Wall clock time and date at job start Tue Mar 31 2020 20:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46781 * 2 1 4 4 C 1.53002 * 109.47421 * 240.00473 * 2 1 3 5 5 N 1.46502 * 109.47157 * 119.99931 * 2 1 3 6 6 C 1.34815 * 126.59369 * 75.00225 * 5 2 1 7 7 C 1.36595 * 106.83863 * 179.97438 * 6 5 2 8 8 C 1.47524 * 125.76992 * 179.97438 * 7 6 5 9 9 O 1.21594 * 119.99866 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00194 * 180.02562 * 8 7 6 11 11 C 1.46497 * 120.00288 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47260 * 180.02562 * 11 10 8 13 13 H 1.09005 * 110.63876 * 303.31300 * 12 11 10 14 14 C 1.54319 * 110.72026 * 66.45976 * 12 11 10 15 15 N 1.47019 * 107.27411 * 140.73488 * 14 12 11 16 16 C 1.36933 * 125.65365 * 181.02085 * 15 14 12 17 17 H 1.08005 * 119.99346 * 13.62994 * 16 15 14 18 18 C 1.38803 * 120.00505 * 193.62301 * 16 15 14 19 19 N 1.31626 * 119.99731 * 27.27804 * 18 16 15 20 20 Si 1.86804 * 120.00452 * 207.27269 * 18 16 15 21 21 H 1.48494 * 109.46849 * 90.00056 * 20 18 16 22 22 H 1.48503 * 109.46862 * 330.00133 * 20 18 16 23 23 H 1.48496 * 109.47029 * 210.00372 * 20 18 16 24 24 C 1.47429 * 108.70035 * 1.28221 * 15 14 12 25 25 C 1.55122 * 104.72375 * 335.55720 * 24 15 14 26 26 H 1.09002 * 111.19237 * 279.18719 * 25 24 15 27 27 O 1.42902 * 110.94245 * 155.28823 * 25 24 15 28 28 N 1.34402 * 108.45844 * 0.24432 * 7 6 5 29 29 N 1.28760 * 109.52249 * 359.58732 * 28 7 6 30 30 H 1.08996 * 109.47004 * 299.99571 * 1 2 3 31 31 H 1.08997 * 109.46640 * 60.00124 * 1 2 3 32 32 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46615 * 179.97438 * 3 2 1 34 34 H 1.08990 * 109.47644 * 299.99644 * 3 2 1 35 35 H 1.08996 * 109.47001 * 60.00428 * 3 2 1 36 36 H 1.09004 * 109.46589 * 299.99410 * 4 2 1 37 37 H 1.08995 * 109.46915 * 59.99588 * 4 2 1 38 38 H 1.08993 * 109.47089 * 180.02562 * 4 2 1 39 39 H 1.08000 * 126.57827 * 359.94342 * 6 5 2 40 40 H 0.97003 * 119.99585 * 0.02562 * 10 8 7 41 41 H 1.09003 * 109.46590 * 60.00215 * 11 10 8 42 42 H 1.08997 * 109.47229 * 300.00877 * 11 10 8 43 43 H 1.09000 * 109.88113 * 21.31392 * 14 12 11 44 44 H 1.09006 * 110.00857 * 260.22355 * 14 12 11 45 45 H 0.96994 * 119.99479 * 5.84381 * 19 18 16 46 46 H 1.09001 * 110.36546 * 94.48417 * 24 15 14 47 47 H 1.08995 * 110.36676 * 216.80510 * 24 15 14 48 48 H 0.96703 * 114.00123 * 67.95196 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4105 7 6 2.5639 -2.2215 2.6484 8 6 2.7652 -3.5293 3.3006 9 8 2.4366 -4.5509 2.7288 10 7 3.3124 -3.5918 4.5307 11 6 3.5119 -4.8905 5.1786 12 6 4.1437 -4.6815 6.5563 13 1 5.0796 -4.1294 6.4700 14 6 3.1648 -3.9528 7.5009 15 7 3.3041 -4.5647 8.8304 16 6 2.5938 -4.2159 9.9479 17 1 1.7149 -3.5948 9.8570 18 6 3.0032 -4.6605 11.1975 19 7 4.2728 -4.9299 11.4167 20 14 1.7524 -4.8766 12.5681 21 1 1.2094 -6.2581 12.5293 22 1 0.6451 -3.9041 12.3855 23 1 2.4086 -4.6392 13.8789 24 6 4.3396 -5.6119 8.7627 25 6 4.3712 -6.0393 7.2719 26 1 3.5672 -6.7397 7.0456 27 8 5.6421 -6.5937 6.9263 28 7 2.8769 -1.0249 3.1742 29 7 2.5721 -0.0944 2.3380 30 1 -0.3633 0.5137 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6768 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7215 -1.2490 39 1 1.6650 -2.7835 0.7335 40 1 3.5735 -2.7768 4.9873 41 1 4.1713 -5.5049 4.5655 42 1 2.5505 -5.3913 5.2922 43 1 2.1430 -4.0748 7.1418 44 1 3.4154 -2.8932 7.5524 45 1 4.9341 -4.7378 10.7337 46 1 5.3064 -5.2094 9.0649 47 1 4.0658 -6.4574 9.3936 48 1 5.8291 -7.4428 7.3496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958126062.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:49 Heat of formation + Delta-G solvation = 1.141559 kcal Electronic energy + Delta-G solvation = -29108.983417 eV Core-core repulsion = 25007.560457 eV Total energy + Delta-G solvation = -4101.422960 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.35140 -40.80878 -39.84538 -38.31662 -36.84052 -36.27995 -34.20537 -33.05256 -32.22289 -31.07389 -29.51898 -28.48736 -28.43098 -27.17937 -25.68765 -24.73749 -23.91833 -22.38505 -21.80544 -21.49887 -20.76750 -19.64973 -18.81027 -18.31802 -17.39714 -17.22211 -17.07967 -16.55002 -16.39038 -15.82773 -15.73147 -15.61771 -15.36279 -15.21748 -14.99478 -14.91092 -14.43290 -14.05495 -13.88908 -13.66490 -13.61917 -13.39443 -13.33860 -13.20483 -12.79898 -12.78842 -12.62683 -12.47544 -12.43648 -12.35738 -12.33146 -11.98455 -11.89433 -11.75967 -11.61929 -11.30510 -11.28712 -10.96141 -10.57369 -10.48011 -10.11334 -9.09404 -8.36239 -5.36995 0.12421 0.56871 1.01359 1.57199 1.64900 1.82775 2.01138 2.17909 2.60270 2.99927 3.12442 3.19813 3.22918 3.45734 3.56121 3.63438 3.71755 3.74782 3.75725 3.89585 3.95225 4.17650 4.26227 4.26543 4.42697 4.48718 4.56402 4.59073 4.64377 4.66506 4.73906 4.78276 4.78914 4.80838 4.81277 4.95449 5.06624 5.09293 5.14937 5.18298 5.25143 5.28850 5.52624 5.60462 6.26200 6.31968 6.78240 6.84867 6.85669 7.04574 7.65240 8.20627 8.96281 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017369 B = 0.002216 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.636337 B =12631.074137 C =13606.531525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.158 3.842 3 C -0.148 4.148 4 C -0.160 4.160 5 N -0.338 5.338 6 C 0.110 3.890 7 C -0.125 4.125 8 C 0.606 3.394 9 O -0.566 6.566 10 N -0.709 5.709 11 C 0.148 3.852 12 C -0.089 4.089 13 H 0.089 0.911 14 C 0.140 3.860 15 N -0.624 5.624 16 C -0.347 4.347 17 H 0.064 0.936 18 C -0.079 4.079 19 N -0.947 5.947 20 Si 1.120 2.880 21 H -0.282 1.282 22 H -0.273 1.273 23 H -0.293 1.293 24 C 0.124 3.876 25 C 0.111 3.889 26 H 0.084 0.916 27 O -0.565 6.565 28 N -0.231 5.231 29 N -0.084 5.084 30 H 0.052 0.948 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.115 0.885 38 H 0.060 0.940 39 H 0.232 0.768 40 H 0.412 0.588 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.022 0.978 45 H 0.256 0.744 46 H 0.009 0.991 47 H 0.030 0.970 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 7.519 -30.229 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.077 3.923 3 C -0.206 4.206 4 C -0.218 4.218 5 N -0.124 5.124 6 C -0.049 4.049 7 C -0.265 4.265 8 C 0.392 3.608 9 O -0.445 6.445 10 N -0.359 5.359 11 C 0.024 3.976 12 C -0.108 4.108 13 H 0.107 0.893 14 C 0.015 3.985 15 N -0.352 5.352 16 C -0.475 4.475 17 H 0.081 0.919 18 C -0.275 4.275 19 N -0.590 5.590 20 Si 0.945 3.055 21 H -0.208 1.208 22 H -0.198 1.198 23 H -0.220 1.220 24 C -0.002 4.002 25 C 0.050 3.950 26 H 0.102 0.898 27 O -0.372 6.372 28 N -0.104 5.104 29 N -0.064 5.064 30 H 0.071 0.929 31 H 0.133 0.867 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.248 0.752 40 H 0.248 0.752 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.049 0.951 48 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -6.348 8.226 -28.726 30.547 hybrid contribution 0.381 -0.220 -0.794 0.908 sum -5.967 8.006 -29.520 31.163 Atomic orbital electron populations 1.22321 0.90466 1.04198 1.04694 1.21622 0.96218 0.94330 0.80091 1.22028 1.01821 0.92169 1.04556 1.22346 1.02129 1.01917 0.95411 1.51222 1.40485 1.05135 1.15540 1.23645 0.96439 0.87713 0.97073 1.21420 1.15048 0.92918 0.97088 1.16908 0.76778 0.86279 0.80869 1.90773 1.53126 1.35363 1.65204 1.45788 1.62279 1.10647 1.17135 1.21231 1.00757 0.84575 0.91004 1.22224 0.99098 0.96101 0.93380 0.89315 1.21490 0.96944 0.95276 0.84756 1.44680 1.45009 1.39083 1.06435 1.20081 1.06485 1.34351 0.86584 0.91862 1.27187 1.00306 0.99730 1.00251 1.70878 1.00881 1.51503 1.35780 0.82778 0.72833 0.77179 0.72753 1.20823 1.19798 1.21974 1.22132 0.91285 0.91308 0.95492 1.22795 0.86100 0.93958 0.92110 0.89848 1.86391 1.35919 1.42348 1.72522 1.74654 1.13943 0.98494 1.23336 1.81896 1.16581 1.17157 0.90736 0.92871 0.86731 0.90949 0.92398 0.87070 0.92256 0.90262 0.86647 0.92084 0.75194 0.75246 0.90001 0.91107 0.94578 0.95965 0.93337 0.97299 0.95133 0.75299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.74 71.98 0.63 -0.28 16 2 C 0.16 1.34 1.25 3.61 0.00 1.35 16 3 C -0.15 -1.23 8.11 71.98 0.58 -0.64 16 4 C -0.16 -0.59 8.30 71.98 0.60 0.01 16 5 N -0.34 -5.74 3.44 -306.88 -1.06 -6.79 16 6 C 0.11 1.99 10.43 83.85 0.87 2.86 16 7 C -0.12 -3.20 6.99 40.82 0.29 -2.92 16 8 C 0.61 17.70 7.82 86.69 0.68 18.37 16 9 O -0.57 -18.43 16.86 -4.01 -0.07 -18.50 16 10 N -0.71 -20.57 5.40 -466.29 -2.52 -23.09 16 11 C 0.15 4.42 5.01 86.38 0.43 4.85 16 12 C -0.09 -3.07 2.74 -9.61 -0.03 -3.09 16 13 H 0.09 3.10 8.14 -2.38 -0.02 3.09 16 14 C 0.14 5.92 6.52 86.73 0.57 6.49 16 15 N -0.62 -32.55 3.33 -691.57 -2.30 -34.85 16 16 C -0.35 -20.14 10.05 84.03 0.84 -19.30 16 17 H 0.06 3.66 7.96 -2.91 -0.02 3.64 16 18 C -0.08 -4.64 5.09 84.86 0.43 -4.20 16 19 N -0.95 -59.18 12.82 21.65 0.28 -58.90 16 20 Si 1.12 52.08 30.00 68.60 2.06 54.14 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 C 0.12 5.91 4.96 86.93 0.43 6.34 16 25 C 0.11 3.98 3.89 32.06 0.12 4.11 16 26 H 0.08 2.76 8.05 -2.39 -0.02 2.74 16 27 O -0.56 -17.75 13.47 -148.98 -2.01 -19.76 16 28 N -0.23 -6.53 12.04 -49.99 -0.60 -7.13 16 29 N -0.08 -2.09 12.91 37.02 0.48 -1.61 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.06 0.71 8.06 -2.39 -0.02 0.69 16 36 H 0.08 0.19 7.44 -2.39 -0.02 0.17 16 37 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.23 2.53 7.63 -2.91 -0.02 2.51 16 40 H 0.41 11.81 8.01 -92.71 -0.74 11.07 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.07 2.17 8.06 -2.39 -0.02 2.15 16 43 H 0.04 1.50 7.77 -2.39 -0.02 1.48 16 44 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.26 16.26 5.83 -92.71 -0.54 15.72 16 46 H 0.01 0.49 6.84 -2.39 -0.02 0.47 16 47 H 0.03 1.58 7.73 -2.39 -0.02 1.56 16 48 H 0.40 9.17 9.12 -74.05 -0.68 8.49 16 Total: -1.00 -79.90 395.41 0.51 -79.39 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.21 Total: 23.17 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 6.46 Total: 13.94 kcal Atomic # 7 Polarization: -126.65 SS G_CDS: -5.72 Total: -132.37 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -2.07 Total: -38.26 kcal Atomic # 14 Polarization: 52.08 SS G_CDS: 2.06 Total: 54.14 kcal Total: -79.90 0.51 -79.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958126062.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.528 kcal (2) G-P(sol) polarization free energy of solvation -79.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds