87862 0.82398 1.90737 1.38832 1.77042 1.33653 1.19634 0.83172 0.86580 0.84152 1.90652 1.39865 1.75677 1.33931 1.42145 1.50674 1.05491 1.24245 1.17260 1.15800 0.81447 1.03067 1.24140 1.03766 0.91397 1.00887 1.78254 1.18053 1.14332 0.98566 1.44562 1.28680 1.04086 1.13197 1.19939 1.31185 0.82326 1.12076 0.86403 1.25668 0.95237 1.00296 0.95862 1.70211 1.23711 1.29492 1.15933 0.85790 0.79409 0.79650 0.79202 1.19585 1.20053 1.18700 1.21317 1.12678 0.85814 1.02960 0.93118 0.93483 0.91381 0.91829 0.91827 0.91937 0.92416 0.92086 0.90954 0.90927 0.94954 0.89825 0.93658 0.90129 0.91060 0.75119 0.75564 0.80565 0.91361 0.83315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.80 37.16 0.36 -0.52 16 2 C -0.11 -0.63 5.33 -26.73 -0.14 -0.78 16 3 C 0.08 0.48 2.31 -67.72 -0.16 0.32 16 4 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 5 C -0.19 -1.06 8.44 37.16 0.31 -0.75 16 6 N -0.53 -3.66 4.17 -234.89 -0.98 -4.64 16 7 C 0.01 0.07 8.44 60.06 0.51 0.58 16 8 C 0.04 0.30 4.64 -3.83 -0.02 0.29 16 9 C 0.12 1.15 5.60 -4.04 -0.02 1.13 16 10 N -0.71 -8.18 5.55 -60.78 -0.34 -8.52 16 11 C 0.52 7.80 7.88 -11.65 -0.09 7.70 16 12 O -0.53 -8.75 16.47 5.49 0.09 -8.66 16 13 C 0.48 8.72 7.85 -11.65 -0.09 8.63 16 14 O -0.52 -10.50 13.62 5.45 0.07 -10.42 16 15 N -0.58 -11.02 5.45 -10.46 -0.06 -11.07 16 16 C -0.07 -1.62 6.90 -83.93 -0.58 -2.19 16 17 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 18 N -0.26 -7.49 10.41 30.81 0.32 -7.17 16 19 N -0.14 -3.76 3.73 -11.40 -0.04 -3.81 16 20 C -0.32 -8.45 10.24 -14.82 -0.15 -8.60 16 21 H 0.12 2.75 7.84 -52.49 -0.41 2.34 16 22 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 23 N -0.77 -21.13 11.84 55.50 0.66 -20.47 16 24 Si 0.94 18.67 29.56 -169.99 -5.02 13.65 16 25 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 26 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 27 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 28 C -0.08 -1.79 11.50 -16.38 -0.19 -1.98 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.49 7.75 -51.93 -0.40 0.09 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.35 6.26 -51.93 -0.33 0.02 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.35 6.91 -51.93 -0.36 -0.01 16 36 H 0.06 0.35 6.42 -51.93 -0.33 0.01 16 37 H 0.07 0.49 6.47 -51.93 -0.34 0.16 16 38 H 0.07 0.42 6.21 -51.92 -0.32 0.09 16 39 H 0.03 0.20 6.46 -51.93 -0.34 -0.13 16 40 H 0.08 0.58 7.93 -51.93 -0.41 0.17 16 41 H 0.05 0.32 7.06 -51.93 -0.37 -0.04 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.70 6.55 -51.93 -0.34 0.36 16 44 H 0.41 4.36 7.94 -40.82 -0.32 4.03 16 45 H 0.41 6.68 8.29 -40.82 -0.34 6.34 16 46 H 0.18 4.42 5.92 -52.49 -0.31 4.11 16 47 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.15 2.93 8.06 -52.48 -0.42 2.51 16 LS Contribution 390.40 15.07 5.88 5.88 Total: -1.00 -32.13 390.40 -6.95 -39.08 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -7.00 Total: 12.08 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -0.54 Total: 4.07 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.44 Total: -55.68 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.16 Total: -19.08 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.13 -6.95 -39.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000746411921.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.058 kcal (2) G-P(sol) polarization free energy of solvation -32.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds