Wall clock time and date at job start Tue Mar 31 2020 20:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47231 * 2 1 4 4 C 1.53001 * 109.47207 * 239.99836 * 2 1 3 5 5 N 1.46495 * 109.47113 * 119.99963 * 2 1 3 6 6 C 1.34582 * 125.75129 * 75.00278 * 5 2 1 7 7 N 1.30868 * 107.63176 * 180.02562 * 6 5 2 8 8 C 1.34556 * 107.26469 * 0.02562 * 7 6 5 9 9 C 1.47873 * 126.04856 * 179.97438 * 8 7 6 10 10 O 1.21553 * 120.00145 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99870 * 359.74710 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27968 * 11 9 8 13 13 C 1.53004 * 109.47270 * 179.97438 * 12 11 9 14 14 H 1.08998 * 110.88562 * 51.11532 * 13 12 11 15 15 C 1.54915 * 110.99910 * 287.19436 * 13 12 11 16 16 N 1.47433 * 104.82667 * 204.91686 * 15 13 12 17 17 C 1.36933 * 125.64523 * 204.17449 * 16 15 13 18 18 H 1.07997 * 120.00058 * 359.96984 * 17 16 15 19 19 C 1.38809 * 119.99849 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00085 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46924 * 60.00070 * 21 19 17 23 23 H 1.48504 * 109.47220 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47345 * 300.00492 * 21 19 17 25 25 C 1.47016 * 108.70219 * 24.12959 * 16 15 13 26 26 C 1.54330 * 107.27583 * 358.93908 * 25 16 15 27 27 H 1.09001 * 110.87123 * 219.37067 * 26 25 16 28 28 O 1.42902 * 110.71717 * 96.16752 * 26 25 16 29 29 N 1.28855 * 125.74969 * 255.33151 * 5 2 1 30 30 H 1.08991 * 109.47459 * 299.99949 * 1 2 3 31 31 H 1.08997 * 109.47459 * 60.00414 * 1 2 3 32 32 H 1.09001 * 109.47042 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47308 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.46492 * 300.00119 * 3 2 1 35 35 H 1.09004 * 109.47014 * 59.99397 * 3 2 1 36 36 H 1.09001 * 109.47529 * 300.00204 * 4 2 1 37 37 H 1.09009 * 109.46796 * 59.99878 * 4 2 1 38 38 H 1.09000 * 109.47169 * 179.97438 * 4 2 1 39 39 H 1.08002 * 126.18477 * 359.97438 * 6 5 2 40 40 H 0.97000 * 119.99736 * 0.27240 * 11 9 8 41 41 H 1.08998 * 109.46795 * 299.99885 * 12 11 9 42 42 H 1.08997 * 109.47029 * 59.99499 * 12 11 9 43 43 H 1.08996 * 110.36685 * 323.75403 * 15 13 12 44 44 H 1.08991 * 110.37003 * 86.08007 * 15 13 12 45 45 H 0.97003 * 119.99844 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.88387 * 239.52101 * 25 16 15 47 47 H 1.09001 * 110.01410 * 118.43326 * 25 16 15 48 48 H 0.96699 * 113.99810 * 66.48199 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1961 6 6 2.0139 -2.0220 1.3923 7 7 2.5273 -2.2503 2.5742 8 6 2.8480 -1.0573 3.1075 9 6 3.4575 -0.8335 4.4360 10 8 3.7021 0.2969 4.8099 11 7 3.7366 -1.8827 5.2347 12 6 4.3348 -1.6607 6.5534 13 6 4.5474 -3.0062 7.2501 14 1 5.0795 -3.7006 6.6000 15 6 3.1991 -3.6068 7.7206 16 7 3.5532 -4.4963 8.8418 17 6 2.8189 -5.5692 9.2719 18 1 1.8931 -5.8231 8.7772 19 6 3.2645 -6.3302 10.3438 20 7 4.3926 -6.0204 10.9471 21 14 2.2626 -7.7934 10.9310 22 1 2.1264 -8.7757 9.8256 23 1 2.9493 -8.4340 12.0813 24 1 0.9153 -7.3334 11.3531 25 6 4.8255 -4.0412 9.4210 26 6 5.2940 -2.8227 8.5978 27 1 6.3732 -2.8475 8.4473 28 8 4.9014 -1.6035 9.2314 29 7 2.5189 -0.1252 2.2402 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 1.6767 -1.7490 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7209 -1.2494 39 1 1.6514 -2.7674 0.6998 40 1 3.5413 -2.7847 4.9363 41 1 5.2938 -1.1559 6.4370 42 1 3.6691 -1.0417 7.1548 43 1 2.5297 -2.8165 8.0601 44 1 2.7364 -4.1773 6.9154 45 1 4.7037 -6.5520 11.6964 46 1 5.5671 -4.8377 9.3588 47 1 4.6793 -3.7515 10.4616 48 1 5.3396 -1.4414 10.0780 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958409969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:12:16 Heat of formation + Delta-G solvation = 5.678583 kcal Electronic energy + Delta-G solvation = -29220.708649 eV Core-core repulsion = 25119.482429 eV Total energy + Delta-G solvation = -4101.226220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 337.190 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.53923 -40.81971 -39.75795 -38.21251 -36.40521 -36.16115 -34.05847 -33.55750 -32.20077 -31.26332 -29.48002 -28.47250 -28.39507 -27.44937 -26.08801 -24.38214 -24.00530 -22.25860 -21.62036 -21.12200 -21.07179 -19.16711 -18.94415 -18.04851 -17.63061 -17.47179 -17.08208 -16.79733 -16.27699 -15.80486 -15.76766 -15.42715 -15.17381 -15.08055 -14.90796 -14.68864 -14.36567 -14.27276 -13.79229 -13.56577 -13.29042 -13.23092 -13.12539 -13.07125 -13.02093 -12.76167 -12.63766 -12.39867 -12.37593 -12.11087 -11.99303 -11.92489 -11.77948 -11.68233 -11.47302 -11.41832 -11.31049 -10.77472 -10.70793 -10.61410 -10.14267 -8.90281 -7.84940 -5.20177 0.30790 1.09787 1.16203 1.46368 1.49814 1.55884 1.99106 2.24812 2.49786 3.07443 3.25791 3.30120 3.37515 3.56375 3.66847 3.76327 3.79277 3.86926 3.91437 3.96349 4.00939 4.43051 4.55101 4.58750 4.59239 4.61340 4.63510 4.69632 4.78737 4.81204 4.84107 4.88207 4.93563 4.98838 5.11107 5.17650 5.22596 5.23391 5.36601 5.38354 5.42435 5.53927 5.68732 5.71048 6.18508 6.32338 6.91221 6.96768 7.10089 7.10619 7.76412 8.41201 9.25126 Molecular weight = 337.19amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.002234 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.309205 B =12528.236099 C =13691.399634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.156 3.844 3 C -0.149 4.149 4 C -0.155 4.155 5 N -0.286 5.286 6 C 0.202 3.798 7 N -0.504 5.504 8 C 0.113 3.887 9 C 0.611 3.389 10 O -0.563 6.563 11 N -0.695 5.695 12 C 0.157 3.843 13 C -0.092 4.092 14 H 0.109 0.891 15 C 0.143 3.857 16 N -0.624 5.624 17 C -0.243 4.243 18 H 0.081 0.919 19 C -0.066 4.066 20 N -0.951 5.951 21 Si 0.980 3.020 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.161 3.839 26 C 0.097 3.903 27 H 0.090 0.910 28 O -0.571 6.571 29 N -0.271 5.271 30 H 0.044 0.956 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.052 0.948 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.058 0.942 39 H 0.271 0.729 40 H 0.417 0.583 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.048 0.952 45 H 0.247 0.753 46 H 0.025 0.975 47 H 0.015 0.985 48 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.403 10.683 -28.793 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.076 3.924 3 C -0.206 4.206 4 C -0.213 4.213 5 N -0.083 5.083 6 C -0.093 4.093 7 N -0.230 5.230 8 C -0.165 4.165 9 C 0.394 3.606 10 O -0.439 6.439 11 N -0.347 5.347 12 C 0.034 3.966 13 C -0.111 4.111 14 H 0.127 0.873 15 C 0.017 3.983 16 N -0.350 5.350 17 C -0.372 4.372 18 H 0.099 0.901 19 C -0.259 4.259 20 N -0.600 5.600 21 Si 0.808 3.192 22 H -0.200 1.200 23 H -0.219 1.219 24 H -0.207 1.207 25 C 0.035 3.965 26 C 0.037 3.963 27 H 0.108 0.892 28 O -0.379 6.379 29 N -0.111 5.111 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.133 0.867 38 H 0.077 0.923 39 H 0.286 0.714 40 H 0.254 0.746 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.033 0.967 48 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.437 11.754 -28.591 31.230 hybrid contribution -0.209 -1.350 1.303 1.888 sum -4.646 10.404 -27.288 29.571 Atomic orbital electron populations 1.22293 0.90217 1.04608 1.04352 1.21676 0.96419 0.94079 0.80211 1.22019 1.01515 0.93014 1.04073 1.22306 1.01987 1.02310 0.94724 1.48218 1.40249 1.06764 1.13050 1.27206 0.99564 0.86978 0.95551 1.71248 1.17640 1.25391 1.08764 1.23437 1.08276 0.86863 0.97953 1.16541 0.77699 0.84539 0.81790 1.90784 1.54656 1.23871 1.74615 1.45695 1.62214 1.09676 1.17074 1.21000 0.98528 0.96239 0.80878 1.22563 0.97385 0.96082 0.95114 0.87302 1.21680 0.94792 0.92039 0.89756 1.44685 1.23664 1.31275 1.35420 1.19422 1.02984 1.03185 1.11590 0.90141 1.25640 0.98937 1.02491 0.98835 1.70140 1.23025 1.41926 1.24931 0.85135 0.77611 0.79056 0.77423 1.20011 1.21948 1.20686 1.21680 0.87393 0.92922 0.94486 1.22971 0.97672 0.83948 0.91749 0.89183 1.86389 1.71587 1.39777 1.40104 1.74211 1.14130 1.26282 0.96504 0.93628 0.86759 0.90019 0.92915 0.87142 0.93097 0.89140 0.86743 0.92312 0.71390 0.74606 0.90472 0.92094 0.97055 0.93365 0.94336 0.95719 0.96675 0.75915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.72 71.98 0.63 -0.23 16 2 C 0.16 1.38 1.22 3.60 0.00 1.39 16 3 C -0.15 -1.62 8.05 71.98 0.58 -1.04 16 4 C -0.16 -0.34 8.28 71.98 0.60 0.26 16 5 N -0.29 -5.05 3.16 -311.60 -0.99 -6.03 16 6 C 0.20 3.19 11.71 180.30 2.11 5.31 16 7 N -0.50 -12.58 11.09 -193.03 -2.14 -14.72 16 8 C 0.11 3.45 7.96 137.13 1.09 4.54 16 9 C 0.61 21.23 7.83 86.79 0.68 21.90 16 10 O -0.56 -23.22 17.09 -3.88 -0.07 -23.29 16 11 N -0.69 -21.58 5.50 -465.94 -2.56 -24.15 16 12 C 0.16 5.14 4.60 86.38 0.40 5.54 16 13 C -0.09 -3.18 2.98 -9.40 -0.03 -3.21 16 14 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 15 C 0.14 6.08 6.64 86.86 0.58 6.66 16 16 N -0.62 -32.71 3.39 -691.98 -2.35 -35.06 16 17 C -0.24 -13.87 10.28 84.03 0.86 -13.00 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -3.80 5.49 84.86 0.47 -3.34 16 20 N -0.95 -57.13 10.31 21.65 0.22 -56.90 16 21 Si 0.98 46.19 29.55 68.60 2.03 48.21 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 C 0.16 7.85 5.14 86.73 0.45 8.29 16 26 C 0.10 3.54 4.09 31.78 0.13 3.67 16 27 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 28 O -0.57 -20.09 12.24 -148.98 -1.82 -21.92 16 29 N -0.27 -7.53 11.09 -52.43 -0.58 -8.11 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 32 H 0.08 0.26 8.14 -2.39 -0.02 0.25 16 33 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.05 0.82 8.02 -2.38 -0.02 0.81 16 36 H 0.09 -0.12 7.34 -2.39 -0.02 -0.14 16 37 H 0.11 -0.28 8.14 -2.38 -0.02 -0.30 16 38 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.27 1.09 7.53 -2.91 -0.02 1.07 16 40 H 0.42 11.80 8.18 -92.71 -0.76 11.04 16 41 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.06 2.29 7.55 -2.39 -0.02 2.27 16 43 H 0.01 0.53 7.90 -2.39 -0.02 0.51 16 44 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.02 1.33 7.38 -2.39 -0.02 1.31 16 47 H 0.02 0.83 7.43 -2.39 -0.02 0.81 16 48 H 0.39 10.83 9.12 -74.06 -0.68 10.16 16 Total: -1.00 -83.79 393.90 -0.17 -83.96 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.45 Total: 21.27 kcal Atomic # 6 Polarization: 28.19 SS G_CDS: 8.54 Total: 36.73 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -8.40 Total: -144.98 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -1.89 Total: -45.20 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -83.79 -0.17 -83.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958409969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.637 kcal (2) G-P(sol) polarization free energy of solvation -83.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds