Wall clock time and date at job start Tue Mar 31 2020 20:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 C 1.53002 * 109.47421 * 240.00473 * 2 1 3 5 5 N 1.46502 * 109.47157 * 119.99931 * 2 1 3 6 6 C 1.34815 * 126.59369 * 75.00225 * 5 2 1 7 7 C 1.36595 * 106.83863 * 179.97438 * 6 5 2 8 8 C 1.47524 * 125.76992 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00194 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00288 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47260 * 180.02562 * 11 10 8 13 13 H 1.09005 * 110.63876 * 303.31300 * 12 11 10 14 14 C 1.54319 * 110.72026 * 66.45976 * 12 11 10 15 15 N 1.47019 * 107.27411 * 140.73488 * 14 12 11 16 16 C 1.36933 * 125.65365 * 181.02085 * 15 14 12 17 17 H 1.08005 * 119.99346 * 13.62994 * 16 15 14 18 18 C 1.38803 * 120.00505 * 193.62301 * 16 15 14 19 19 N 1.31626 * 119.99731 * 27.27804 * 18 16 15 20 20 Si 1.86804 * 120.00452 * 207.27269 * 18 16 15 21 21 H 1.48494 * 109.46849 * 90.00056 * 20 18 16 22 22 H 1.48503 * 109.46862 * 330.00133 * 20 18 16 23 23 H 1.48496 * 109.47029 * 210.00372 * 20 18 16 24 24 C 1.47429 * 108.70035 * 1.28221 * 15 14 12 25 25 C 1.55122 * 104.72375 * 335.55720 * 24 15 14 26 26 H 1.09002 * 111.19237 * 279.18719 * 25 24 15 27 27 O 1.42902 * 110.94245 * 155.28823 * 25 24 15 28 28 N 1.34402 * 108.45844 * 0.24432 * 7 6 5 29 29 N 1.28760 * 109.52249 * 359.58732 * 28 7 6 30 30 H 1.08996 * 109.47004 * 299.99571 * 1 2 3 31 31 H 1.08997 * 109.46640 * 60.00124 * 1 2 3 32 32 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46615 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47644 * 299.99644 * 3 2 1 35 35 H 1.08996 * 109.47001 * 60.00428 * 3 2 1 36 36 H 1.09004 * 109.46589 * 299.99410 * 4 2 1 37 37 H 1.08995 * 109.46915 * 59.99588 * 4 2 1 38 38 H 1.08993 * 109.47089 * 180.02562 * 4 2 1 39 39 H 1.08000 * 126.57827 * 359.94342 * 6 5 2 40 40 H 0.97003 * 119.99585 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.46590 * 60.00215 * 11 10 8 42 42 H 1.08997 * 109.47229 * 300.00877 * 11 10 8 43 43 H 1.09000 * 109.88113 * 21.31392 * 14 12 11 44 44 H 1.09006 * 110.00857 * 260.22355 * 14 12 11 45 45 H 0.96994 * 119.99479 * 5.84381 * 19 18 16 46 46 H 1.09001 * 110.36546 * 94.48417 * 24 15 14 47 47 H 1.08995 * 110.36676 * 216.80510 * 24 15 14 48 48 H 0.96703 * 114.00123 * 67.95196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4105 7 6 2.5639 -2.2215 2.6484 8 6 2.7652 -3.5293 3.3006 9 8 2.4366 -4.5509 2.7288 10 7 3.3124 -3.5918 4.5307 11 6 3.5119 -4.8905 5.1786 12 6 4.1437 -4.6815 6.5563 13 1 5.0796 -4.1294 6.4700 14 6 3.1648 -3.9528 7.5009 15 7 3.3041 -4.5647 8.8304 16 6 2.5938 -4.2159 9.9479 17 1 1.7149 -3.5948 9.8570 18 6 3.0032 -4.6605 11.1975 19 7 4.2728 -4.9299 11.4167 20 14 1.7524 -4.8766 12.5681 21 1 1.2094 -6.2581 12.5293 22 1 0.6451 -3.9041 12.3855 23 1 2.4086 -4.6392 13.8789 24 6 4.3396 -5.6119 8.7627 25 6 4.3712 -6.0393 7.2719 26 1 3.5672 -6.7397 7.0456 27 8 5.6421 -6.5937 6.9263 28 7 2.8769 -1.0249 3.1742 29 7 2.5721 -0.0944 2.3380 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7215 -1.2490 39 1 1.6650 -2.7835 0.7335 40 1 3.5735 -2.7768 4.9873 41 1 4.1713 -5.5049 4.5655 42 1 2.5505 -5.3913 5.2922 43 1 2.1430 -4.0748 7.1418 44 1 3.4154 -2.8932 7.5524 45 1 4.9341 -4.7378 10.7337 46 1 5.3064 -5.2094 9.0649 47 1 4.0658 -6.4574 9.3936 48 1 5.8291 -7.4428 7.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958126062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:50 Heat of formation + Delta-G solvation = 29.777810 kcal Electronic energy + Delta-G solvation = -29107.741656 eV Core-core repulsion = 25007.560457 eV Total energy + Delta-G solvation = -4100.181199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.50239 -39.54206 -38.34359 -37.75927 -35.31959 -34.79200 -32.53136 -32.18952 -31.13712 -29.49668 -28.16840 -28.09076 -27.73708 -25.55026 -24.19223 -23.83933 -22.69382 -21.04690 -20.58824 -20.02136 -19.68323 -17.93990 -17.56291 -17.01718 -16.50462 -16.36931 -15.88888 -15.30479 -14.95160 -14.80910 -14.68053 -14.54110 -14.15548 -13.88526 -13.60307 -13.51586 -13.25002 -13.12998 -12.92670 -12.88639 -12.54038 -12.42078 -12.41791 -12.17276 -12.03104 -11.92663 -11.72185 -11.39651 -11.11029 -10.87257 -10.70077 -10.60357 -10.49225 -10.28051 -10.03860 -9.92160 -9.71181 -9.51664 -9.31368 -8.94581 -8.43095 -6.98252 -6.09942 -3.14042 0.92534 1.59018 1.67005 3.13885 3.26472 3.52166 3.54040 3.70816 3.72994 3.98885 4.01037 4.11505 4.41409 4.51172 4.63281 4.66674 4.77774 4.81958 4.93500 4.95902 4.97045 5.01435 5.12497 5.13597 5.14849 5.29343 5.33113 5.39968 5.46869 5.51371 5.60934 5.70281 5.75389 5.84169 5.93995 6.11028 6.14700 6.24925 6.44749 6.56779 6.71873 6.86718 6.95769 7.46752 7.74419 7.80761 8.00293 8.18243 8.46908 9.00419 9.80290 10.32459 11.23137 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002216 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.636337 B =12631.074137 C =13606.531525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.092 3.908 7 C -0.099 4.099 8 C 0.603 3.397 9 O -0.545 6.545 10 N -0.708 5.708 11 C 0.135 3.865 12 C -0.105 4.105 13 H 0.089 0.911 14 C 0.141 3.859 15 N -0.601 5.601 16 C -0.336 4.336 17 H 0.069 0.931 18 C -0.027 4.027 19 N -0.921 5.921 20 Si 1.068 2.932 21 H -0.293 1.293 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.120 3.880 25 C 0.091 3.909 26 H 0.066 0.934 27 O -0.565 6.565 28 N -0.204 5.204 29 N -0.062 5.062 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.201 0.799 40 H 0.410 0.590 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.032 0.968 44 H 0.028 0.972 45 H 0.269 0.731 46 H 0.036 0.964 47 H 0.056 0.944 48 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.842 7.645 -27.453 28.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.207 4.207 4 C -0.221 4.221 5 N -0.138 5.138 6 C -0.065 4.065 7 C -0.239 4.239 8 C 0.387 3.613 9 O -0.422 6.422 10 N -0.358 5.358 11 C 0.011 3.989 12 C -0.124 4.124 13 H 0.107 0.893 14 C 0.015 3.985 15 N -0.329 5.329 16 C -0.463 4.463 17 H 0.087 0.913 18 C -0.228 4.228 19 N -0.562 5.562 20 Si 0.898 3.102 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.216 1.216 24 C -0.007 4.007 25 C 0.031 3.969 26 H 0.084 0.916 27 O -0.370 6.370 28 N -0.078 5.078 29 N -0.042 5.042 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.089 0.911 39 H 0.217 0.783 40 H 0.246 0.754 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.081 0.919 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -4.928 8.324 -25.910 27.656 hybrid contribution -0.062 -0.343 -1.537 1.577 sum -4.990 7.981 -27.447 29.016 Atomic orbital electron populations 1.22296 0.91798 1.03757 1.04133 1.21104 0.95247 0.94162 0.80812 1.21998 1.02591 0.92192 1.03896 1.22304 1.02726 1.01306 0.95783 1.50844 1.42206 1.05215 1.15575 1.23219 0.98321 0.86968 0.97954 1.21486 1.12892 0.93793 0.95699 1.16736 0.77525 0.85802 0.81206 1.90796 1.52112 1.34508 1.64756 1.45810 1.62130 1.10917 1.16920 1.21434 1.00947 0.84095 0.92381 1.22401 0.99924 0.97005 0.93069 0.89273 1.21395 0.95773 0.95395 0.85928 1.44407 1.44935 1.37931 1.05660 1.19817 1.06535 1.34718 0.85263 0.91311 1.25751 0.99488 0.99977 0.97599 1.70761 1.00186 1.49359 1.35909 0.83461 0.74577 0.76322 0.75812 1.22077 1.21877 1.21612 1.22210 0.93304 0.92829 0.92309 1.23093 0.84690 0.93227 0.95907 0.91571 1.86417 1.36991 1.40908 1.72686 1.74683 1.12915 0.97974 1.22214 1.81976 1.15611 1.16957 0.89607 0.91118 0.89602 0.91325 0.91187 0.90110 0.90543 0.91105 0.89359 0.91102 0.78264 0.75416 0.90832 0.90985 0.95030 0.95365 0.91869 0.94665 0.92612 0.77569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.68 8.74 37.16 0.32 -0.35 16 2 C 0.17 0.91 1.25 -131.81 -0.16 0.74 16 3 C -0.15 -0.73 8.11 37.16 0.30 -0.43 16 4 C -0.16 -0.56 8.30 37.16 0.31 -0.25 16 5 N -0.35 -3.21 3.44 -48.35 -0.17 -3.38 16 6 C 0.09 0.91 10.43 -16.83 -0.18 0.74 16 7 C -0.10 -1.30 6.99 -83.55 -0.58 -1.89 16 8 C 0.60 9.04 7.82 -12.48 -0.10 8.94 16 9 O -0.54 -9.22 16.86 5.28 0.09 -9.13 16 10 N -0.71 -10.48 5.40 -61.36 -0.33 -10.81 16 11 C 0.13 2.10 5.01 -4.04 -0.02 2.08 16 12 C -0.10 -1.84 2.74 -88.79 -0.24 -2.09 16 13 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 14 C 0.14 2.95 6.52 -3.07 -0.02 2.93 16 15 N -0.60 -15.38 3.33 -169.94 -0.57 -15.94 16 16 C -0.34 -9.59 10.05 -15.06 -0.15 -9.74 16 17 H 0.07 1.96 7.96 -52.48 -0.42 1.54 16 18 C -0.03 -0.78 5.09 -17.43 -0.09 -0.87 16 19 N -0.92 -28.00 12.82 55.49 0.71 -27.29 16 20 Si 1.07 25.66 30.00 -169.99 -5.10 20.56 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.12 2.78 4.96 -2.41 -0.01 2.77 16 25 C 0.09 1.67 3.89 -24.47 -0.10 1.58 16 26 H 0.07 1.16 8.05 -51.93 -0.42 0.74 16 27 O -0.57 -9.35 13.47 -35.23 -0.47 -9.82 16 28 N -0.20 -2.86 12.04 32.85 0.40 -2.46 16 29 N -0.06 -0.77 12.91 60.35 0.78 0.01 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.47 8.06 -51.93 -0.42 0.05 16 36 H 0.07 0.21 7.44 -51.93 -0.39 -0.17 16 37 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.20 1.39 7.63 -52.49 -0.40 0.99 16 40 H 0.41 5.88 8.01 -40.82 -0.33 5.55 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 43 H 0.03 0.66 7.77 -51.93 -0.40 0.26 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.27 8.22 5.83 -40.82 -0.24 7.98 16 46 H 0.04 0.89 6.84 -51.93 -0.36 0.54 16 47 H 0.06 1.40 7.73 -51.93 -0.40 1.00 16 48 H 0.38 4.69 9.12 45.56 0.42 5.11 16 LS Contribution 395.41 15.07 5.96 5.96 Total: -1.00 -35.94 395.41 -6.21 -42.15 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.79 Total: 5.99 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -0.72 Total: 4.17 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 0.82 Total: -59.87 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.39 Total: -18.95 kcal Atomic # 14 Polarization: 25.66 SS G_CDS: -5.10 Total: 20.56 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.94 -6.21 -42.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958126062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.928 kcal (2) G-P(sol) polarization free energy of solvation -35.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds