Wall clock time and date at job start Tue Mar 31 2020 19:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47047 * 2 1 4 4 N 1.31130 * 126.55155 * 89.99943 * 3 2 1 5 5 C 1.34491 * 105.61370 * 180.02562 * 4 3 2 6 6 C 1.50708 * 126.28244 * 179.97438 * 5 4 3 7 7 N 1.46894 * 109.47301 * 90.00118 * 6 5 4 8 8 C 1.46963 * 110.99746 * 293.79936 * 7 6 5 9 9 C 1.53055 * 109.36395 * 176.81271 * 8 7 6 10 10 N 1.46956 * 109.36416 * 58.39725 * 9 8 7 11 11 C 1.46899 * 110.99902 * 176.81045 * 10 9 8 12 12 C 1.50702 * 109.47196 * 293.80014 * 11 10 9 13 13 O 1.21278 * 119.99889 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99916 * 180.02562 * 12 11 10 15 15 C 1.46501 * 120.00045 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47214 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99711 * 359.97438 * 16 15 14 18 18 C 1.37871 * 119.99908 * 179.97438 * 16 15 14 19 19 N 1.31517 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47142 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47099 * 120.00485 * 20 18 16 23 23 H 1.48503 * 109.47225 * 240.00192 * 20 18 16 24 24 C 1.46950 * 110.88187 * 300.68087 * 10 9 8 25 25 C 1.46956 * 111.00196 * 170.00056 * 7 6 5 26 26 N 1.29941 * 107.42679 * 0.24152 * 5 4 3 27 27 O 1.21304 * 110.24851 * 359.58176 * 26 5 4 28 28 H 1.09002 * 109.47251 * 60.00308 * 1 2 3 29 29 H 1.09000 * 109.46836 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47181 * 299.99963 * 1 2 3 31 31 H 1.09007 * 109.47265 * 240.00572 * 2 1 3 32 32 H 1.08992 * 109.47046 * 120.00194 * 2 1 3 33 33 H 1.09002 * 109.46926 * 329.99719 * 6 5 4 34 34 H 1.09004 * 109.46862 * 210.00177 * 6 5 4 35 35 H 1.09003 * 109.48613 * 296.77787 * 8 7 6 36 36 H 1.08994 * 109.49091 * 56.84241 * 8 7 6 37 37 H 1.08994 * 109.48838 * 298.43235 * 9 8 7 38 38 H 1.09004 * 109.48400 * 178.36395 * 9 8 7 39 39 H 1.09001 * 109.46732 * 53.80062 * 11 10 9 40 40 H 1.09005 * 109.46849 * 173.80089 * 11 10 9 41 41 H 0.97003 * 119.99649 * 359.97438 * 14 12 11 42 42 H 1.08997 * 109.46401 * 299.99358 * 15 14 12 43 43 H 1.08994 * 109.47061 * 59.99073 * 15 14 12 44 44 H 0.96997 * 120.00138 * 179.97438 * 19 18 16 45 45 H 1.09003 * 109.48721 * 299.35316 * 24 10 9 46 46 H 1.09004 * 109.49418 * 179.28931 * 24 10 9 47 47 H 1.09000 * 109.48237 * 303.15282 * 25 7 6 48 48 H 1.08994 * 109.48936 * 63.21821 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2926 2.1571 1.0534 5 6 2.7108 3.3416 0.5728 6 6 3.1324 4.5365 1.3887 7 7 4.5753 4.4638 1.6541 8 6 4.8943 3.3216 2.5221 9 6 6.4108 3.2343 2.7092 10 7 6.9027 4.4898 3.2935 11 6 8.3457 4.4171 3.5589 12 6 8.6075 3.3969 4.6368 13 8 7.6829 2.7906 5.1352 14 7 9.8689 3.1592 5.0477 15 6 10.1234 2.1671 6.0952 16 6 11.6037 2.0926 6.3675 17 1 12.2866 2.7211 5.8152 18 6 12.0861 1.2221 7.3217 19 7 11.2546 0.4564 7.9938 20 14 13.9212 1.1293 7.6587 21 1 14.6357 2.0856 6.7755 22 1 14.1819 1.4778 9.0785 23 1 14.4046 -0.2490 7.3905 24 6 6.5838 5.6319 2.4256 25 6 5.0673 5.7192 2.2385 26 7 2.6790 3.2684 -0.7242 27 8 2.2970 2.1714 -1.0735 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 2.5889 4.5413 2.3336 34 1 2.9099 5.4499 0.8371 35 1 4.4154 3.4570 3.4919 36 1 4.5311 2.4027 2.0620 37 1 6.8877 3.0717 1.7426 38 1 6.6478 2.4053 3.3761 39 1 8.8684 4.1254 2.6479 40 1 8.7044 5.3927 3.8871 41 1 10.6083 3.6445 4.6493 42 1 9.6003 2.4582 7.0060 43 1 9.7652 1.1916 5.7664 44 1 11.5940 -0.1562 8.6649 45 1 7.0627 5.4965 1.4558 46 1 6.9469 6.5509 2.8856 47 1 4.8302 6.5482 1.5716 48 1 4.5904 5.8818 3.2050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000750051240.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:08 Heat of formation + Delta-G solvation = 17.165482 kcal Electronic energy + Delta-G solvation = -28811.371589 eV Core-core repulsion = 24710.643479 eV Total energy + Delta-G solvation = -4100.728110 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -46.66446 -41.01327 -39.83173 -37.45900 -36.45875 -36.02380 -35.23161 -34.34654 -32.18781 -31.97018 -30.97025 -29.42274 -27.62315 -25.87049 -25.41004 -24.75151 -24.22832 -23.78240 -21.93074 -21.37471 -20.84208 -19.23996 -18.94584 -18.49193 -17.62498 -17.46392 -16.88661 -16.74542 -16.48404 -16.17911 -16.08227 -15.86000 -15.58726 -15.36543 -15.13248 -15.07858 -14.37726 -14.18872 -14.03769 -13.99561 -13.78099 -13.61761 -13.26527 -13.09395 -12.88091 -12.80183 -12.70545 -12.63019 -12.58620 -12.30601 -12.22720 -12.16475 -11.99058 -11.98507 -11.92039 -11.45815 -10.97569 -10.81762 -10.63951 -9.81038 -9.61243 -9.30667 -8.29758 -6.46402 0.11874 1.08445 1.42614 1.43822 1.57326 1.79865 1.84644 2.26131 2.44887 2.50621 2.88767 2.96555 3.01420 3.05061 3.74698 3.85656 3.93299 4.01727 4.10186 4.15979 4.16913 4.20242 4.29736 4.32454 4.41266 4.44358 4.49467 4.55491 4.55869 4.78844 4.81054 4.84069 4.88322 4.93252 4.97529 5.01080 5.08116 5.11312 5.24328 5.31337 5.49296 5.66054 5.72202 5.76477 5.85129 5.96952 6.09242 6.65400 6.95366 7.13275 7.23370 7.53800 8.82668 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.016080 B = 0.001995 C = 0.001827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.882037 B =14034.186186 C =15323.025883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.031 4.031 3 C 0.188 3.812 4 N -0.507 5.507 5 C 0.171 3.829 6 C 0.147 3.853 7 N -0.541 5.541 8 C 0.076 3.924 9 C 0.063 3.937 10 N -0.539 5.539 11 C 0.051 3.949 12 C 0.493 3.507 13 O -0.585 6.585 14 N -0.710 5.710 15 C 0.269 3.731 16 C -0.555 4.555 17 H 0.085 0.915 18 C 0.001 3.999 19 N -0.931 5.931 20 Si 0.986 3.014 21 H -0.252 1.252 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.058 3.942 25 C 0.061 3.939 26 N -0.391 5.391 27 O 0.073 5.927 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.034 0.966 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.408 0.592 42 H -0.014 1.014 43 H -0.015 1.015 44 H 0.268 0.732 45 H 0.048 0.952 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.510 7.634 -20.474 28.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.070 4.070 3 C -0.032 4.032 4 N -0.241 5.241 5 C -0.102 4.102 6 C 0.018 3.982 7 N -0.267 5.267 8 C -0.052 4.052 9 C -0.066 4.066 10 N -0.265 5.265 11 C -0.080 4.080 12 C 0.280 3.720 13 O -0.465 6.465 14 N -0.361 5.361 15 C 0.146 3.854 16 C -0.593 4.593 17 H 0.103 0.897 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.809 3.191 21 H -0.176 1.176 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.069 4.069 25 C -0.066 4.066 26 N -0.100 5.100 27 O 0.015 5.985 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.147 0.853 32 H 0.133 0.867 33 H 0.090 0.910 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.152 0.848 41 H 0.244 0.756 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.126 0.874 47 H 0.131 0.869 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.907 7.861 -20.067 28.670 hybrid contribution 0.967 -0.591 0.561 1.265 sum -17.941 7.270 -19.505 27.480 Atomic orbital electron populations 1.21778 0.91457 1.04739 1.02434 1.20545 0.97873 0.80960 1.07616 1.29720 0.94091 0.99508 0.79835 1.71947 1.19150 1.02983 1.30045 1.25897 0.99704 0.96260 0.88385 1.20330 0.88494 0.91892 0.97506 1.62146 1.12984 1.04715 1.46902 1.21921 0.94913 0.93872 0.94541 1.22105 0.94774 0.92914 0.96789 1.61755 1.13266 1.04121 1.47348 1.21938 0.89808 0.99781 0.96479 1.21369 0.82410 0.83938 0.84254 1.90614 1.44512 1.52420 1.59003 1.46187 1.08057 1.41852 1.39972 1.18490 0.95932 0.86012 0.84972 1.21665 0.91831 1.23707 1.22070 0.89728 1.26095 1.04207 0.94433 0.95069 1.70150 1.37340 1.24697 1.24826 0.85097 0.77447 0.78335 0.78240 1.17561 1.20459 1.20487 1.22313 0.95654 0.93678 0.95239 1.22275 0.94664 0.90817 0.98887 1.74600 1.18564 1.00795 1.15997 1.85261 1.59833 1.17246 1.36174 0.91754 0.88179 0.93129 0.85328 0.86697 0.91044 0.85912 0.94914 0.91516 0.94788 0.91633 0.89965 0.84831 0.75633 0.99645 0.99740 0.92273 0.93359 0.87403 0.86885 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 71.98 0.71 -0.25 16 2 C -0.03 -0.27 6.56 29.85 0.20 -0.08 16 3 C 0.19 3.44 7.77 88.38 0.69 4.12 16 4 N -0.51 -12.03 10.77 -303.22 -3.26 -15.30 16 5 C 0.17 4.08 6.83 138.47 0.95 5.02 16 6 C 0.15 2.94 5.59 85.56 0.48 3.42 16 7 N -0.54 -12.29 4.70 -900.26 -4.23 -16.52 16 8 C 0.08 2.16 5.44 86.31 0.47 2.63 16 9 C 0.06 1.96 5.26 86.31 0.45 2.42 16 10 N -0.54 -15.19 4.44 -900.28 -4.00 -19.19 16 11 C 0.05 1.38 5.45 85.56 0.47 1.85 16 12 C 0.49 19.97 7.53 87.66 0.66 20.63 16 13 O -0.58 -29.52 14.34 -3.02 -0.04 -29.56 16 14 N -0.71 -30.15 5.55 -466.80 -2.59 -32.74 16 15 C 0.27 14.96 5.43 85.63 0.46 15.42 16 16 C -0.55 -30.40 9.28 25.60 0.24 -30.16 16 17 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.93 -56.74 13.29 21.45 0.28 -56.46 16 20 Si 0.99 42.54 29.54 68.60 2.03 44.56 16 21 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.06 1.13 5.61 86.31 0.48 1.62 16 25 C 0.06 1.10 5.61 86.31 0.48 1.58 16 26 N -0.39 -9.57 12.16 -60.34 -0.73 -10.31 16 27 O 0.07 1.54 11.31 74.89 0.85 2.39 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.13 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 34 H 0.12 1.88 8.03 -2.38 -0.02 1.86 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 2.02 6.59 -2.39 -0.02 2.00 16 37 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.07 2.58 5.85 -2.39 -0.01 2.56 16 39 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 40 H 0.13 2.78 8.03 -2.38 -0.02 2.76 16 41 H 0.41 14.10 8.32 -92.71 -0.77 13.33 16 42 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.11 1.59 8.07 -2.39 -0.02 1.57 16 47 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 48 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -79.98 393.76 -4.31 -84.29 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.20 Total: 20.08 kcal Atomic # 6 Polarization: 21.56 SS G_CDS: 7.20 Total: 28.76 kcal Atomic # 7 Polarization: -135.98 SS G_CDS: -14.54 Total: -150.52 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: 0.80 Total: -27.18 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -79.98 -4.31 -84.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750051240.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.455 kcal (2) G-P(sol) polarization free energy of solvation -79.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds