Wall clock time and date at job start Tue Mar 31 2020 19:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47047 * 2 1 4 4 N 1.31130 * 126.55155 * 89.99943 * 3 2 1 5 5 C 1.34491 * 105.61370 * 180.02562 * 4 3 2 6 6 C 1.50708 * 126.28244 * 179.97438 * 5 4 3 7 7 N 1.46894 * 109.47301 * 90.00118 * 6 5 4 8 8 C 1.46963 * 110.99746 * 293.79936 * 7 6 5 9 9 C 1.53055 * 109.36395 * 176.81271 * 8 7 6 10 10 N 1.46956 * 109.36416 * 58.39725 * 9 8 7 11 11 C 1.46899 * 110.99902 * 176.81045 * 10 9 8 12 12 C 1.50702 * 109.47196 * 293.80014 * 11 10 9 13 13 O 1.21278 * 119.99889 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99916 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00045 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47214 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47099 * 120.00485 * 20 18 16 23 23 H 1.48503 * 109.47225 * 240.00192 * 20 18 16 24 24 C 1.46950 * 110.88187 * 300.68087 * 10 9 8 25 25 C 1.46956 * 111.00196 * 170.00056 * 7 6 5 26 26 N 1.29941 * 107.42679 * 0.24152 * 5 4 3 27 27 O 1.21304 * 110.24851 * 359.58176 * 26 5 4 28 28 H 1.09002 * 109.47251 * 60.00308 * 1 2 3 29 29 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47181 * 299.99963 * 1 2 3 31 31 H 1.09007 * 109.47265 * 240.00572 * 2 1 3 32 32 H 1.08992 * 109.47046 * 120.00194 * 2 1 3 33 33 H 1.09002 * 109.46926 * 329.99719 * 6 5 4 34 34 H 1.09004 * 109.46862 * 210.00177 * 6 5 4 35 35 H 1.09003 * 109.48613 * 296.77787 * 8 7 6 36 36 H 1.08994 * 109.49091 * 56.84241 * 8 7 6 37 37 H 1.08994 * 109.48838 * 298.43235 * 9 8 7 38 38 H 1.09004 * 109.48400 * 178.36395 * 9 8 7 39 39 H 1.09001 * 109.46732 * 53.80062 * 11 10 9 40 40 H 1.09005 * 109.46849 * 173.80089 * 11 10 9 41 41 H 0.97003 * 119.99649 * 359.97438 * 14 12 11 42 42 H 1.08997 * 109.46401 * 299.99358 * 15 14 12 43 43 H 1.08994 * 109.47061 * 59.99073 * 15 14 12 44 44 H 0.96997 * 120.00138 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.48721 * 299.35316 * 24 10 9 46 46 H 1.09004 * 109.49418 * 179.28931 * 24 10 9 47 47 H 1.09000 * 109.48237 * 303.15282 * 25 7 6 48 48 H 1.08994 * 109.48936 * 63.21821 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1571 1.0534 5 6 2.7108 3.3416 0.5728 6 6 3.1324 4.5365 1.3887 7 7 4.5753 4.4638 1.6541 8 6 4.8943 3.3216 2.5221 9 6 6.4108 3.2343 2.7092 10 7 6.9027 4.4898 3.2935 11 6 8.3457 4.4171 3.5589 12 6 8.6075 3.3969 4.6368 13 8 7.6829 2.7906 5.1352 14 7 9.8689 3.1592 5.0477 15 6 10.1234 2.1671 6.0952 16 6 11.6037 2.0926 6.3675 17 1 12.2866 2.7211 5.8152 18 6 12.0861 1.2221 7.3217 19 7 11.2546 0.4564 7.9938 20 14 13.9212 1.1293 7.6587 21 1 14.6357 2.0856 6.7755 22 1 14.1819 1.4778 9.0785 23 1 14.4046 -0.2490 7.3905 24 6 6.5838 5.6319 2.4256 25 6 5.0673 5.7192 2.2385 26 7 2.6790 3.2684 -0.7242 27 8 2.2970 2.1714 -1.0735 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.5889 4.5413 2.3336 34 1 2.9099 5.4499 0.8371 35 1 4.4154 3.4570 3.4919 36 1 4.5311 2.4027 2.0620 37 1 6.8877 3.0717 1.7426 38 1 6.6478 2.4053 3.3761 39 1 8.8684 4.1254 2.6479 40 1 8.7044 5.3927 3.8871 41 1 10.6083 3.6445 4.6493 42 1 9.6003 2.4582 7.0060 43 1 9.7652 1.1916 5.7664 44 1 11.5940 -0.1562 8.6649 45 1 7.0627 5.4965 1.4558 46 1 6.9469 6.5509 2.8856 47 1 4.8302 6.5482 1.5716 48 1 4.5904 5.8818 3.2050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750051240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:08 Heat of formation + Delta-G solvation = 46.442014 kcal Electronic energy + Delta-G solvation = -28810.102064 eV Core-core repulsion = 24710.643479 eV Total energy + Delta-G solvation = -4099.458585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.83689 -39.74514 -38.44671 -36.51601 -35.58408 -34.52955 -34.06038 -32.32690 -31.47604 -30.96293 -29.79648 -27.76932 -26.26239 -25.29454 -24.16487 -23.72451 -23.16617 -22.22233 -21.19281 -19.85138 -19.62553 -18.39758 -17.69055 -17.10863 -16.45486 -15.95051 -15.67696 -15.34738 -15.28342 -15.22465 -14.97255 -14.74588 -14.50882 -14.20540 -13.99108 -13.69973 -13.47592 -13.11250 -12.93846 -12.66572 -12.51831 -12.29253 -12.21111 -11.99255 -11.89374 -11.74974 -11.66437 -11.45741 -11.26697 -11.25973 -10.98422 -10.97559 -10.90768 -10.76818 -10.30757 -10.16336 -9.37425 -9.00722 -8.73234 -8.65164 -8.19925 -7.84093 -6.16586 -4.23392 0.89770 1.91710 2.52509 3.23248 3.25941 3.30261 3.33314 3.40208 3.66210 3.72362 3.81483 4.26125 4.43628 4.49701 4.54351 4.56935 4.73700 4.83787 4.97118 5.02729 5.17479 5.19492 5.21229 5.25772 5.28871 5.35376 5.38272 5.41150 5.47067 5.52150 5.59526 5.62360 5.64162 5.68496 5.73319 5.82190 6.03098 6.16416 6.63479 6.74600 7.00695 7.13518 7.33775 7.46870 7.53144 7.68531 7.93878 7.97665 8.65100 8.79944 9.14230 9.43527 10.93637 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.001995 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.882037 B =14034.186186 C =15323.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.031 4.031 3 C 0.179 3.821 4 N -0.476 5.476 5 C 0.181 3.819 6 C 0.146 3.854 7 N -0.538 5.538 8 C 0.062 3.938 9 C 0.055 3.945 10 N -0.520 5.520 11 C 0.036 3.964 12 C 0.499 3.501 13 O -0.539 6.539 14 N -0.715 5.715 15 C 0.251 3.749 16 C -0.543 4.543 17 H 0.063 0.937 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.058 3.942 25 C 0.062 3.938 26 N -0.371 5.371 27 O 0.076 5.924 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.105 0.895 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.389 0.611 42 H 0.027 0.973 43 H 0.026 0.974 44 H 0.265 0.735 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.590 5.916 -18.616 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.070 4.070 3 C -0.042 4.042 4 N -0.210 5.210 5 C -0.092 4.092 6 C 0.016 3.984 7 N -0.265 5.265 8 C -0.066 4.066 9 C -0.073 4.073 10 N -0.245 5.245 11 C -0.095 4.095 12 C 0.283 3.717 13 O -0.417 6.417 14 N -0.364 5.364 15 C 0.130 3.870 16 C -0.581 4.581 17 H 0.081 0.919 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C -0.071 4.071 25 C -0.066 4.066 26 N -0.078 5.078 27 O 0.017 5.983 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.088 0.912 34 H 0.119 0.881 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.123 0.877 39 H 0.076 0.924 40 H 0.117 0.883 41 H 0.222 0.778 42 H 0.045 0.955 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.985 6.099 -18.163 27.686 hybrid contribution 1.424 -0.011 0.005 1.424 sum -18.561 6.088 -18.158 26.670 Atomic orbital electron populations 1.21787 0.92484 1.03518 1.03087 1.20221 0.97204 0.83398 1.06172 1.28882 0.95982 0.98612 0.80743 1.71931 1.17743 1.02436 1.28888 1.25594 0.99702 0.95713 0.88228 1.20221 0.89447 0.91418 0.97282 1.62149 1.11901 1.04738 1.47676 1.22197 0.96147 0.93065 0.95170 1.22339 0.93717 0.93330 0.97899 1.61799 1.13306 1.03561 1.45857 1.21997 0.89154 1.00410 0.97951 1.20294 0.83724 0.83810 0.83913 1.90624 1.43196 1.50603 1.57272 1.46457 1.06548 1.42555 1.40871 1.19079 0.96139 0.86573 0.85161 1.21273 0.91640 1.23382 1.21797 0.91863 1.24961 0.98527 0.95110 0.95500 1.69987 1.34526 1.23748 1.24005 0.86363 0.84389 0.77971 0.78188 1.19652 1.20795 1.20808 1.22167 0.95002 0.94465 0.95441 1.22140 0.95281 0.90832 0.98349 1.74635 1.17539 0.99862 1.15757 1.85299 1.59727 1.17414 1.35873 0.91931 0.90363 0.91663 0.87940 0.87055 0.91235 0.88102 0.93045 0.90416 0.94957 0.87683 0.92407 0.88289 0.77834 0.95536 0.95650 0.92512 0.94029 0.89918 0.90051 0.93240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.89 37.16 0.37 -0.22 16 2 C -0.03 -0.15 6.56 -27.88 -0.18 -0.33 16 3 C 0.18 1.65 7.77 -13.06 -0.10 1.55 16 4 N -0.48 -5.55 10.77 -9.87 -0.11 -5.66 16 5 C 0.18 2.17 6.83 -156.38 -1.07 1.10 16 6 C 0.15 1.52 5.59 -4.98 -0.03 1.49 16 7 N -0.54 -6.39 4.70 -235.90 -1.11 -7.50 16 8 C 0.06 0.86 5.44 -3.76 -0.02 0.84 16 9 C 0.05 0.85 5.26 -3.77 -0.02 0.83 16 10 N -0.52 -7.64 4.44 -235.91 -1.05 -8.69 16 11 C 0.04 0.53 5.45 -4.98 -0.03 0.50 16 12 C 0.50 9.96 7.53 -10.98 -0.08 9.88 16 13 O -0.54 -12.92 14.34 5.56 0.08 -12.84 16 14 N -0.72 -15.05 5.55 -61.48 -0.34 -15.39 16 15 C 0.25 6.69 5.43 -5.19 -0.03 6.66 16 16 C -0.54 -14.77 9.28 -34.44 -0.32 -15.09 16 17 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.06 0.65 5.61 -3.77 -0.02 0.62 16 25 C 0.06 0.63 5.61 -3.77 -0.02 0.61 16 26 N -0.37 -4.60 12.16 30.90 0.38 -4.22 16 27 O 0.08 0.81 11.31 18.12 0.20 1.02 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 34 H 0.10 0.87 8.03 -51.93 -0.42 0.46 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.12 6.59 -51.93 -0.34 0.78 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.11 1.94 5.85 -51.93 -0.30 1.63 16 39 H 0.06 0.76 8.12 -51.93 -0.42 0.34 16 40 H 0.10 1.22 8.03 -51.93 -0.42 0.81 16 41 H 0.39 6.98 8.32 -40.82 -0.34 6.65 16 42 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 393.76 15.07 5.93 5.93 Total: -1.00 -34.64 393.76 -9.63 -44.27 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.68 Total: 2.56 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -1.65 Total: 10.08 kcal Atomic # 7 Polarization: -65.41 SS G_CDS: -1.49 Total: -66.91 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.28 Total: -11.83 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.64 -9.63 -44.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750051240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.715 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds