Wall clock time and date at job start Tue Mar 31 2020 19:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50703 * 109.47347 * 2 1 4 4 C 1.36591 * 126.58265 * 269.97669 * 3 2 1 5 5 C 1.47526 * 125.76902 * 359.97438 * 4 3 2 6 6 O 1.21597 * 119.99920 * 359.72797 * 5 4 3 7 7 N 1.34777 * 120.00028 * 179.97438 * 5 4 3 8 8 C 1.46496 * 119.99875 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47037 * 180.02562 * 8 7 5 10 10 H 1.08997 * 110.88466 * 51.12507 * 9 8 7 11 11 C 1.54908 * 111.00826 * 287.19895 * 9 8 7 12 12 N 1.47419 * 104.83346 * 204.91424 * 11 9 8 13 13 C 1.36940 * 125.64810 * 204.17319 * 12 11 9 14 14 H 1.07995 * 119.99786 * 359.97224 * 13 12 11 15 15 C 1.38811 * 119.99648 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00617 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99523 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47235 * 59.99642 * 17 15 13 19 19 H 1.48504 * 109.46557 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47043 * 299.99591 * 17 15 13 21 21 C 1.47022 * 108.70298 * 24.13369 * 12 11 9 22 22 C 1.54321 * 107.27123 * 358.93160 * 21 12 11 23 23 H 1.09002 * 110.87746 * 219.37591 * 22 21 12 24 24 O 1.42904 * 110.71480 * 96.17494 * 22 21 12 25 25 N 1.34396 * 108.46215 * 180.25887 * 4 3 2 26 26 N 1.28764 * 109.52031 * 359.61144 * 25 4 3 27 27 N 1.34821 * 126.57843 * 90.01621 * 3 2 1 28 28 C 1.46496 * 126.59274 * 359.96605 * 27 3 2 29 29 C 1.52994 * 109.47510 * 90.00226 * 28 27 3 30 30 H 1.08997 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47188 * 299.99806 * 1 2 3 32 32 H 1.09001 * 109.47033 * 60.00244 * 1 2 3 33 33 H 1.09001 * 109.47188 * 240.00194 * 2 1 3 34 34 H 1.09001 * 109.47033 * 119.99756 * 2 1 3 35 35 H 0.96999 * 120.00043 * 0.02562 * 7 5 4 36 36 H 1.08996 * 109.47565 * 300.00629 * 8 7 5 37 37 H 1.09004 * 109.47374 * 60.00435 * 8 7 5 38 38 H 1.09003 * 110.36497 * 323.75410 * 11 9 8 39 39 H 1.08997 * 110.36567 * 86.07282 * 11 9 8 40 40 H 0.97006 * 120.00469 * 180.02562 * 16 15 13 41 41 H 1.09002 * 109.87728 * 239.52135 * 21 12 11 42 42 H 1.08996 * 110.01424 * 118.43190 * 21 12 11 43 43 H 0.96700 * 114.00015 * 66.48052 * 24 22 21 44 44 H 1.09005 * 109.47204 * 210.00211 * 28 27 3 45 45 H 1.09003 * 109.47416 * 329.99981 * 28 27 3 46 46 H 1.08993 * 109.47875 * 179.97438 * 29 28 27 47 47 H 1.09005 * 109.46875 * 300.00187 * 29 28 27 48 48 H 1.09003 * 109.46980 * 59.99489 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3041 2.1882 -1.0968 5 6 2.1561 1.7661 -2.5027 6 8 1.7654 0.6444 -2.7627 7 7 2.4586 2.6222 -3.4987 8 6 2.3121 2.2029 -4.8947 9 6 2.7189 3.3531 -5.8180 10 1 3.6977 3.7453 -5.5421 11 6 1.6493 4.4736 -5.8136 12 7 1.8174 5.1609 -7.1069 13 6 1.4524 6.4527 -7.3775 14 1 0.9981 7.0581 -6.6072 15 6 1.6663 6.9839 -8.6420 16 7 2.2204 6.2463 -9.5807 17 14 1.1691 8.7464 -9.0110 18 1 1.9025 9.6674 -8.1060 19 1 1.5023 9.0696 -10.4216 20 1 -0.2923 8.9032 -8.7986 21 6 2.4426 4.2300 -8.0577 22 6 2.6971 2.9076 -7.3041 23 1 3.6556 2.4752 -7.5912 24 8 1.6356 1.9800 -7.5383 25 7 2.7352 3.3905 -0.6788 26 7 2.7408 3.4219 0.6084 27 7 2.3005 2.1782 1.0827 28 6 2.1588 1.7784 2.4849 29 6 3.4691 1.1578 2.9732 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 2.7740 3.5157 -3.2912 36 1 2.9522 1.3413 -5.0844 37 1 1.2735 1.9329 -5.0859 38 1 0.6502 4.0441 -5.7392 39 1 1.8280 5.1653 -4.9903 40 1 2.3703 6.6176 -10.4642 41 1 3.3872 4.6419 -8.4129 42 1 1.7749 4.0537 -8.9010 43 1 1.5783 1.6704 -8.4526 44 1 1.9236 2.6538 3.0903 45 1 1.3549 1.0478 2.5750 46 1 3.3639 0.8607 4.0166 47 1 3.7043 0.2824 2.3678 48 1 4.2730 1.8884 2.8831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958404707.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:08 Heat of formation + Delta-G solvation = 0.114165 kcal Electronic energy + Delta-G solvation = -29505.684128 eV Core-core repulsion = 25404.216617 eV Total energy + Delta-G solvation = -4101.467511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.36982 -40.65675 -39.68844 -36.84080 -36.39126 -36.04461 -34.76432 -33.93852 -31.85123 -31.32612 -30.67514 -29.38738 -27.32649 -26.02152 -25.35369 -24.63230 -23.83312 -22.24549 -21.54249 -21.43975 -21.01644 -19.19616 -18.93066 -18.09189 -17.26508 -17.08734 -16.90615 -16.79224 -16.13405 -15.75663 -15.71475 -15.61661 -15.33730 -15.03608 -14.80761 -14.72214 -14.37030 -14.23292 -13.93961 -13.75746 -13.51480 -13.36692 -13.14512 -13.13070 -13.05953 -12.70210 -12.64472 -12.39173 -12.30510 -12.23844 -12.10230 -11.91734 -11.84561 -11.77656 -11.55491 -11.20646 -11.05415 -10.77541 -10.71197 -10.34264 -9.97872 -8.91111 -7.86169 -5.21289 0.09576 0.59173 1.07592 1.45116 1.48418 1.54540 2.12096 2.22109 2.48621 3.12683 3.27676 3.34636 3.40051 3.52065 3.56877 3.69978 3.92032 3.95491 3.95664 4.01182 4.14625 4.27830 4.28386 4.40845 4.44502 4.51573 4.58634 4.62759 4.68599 4.75895 4.85005 4.90667 4.93241 4.95535 5.00315 5.14860 5.18375 5.29377 5.33126 5.41009 5.41522 5.52353 5.54702 5.70394 6.17682 6.40962 6.88194 6.96632 7.09434 7.12924 7.75511 8.40098 9.23789 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.017666 B = 0.002399 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.576866 B =11669.871874 C =12666.987735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.062 4.062 3 C 0.137 3.863 4 C -0.130 4.130 5 C 0.603 3.397 6 O -0.556 6.556 7 N -0.710 5.710 8 C 0.159 3.841 9 C -0.094 4.094 10 H 0.104 0.896 11 C 0.143 3.857 12 N -0.625 5.625 13 C -0.244 4.244 14 H 0.079 0.921 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.979 3.021 18 H -0.276 1.276 19 H -0.292 1.292 20 H -0.280 1.280 21 C 0.160 3.840 22 C 0.098 3.902 23 H 0.090 0.910 24 O -0.569 6.569 25 N -0.227 5.227 26 N -0.091 5.091 27 N -0.347 5.347 28 C 0.101 3.899 29 C -0.167 4.167 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.410 0.590 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.013 0.987 39 H 0.043 0.957 40 H 0.248 0.752 41 H 0.023 0.977 42 H 0.016 0.984 43 H 0.391 0.609 44 H 0.118 0.882 45 H 0.134 0.866 46 H 0.113 0.887 47 H 0.064 0.936 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.354 -16.832 25.779 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.101 4.101 3 C -0.002 4.002 4 C -0.270 4.270 5 C 0.388 3.612 6 O -0.435 6.435 7 N -0.360 5.360 8 C 0.036 3.964 9 C -0.114 4.114 10 H 0.122 0.878 11 C 0.018 3.982 12 N -0.351 5.351 13 C -0.373 4.373 14 H 0.097 0.903 15 C -0.258 4.258 16 N -0.599 5.599 17 Si 0.807 3.193 18 H -0.202 1.202 19 H -0.218 1.218 20 H -0.206 1.206 21 C 0.035 3.965 22 C 0.038 3.962 23 H 0.108 0.892 24 O -0.377 6.377 25 N -0.100 5.100 26 N -0.070 5.070 27 N -0.133 5.133 28 C -0.017 4.017 29 C -0.225 4.225 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.135 0.865 35 H 0.246 0.754 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.041 0.959 42 H 0.034 0.966 43 H 0.241 0.759 44 H 0.136 0.864 45 H 0.152 0.848 46 H 0.132 0.868 47 H 0.083 0.917 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.479 -15.957 26.494 30.963 hybrid contribution -0.283 0.943 -1.549 1.835 sum 1.197 -15.014 24.944 29.139 Atomic orbital electron populations 1.21664 0.92473 1.03918 1.01704 1.20605 0.97639 0.85476 1.06400 1.22322 0.95141 0.96983 0.85783 1.21277 1.17031 0.93104 0.95578 1.16877 0.76985 0.84358 0.83017 1.90736 1.48416 1.20288 1.84034 1.45871 1.66647 1.17457 1.06042 1.20937 1.01793 0.95929 0.77780 1.22566 1.00157 0.95031 0.93604 0.87828 1.21673 0.95658 0.92814 0.88099 1.44686 1.71778 1.10065 1.08555 1.19410 1.33476 0.87943 0.96476 0.90333 1.25622 1.01700 1.02468 0.95998 1.70130 1.49771 1.36752 1.03266 0.85151 0.78002 0.79566 0.76601 1.20236 1.21787 1.20596 1.21687 0.95817 0.87880 0.91151 1.22937 0.90321 0.88719 0.94205 0.89249 1.86381 1.54120 1.62431 1.34731 1.74598 1.11680 1.18741 1.04951 1.81881 1.21097 1.01004 1.03000 1.50829 1.43697 1.09829 1.08909 1.22562 1.01837 1.03603 0.73707 1.22193 0.95188 1.01012 1.04096 0.89159 0.91489 0.94505 0.88138 0.86534 0.75393 0.90401 0.91953 0.96871 0.93881 0.94296 0.95886 0.96598 0.75918 0.86409 0.84850 0.86814 0.91698 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.89 71.98 0.71 -1.07 16 2 C -0.06 -0.85 5.43 29.85 0.16 -0.69 16 3 C 0.14 2.76 6.27 41.72 0.26 3.03 16 4 C -0.13 -3.55 6.99 40.82 0.29 -3.26 16 5 C 0.60 18.22 7.82 86.69 0.68 18.89 16 6 O -0.56 -18.17 14.71 -4.02 -0.06 -18.23 16 7 N -0.71 -21.17 5.50 -466.28 -2.56 -23.73 16 8 C 0.16 4.98 4.60 86.38 0.40 5.38 16 9 C -0.09 -3.26 2.98 -9.40 -0.03 -3.28 16 10 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16 11 C 0.14 6.16 6.64 86.86 0.58 6.74 16 12 N -0.62 -33.03 3.39 -692.01 -2.35 -35.38 16 13 C -0.24 -14.11 10.28 84.03 0.86 -13.25 16 14 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 15 C -0.06 -3.76 5.49 84.86 0.47 -3.30 16 16 N -0.95 -57.33 10.31 21.65 0.22 -57.11 16 17 Si 0.98 46.70 29.55 68.60 2.03 48.73 16 18 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 C 0.16 7.84 5.14 86.73 0.45 8.28 16 22 C 0.10 3.57 4.09 31.78 0.13 3.70 16 23 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 24 O -0.57 -19.46 12.24 -148.98 -1.82 -21.29 16 25 N -0.23 -6.65 12.04 -50.00 -0.60 -7.25 16 26 N -0.09 -2.33 13.78 37.02 0.51 -1.82 16 27 N -0.35 -6.10 3.63 -333.78 -1.21 -7.31 16 28 C 0.10 0.67 6.87 86.38 0.59 1.26 16 29 C -0.17 -0.80 10.24 71.98 0.74 -0.06 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.83 6.42 -2.39 -0.02 1.81 16 34 H 0.12 0.69 7.82 -2.39 -0.02 0.67 16 35 H 0.41 11.88 8.16 -92.71 -0.76 11.13 16 36 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.21 7.55 -2.39 -0.02 2.19 16 38 H 0.01 0.61 7.91 -2.39 -0.02 0.59 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 41 H 0.02 1.24 7.38 -2.39 -0.02 1.23 16 42 H 0.02 0.87 7.44 -2.39 -0.02 0.85 16 43 H 0.39 10.46 9.12 -74.06 -0.68 9.79 16 44 H 0.12 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.13 0.09 7.76 -2.39 -0.02 0.07 16 46 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 48 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -78.59 394.46 -0.01 -78.60 By element: Atomic # 1 Polarization: 22.87 SS G_CDS: -0.44 Total: 22.43 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 6.28 Total: 22.37 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -5.99 Total: -132.61 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.88 Total: -39.52 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.73 kcal Total: -78.59 -0.01 -78.60 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958404707.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.718 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds